Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G249100.1 | Wheat | plastid | 76.8 | 99.0 |
| TraesCS3B01G278000.1 | Wheat | plastid | 76.29 | 98.01 |
| HORVU3Hr1G067350.2 | Barley | nucleus | 72.94 | 76.28 |
| Os01t0713600-01 | Rice | plastid | 51.55 | 69.2 |
| Zm00001d011712_P001 | Maize | mitochondrion | 62.11 | 61.48 |
| KXG33236 | Sorghum | mitochondrion, nucleus | 62.11 | 61.48 |
| GSMUA_Achr3P32440_001 | Banana | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 29.64 | 56.65 |
| GSMUA_Achr8P18070_001 | Banana | nucleus | 28.35 | 52.88 |
| Solyc02g094460.1.1 | Tomato | nucleus | 18.56 | 26.28 |
| Bra032953.1-P | Field mustard | nucleus | 20.36 | 25.65 |
| CDY34212 | Canola | nucleus | 20.36 | 25.65 |
| CDY28525 | Canola | nucleus | 20.36 | 25.57 |
| AT3G26790.1 | Thale cress | nucleus | 20.62 | 25.56 |
| CDY13657 | Canola | nucleus | 20.62 | 25.4 |
| CDY53003 | Canola | nucleus | 20.36 | 25.16 |
| PGSC0003DMT400052167 | Potato | nucleus | 18.56 | 25.09 |
| VIT_14s0068g01290.t01 | Wine grape | nucleus | 18.56 | 25.09 |
| KRG94672 | Soybean | nucleus | 20.88 | 24.4 |
| KRH06856 | Soybean | nucleus | 20.88 | 23.96 |
| CDY66878 | Canola | nucleus | 20.62 | 22.22 |
| CDY15679 | Canola | nucleus | 19.85 | 22.06 |
| CDY46611 | Canola | nucleus | 20.36 | 22.01 |
| CDX94608 | Canola | nucleus | 19.59 | 21.78 |
| Bra030087.1-P | Field mustard | nucleus | 19.07 | 21.51 |
| Bra032890.1-P | Field mustard | nucleus | 19.59 | 21.47 |
| Bra025229.1-P | Field mustard | nucleus | 14.95 | 21.32 |
| AT1G28300.1 | Thale cress | nucleus | 19.07 | 20.39 |
| TraesCS7A01G329600.1 | Wheat | nucleus | 16.75 | 18.84 |
| TraesCS2A01G554300.1 | Wheat | nucleus | 21.91 | 18.09 |
| KRG89628 | Soybean | plastid | 17.53 | 18.04 |
| KRG89627 | Soybean | nucleus | 17.01 | 17.51 |
| TraesCS3A01G417300.1 | Wheat | nucleus | 19.07 | 10.69 |
| TraesCS2A01G105600.1 | Wheat | nucleus | 14.95 | 6.11 |
| TraesCS2A01G204300.1 | Wheat | plastid | 14.43 | 5.81 |
Protein Annotations
| EnsemblPlants:TraesCS3A01G249100.2 | EnsemblPlantsGene:TraesCS3A01G249100 | Gene3D:2.40.330.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | InterPro:B3_DNA-bd | InterPro:DNA-bd_pseudobarrel_sf | InterPro:IPR003340 | InterPro:IPR015300 | PANTHER:PTHR31140 |
| PANTHER:PTHR31140:SF20 | PFAM:PF02362 | PFscan:PS50863 | SEG:seg | SMART:SM01019 | SUPFAM:SSF101936 |
| TIGR:cd10017 | MapMan:15.5.5.5 | : | : | : | : |
Description
No Description!
Coordinates
chr3A:-:467347843..467352055
Molecular Weight (calculated)
42916.3 Da
IEP (calculated)
10.611
GRAVY (calculated)
-0.553
Length
388 amino acids
Sequence
(BLAST)
(BLAST)
001: MRKKRQERPP RASHPAPATL RPRGWPRPRA LGIAPSGAGS PPAPISELAR HLAPRPRLRP PIPPINAPRA APTLAALTSP SSPRPAGMAA ISSSSSSKRR
101: PPSASTASSS SGDGIGEYRP QLVTRKRRSG GRGPRGGVRW MPAIRPVNEL DLNRVALDPN HQVAGLRVIL QKELRNSDIS QLGRIVLPKK ESEAYLPILT
201: SKDGRSLRMH DLLNAQLWTF KYRYWPNNKS RMYVLENTGD YVRTHNLRVG DFIMIYKDDD KNRFVIRAKK AGDDLVASLP QFHEHISSIL PIPEVDDYVS
301: LIPPPADISA FAPQADENYE MFDGIFNSLP EIPVANVRYS DFFDPFSDCM DMSNPGLNAN NSANLASHFH DERTGLSLFP NPKSGPLM
101: PPSASTASSS SGDGIGEYRP QLVTRKRRSG GRGPRGGVRW MPAIRPVNEL DLNRVALDPN HQVAGLRVIL QKELRNSDIS QLGRIVLPKK ESEAYLPILT
201: SKDGRSLRMH DLLNAQLWTF KYRYWPNNKS RMYVLENTGD YVRTHNLRVG DFIMIYKDDD KNRFVIRAKK AGDDLVASLP QFHEHISSIL PIPEVDDYVS
301: LIPPPADISA FAPQADENYE MFDGIFNSLP EIPVANVRYS DFFDPFSDCM DMSNPGLNAN NSANLASHFH DERTGLSLFP NPKSGPLM
001: MDNFLPFPSS NANSVQELSM DPNNNRSHFT TVPTYDHHQA QPHHFLPPFS YPVEQMAAVM NPQPVYLSEC YPQIPVTQTG SEFGSLVGNP CLWQERGGFL
101: DPRMTKMARI NRKNAMMRSR NNSSPNSSPS ELVDSKRQLM MLNLKNNVQI SDKKDSYQQS TFDNKKLRVL CEKELKNSDV GSLGRIVLPK RDAEANLPKL
201: SDKEGIVVQM RDVFSMQSWS FKYKFWSNNK SRMYVLENTG EFVKQNGAEI GDFLTIYEDE SKNLYFAMNG NSGKQNEGRE NESRERNHYE EAMLDYIPRD
301: EEEASIAMLI GNLNDHYPIP NDLMDLTTDL QHHQATSSSM PPEDHAYVGS SDDQVSFNDF EWW
101: DPRMTKMARI NRKNAMMRSR NNSSPNSSPS ELVDSKRQLM MLNLKNNVQI SDKKDSYQQS TFDNKKLRVL CEKELKNSDV GSLGRIVLPK RDAEANLPKL
201: SDKEGIVVQM RDVFSMQSWS FKYKFWSNNK SRMYVLENTG EFVKQNGAEI GDFLTIYEDE SKNLYFAMNG NSGKQNEGRE NESRERNHYE EAMLDYIPRD
301: EEEASIAMLI GNLNDHYPIP NDLMDLTTDL QHHQATSSSM PPEDHAYVGS SDDQVSFNDF EWW
Arabidopsis Description
LEC2B3 domain-containing transcription factor LEC2 [Source:UniProtKB/Swiss-Prot;Acc:Q1PFR7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.