CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG96047
KRG97906
KRG98129
KRH02716
KRH11595
KRH12382
KRH17186
KRH19153
KRH19960
KRH30646
KRH30983
KRH32562
KRH36613
KRH37384
KRH51318	nucleus
KRH60609	nucleus
KRH67769
KRH72829

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G01320.1	KRG98129	AT2G30470.1	19962994
AT3G01320.1	KRH17186	AT2G30470.1	19962994
AT3G01320.1	KRH30646	AT2G30470.1	19962994
AT3G01320.1	KRH72829	AT2G30470.1	19962994
AT3G01320.1	KRH51318	AT4G38130.1	23371947
AT3G01320.1	KRH60609	AT4G38130.1	23371947
AT3G01320.1	KRH51318	AT4G38130.1	23371947
AT3G01320.1	KRH60609	AT4G38130.1	23371947
AT3G01320.1	KRG96047	AT5G04390.1	19962994
AT3G01320.1	KRH19960	AT5G04390.1	19962994
AT3G01320.1	KRH32562	AT5G04390.1	19962994
AT3G01320.1	KRH67769	AT5G04390.1	19962994
AT3G01320.1	KRG97906	AT5G13820.1	19962994
AT3G01320.1	KRH30983	AT5G13820.1	19962994
AT3G01320.1	KRH11595	AT5G47660.1	19962994
AT3G01320.1	KRH36613	AT5G47660.1	19962994
AT3G01320.1	KRH02716	AT5G56860.1	19962994
AT3G01320.1	KRH12382	AT5G56860.1	19962994
AT3G01320.1	KRH19153	AT5G56860.1	19962994
AT3G01320.1	KRH37384	AT5G56860.1	19962994

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g087380.1.1	Tomato	nucleus, plastid	17.45	59.85
Solyc02g087370.1.1	Tomato	cytosol	23.62	57.81
KRG99215	Soybean	cytosol	14.04	48.18
KRH18551	Soybean	cytosol, nucleus, peroxisome	20.21	43.98
PGSC0003DMT400003545	Potato	cytosol, mitochondrion	35.74	32.81
KRG93437	Soybean	nucleus	97.66	32.74
Solyc02g087390.1.1	Tomato	cytosol	33.62	31.04
KRH45778	Soybean	cytosol	32.98	24.33
VIT_14s0066g02330.t01	Wine grape	nucleus	71.06	24.12
KRH45776	Soybean	nucleus	47.23	24.08
CDX91007	Canola	nucleus	67.45	23.96
CDX85568	Canola	nucleus	67.66	23.8
Bra023501.1-P	Field mustard	nucleus	67.66	23.8
CDX70587	Canola	nucleus	68.09	23.62
CDX78604	Canola	nucleus	67.66	23.56
Bra006276.1-P	Field mustard	nucleus	67.45	23.55
PGSC0003DMT400003538	Potato	nucleus	67.87	23.51
Solyc02g067570.2.1	Tomato	nucleus	65.96	23.0
AT5G15020.1	Thale cress	nucleus	66.38	22.82
Solyc02g087360.2.1	Tomato	nucleus	64.89	22.71
AT3G01320.1	Thale cress	mitochondrion, nucleus	64.26	22.01
Bra040510.1-P	Field mustard	mitochondrion, nucleus	61.49	21.49
CDY28683	Canola	mitochondrion, nucleus	61.28	21.4
KRH74716	Soybean	nucleus	57.87	20.68
KRH69432	Soybean	nucleus	57.45	18.88
KRH45772	Soybean	nucleus	52.55	17.71
KRG99216	Soybean	nucleus	51.28	17.45
KRH18561	Soybean	nucleus	0.0	0.0

Protein Annotations

Gene3D:1.20.1160.11	MapMan:12.3.2.4.2	UniProt:A0A0R0GJD0	EMBL:ACUP02008094	ncoils:Coil	EnsemblPlantsGene:GLYMA_13G0678002
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR003822	ProteinID:KRH18558.1
EnsemblPlants:KRH18559	ProteinID:KRH18559	ProteinID:KRH18559.1	InterPro:PAH	InterPro:PAH_sf	PFAM:PF02671
PFscan:PS51477	PANTHER:PTHR12346	PANTHER:PTHR12346:SF8	SUPFAM:SSF47762	UniParc:UPI0006EDF940	SEG:seg

Description

hypothetical protein

Coordinates

chr13:+:16765722..16770460

Molecular Weight (calculated)

54590.4 Da

IEP (calculated)

8.200

GRAVY (calculated)

-1.019

Length

470 amino acids

Sequence
(BLAST)

001: MKRARDDMYP ASQFKRPFAS SRADSYGQNQ VPGSGGGGGG GNGGVVGGGA NTSQKLTTND ALSYLKEVKD MFQDQREKYD MFLEVMKDFK AQRTDTAGVI
101: KRVKELFKGH NNLIFGFNTF LPKGYEITLD EDEAPPKKTV EFEEAISFVN KIKKRFQNDE LVYKSFLDIL NMYRKEHKDI GEVYSEVATL FKDHRDLLEE
201: FTRFLPDTSA APSTQHAPYI RNSLHRFNER GSMAPMIRQM PADKAQRYRR DRLPSHDRDH DMSAERPELD DDKTMMNIHK EQRKRESRER RMRDQDEREH
301: DLDNNRDLNL QRFPDKKKSV KKAEGMYSQA FSFCEKVKEK LSSSDDYQTF LKCLHIFSNG IIKRNDLQNL VTDLLGKHSD LMDEFNDFLE RCENIDGFLA
401: GVMSKKSLST DAHLSRSSKL EDKDKEHKRD MDGAKEKERY REKYMGKSIQ ELDLSDCKRC TPSYRLLPAD

Best Arabidopsis Sequence Match ( AT1G24190.2 )
(BLAST)

0001: MVGGGSAQKL TTNDALAYLK AVKDKFQDQR GKYDEFLEVM KNFKSQRVDT AGVITRVKEL FKGHQELILG FNTFLPKGFE ITLQPEDGQP PLKKRVEFEE
0101: AISFVNKIKT RFQGDDRVYK SFLDILNMYR RDSKSITEVY QEVAILFRDH SDLLVEFTHF LPDTSATASI PSVKTSVRER GVSLADKKDR IITPHPDHDY
0201: GTEHIDQDRE RPIKKENKEH MRGTNKENEH RDARDFEPHS KKEQFLNKKQ KLHIRGDDPA EISNQSKLSG AVPSSSTYDE KGAMKSYSQD LAIVDRVKEK
0301: LNASEYQEFL RCLNLFSKEI ISRPELQSLV GNLIGVYPDL MDSFIEFLVQ CEKNEGLLSG ILTKKSLWSE GKYPQPSLDN DRDQEHKRDD GLRDRDHEKE
0401: RLEKAAANLK WAKPISELDL SNCEQCTPSY RLLPKNYPIS IASQKTEIGK LVLNDHWVSV TSGSEDYSFS HMRKNQYEES LFKCEDDRFE LDMLLESVNS
0501: TTKHVEELLT KINSNELKTN SPIRVEDHLT ALNLRCIERL YGDHGLDVMD VLKKNVSLAL PVILTRLKQK QEEWARCRSD FDKVWAEIYA KNYYKSLDHR
0601: SFYFKQQDSK KLSMKALLAE IKEITEKKRE DDSLLAFAAG NRLSISPDLE FDYPDHDLHE DLYQLIKYSC AEMCSTEQLD KVMKIWTTFV EQIFGVPSRP
0701: QGAEDQEDVV KSMNQNVKSG SSSAGESEGS PHNYASVADS RRSKSSRKAN EHSQLGQTSN SERDGAAGRT SDALCETAQH EKMLKNVVTS DEKPESKQAV
0801: SIERAHDSTA LAVDGLLDQS NGGSSIVHMT GHCNNNLKPV TCGTELELKM NDGNGPKLEV GNKKLLTNGI AVEITSDQEM AGTSKVEREE GELSPNGDFE
0901: EDNFAVYAKT DFETFSKAND STGNNISGDR SREGEPSCLE TRAENDAEGD ENAARSSEDS RNEYENGDVS GTESGGGEDP EDDLDNNNKG ESEGEAECMA
1001: DAHDAEENGS ALPVSARFLL HVKPLVKYVP SAIALHDKDK DSLKNSQVFY GNDSFYVLFR LHRILYERIL SAKVNSSSPE GKWRTSNTKN PTDSYARFMT
1101: ALYNLLDGTS DNAKFEDDCR AIIGTQSYIL FTLDKLIHKF IKHLQVVVAD EMDNKLLQLY FYEKSRRPET IFDAVYYDNT RVLLPDENIY RIECRLSTPA
1201: KLSIQLMCNG LDKPDVTSVS IDPTFAAYLH NDFLSIQPNA REDRRIYLNR NKRKVCREDE QLYSTDEVKI KNGLECKIAC GSSKVSYVLE TEDLLVRVKK
1301: RRKTLCHNQD SWVRQMRLQY YKNNFL

Arabidopsis Description

SNL3SIN3-like 3 [Source:TAIR;Acc:AT1G24190]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.