Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRG99216 | Soybean | nucleus | 92.69 | 93.63 |
| KRH69432 | Soybean | nucleus | 76.56 | 74.69 |
| KRH74716 | Soybean | nucleus | 70.11 | 74.37 |
| KRH45776 | Soybean | nucleus | 42.8 | 64.75 |
| Solyc05g006540.2.1 | Tomato | nucleus | 57.85 | 59.34 |
| PGSC0003DMT400058222 | Potato | nucleus | 57.85 | 59.12 |
| CDY31594 | Canola | nucleus | 16.7 | 58.69 |
| KRH18561 | Soybean | nucleus | 37.49 | 57.98 |
| KRG99215 | Soybean | cytosol | 5.59 | 56.93 |
| CDY30912 | Canola | nucleus | 41.79 | 55.52 |
| KRG93437 | Soybean | nucleus | 55.27 | 54.99 |
| Bra035418.1-P | Field mustard | nucleus | 43.37 | 54.65 |
| CDY24499 | Canola | nucleus | 43.37 | 54.55 |
| AT1G59890.2 | Thale cress | nucleus | 45.23 | 54.07 |
| CDY37976 | Canola | nucleus | 37.99 | 53.64 |
| Bra017891.1-P | Field mustard | nucleus | 37.63 | 53.57 |
| Bra027831.1-P | Field mustard | nucleus | 28.6 | 53.49 |
| CDX93425 | Canola | nucleus | 38.64 | 53.05 |
| Bra019933.1-P | Field mustard | nucleus | 38.64 | 53.05 |
| KRH18559 | Soybean | nucleus | 17.71 | 52.55 |
| CDY33612 | Canola | nucleus | 43.23 | 52.3 |
| CDY45153 | Canola | nucleus | 35.84 | 51.65 |
| CDY31595 | Canola | nucleus | 25.23 | 50.87 |
| CDY06480 | Canola | cytosol | 8.46 | 50.0 |
| KRH45778 | Soybean | cytosol | 22.29 | 48.82 |
| CDY08302 | Canola | cytosol | 8.89 | 48.44 |
| AT1G10450.3 | Thale cress | endoplasmic reticulum, plastid | 40.22 | 47.83 |
| Bra037065.1-P | Field mustard | nucleus | 8.17 | 47.3 |
| CDY08301 | Canola | cytosol | 9.32 | 46.76 |
| Bra037066.1-P | Field mustard | nucleus | 9.25 | 46.4 |
| KRH18551 | Soybean | cytosol, nucleus, peroxisome | 5.73 | 37.04 |
Protein Annotations
| Gene3D:1.20.1160.11 | EntrezGene:100781798 | MapMan:12.3.2.4.2 | EMBL:ACUP02005285 | ncoils:Coil | EnsemblPlantsGene:GLYMA_08G292900 |
| GO:GO:0000118 | GO:GO:0000122 | GO:GO:0000785 | GO:GO:0001106 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0004407 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005654 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016575 | GO:GO:0016787 | GO:GO:0019538 | InterPro:HDAC_interact_dom |
| InterPro:IPR003822 | UniProt:K7L9N1 | EnsemblPlants:KRH45772 | ProteinID:KRH45772 | ProteinID:KRH45772.1 | ProteinID:KRH45773.1 |
| InterPro:PAH | InterPro:PAH_sf | PFAM:PF02671 | PFAM:PF08295 | PFAM:PF16879 | PFscan:PS51477 |
| PANTHER:PTHR12346 | PANTHER:PTHR12346:SF21 | SMART:SM00761 | SUPFAM:SSF47762 | InterPro:Sin3_C | UniParc:UPI00029543DA |
| SEG:seg | : | : | : | : | : |
Description
hypothetical protein
Coordinates
chr8:-:40731010..40742548
Molecular Weight (calculated)
158114.0 Da
IEP (calculated)
5.680
GRAVY (calculated)
-0.812
Length
1395 amino acids
Sequence
(BLAST)
(BLAST)
0001: MKRSRDDVYM SSQLKRPMVS SRGEPSGQPQ MTSGGAQKLT TDDALAYLKA VKDMFQDKRE KYDDFLEVMK DFKAQRIDTS GVIARVKELF KGHKDLILGF
0101: NTFLPKGYEI TLPLEDEQPP QKKPVEFAEA INFVGKIKAR FHDNDRVYKS FLDILNMYRR EAKSIAEVYK EVAALFQDHV DLLREFTHFL PDTSGTASNH
0201: CGLARNSLLP DRSSAMPIIR QMHVEKRERN IASHGDRDLS ADHPDPELDR CLIRADKDQR RHDEKEKGSR DYDHDGISRK RKSGIRAEDS GAEPLHDTDE
0301: NFGMHPISYA CEDKSSLKSM YSPVLGYLDK VKEKLRNPED YQEFLKCLNI YSKEIIARHE LQSLVGNLLG KHADLMEGFD EFLVQCEKNE GFLAGLLKKR
0401: HGPKPVKVED RDRDRDRDDG MKERDRECRE RDKSNAIANK DVLVPKTSLY AGKDKYAAKP ISELDLSNCE QCTPSYCLLP KNYPIPPASQ RTELGAEVLN
0501: DHWVSVTSGS EDYSFKHMRK NQYEESLFRC EDDRFELDML LESVNVATKR VEELLEKVNA NIIKGDSPIR IEEHLTALNL RCIERLYGDH GLDVMDVLKK
0601: NASLALPVIL TRLKQKQDEW ARCRSDFNKV WAEIYAKNYH KSLDHRSFYF KQQDTKSLST KVLLAEIKEI SEKKRKEDDV LLAIAAGNRQ PIIPHLEFVY
0701: PDSEIHEDLY QLIKYSCGEM CTTEQLDKAM KIWTTFLEPM LGVPSRPQGP VDTEDVVKAN KNNSAKTGTG IDDGDSSPAT NPKNLNTNRN GDENFPSEQS
0801: NSCKQWQTSG DNKVKEDNHL DLERSAHKNE TLGSSTQHGK VHINASTTDE VSRANKQDHS IERLVNANVS LTLGMELISR RTNVDNASGL TATPSRPGNI
0901: SGEGGLGLPS LEGADSTRPV TSTNGAINED TKVHRYHEEV GHFKSEREEG ELSPNGGDFE EDNCEVYGHA GLEAVHKGKD GTICRQYQNR HGEEVRGEAG
1001: GENDADDEGE ESPHRSMEDS ENASENGDVS GTESADGEEC SREHEENGDH EHDNKAESEG EAEGMTDAND VEGDGASLPY SERFLVTVKP LAKHVPPVLH
1101: DKQRTVRVFY GNDSFYVLFR LHQTLYERIQ SAKVNSSSAE KKWRASNDTG SSDQYGRFMD ALYNLLDGSS DSTKFEDECR AIIGTQSYVL FTLDKLIYKL
1201: VKQLQVVATE EMDNKLLQLY TYENSRKPGR FVDLVYHENA RVLLHDENIY RIECSPAPTQ LSSIQLMDYG YDKPEMTAVS MDPNFSAYLH NDFLSVVPDK
1301: KEKSGIYLKR NKRKYAISDE YSSQTLDGLQ IINGLECKIA CSSSKVSYVL DTEDFLHQTR RKRRTLYQSS SCHGQEKSPI ICSSRAQRSC KLFSI
0101: NTFLPKGYEI TLPLEDEQPP QKKPVEFAEA INFVGKIKAR FHDNDRVYKS FLDILNMYRR EAKSIAEVYK EVAALFQDHV DLLREFTHFL PDTSGTASNH
0201: CGLARNSLLP DRSSAMPIIR QMHVEKRERN IASHGDRDLS ADHPDPELDR CLIRADKDQR RHDEKEKGSR DYDHDGISRK RKSGIRAEDS GAEPLHDTDE
0301: NFGMHPISYA CEDKSSLKSM YSPVLGYLDK VKEKLRNPED YQEFLKCLNI YSKEIIARHE LQSLVGNLLG KHADLMEGFD EFLVQCEKNE GFLAGLLKKR
0401: HGPKPVKVED RDRDRDRDDG MKERDRECRE RDKSNAIANK DVLVPKTSLY AGKDKYAAKP ISELDLSNCE QCTPSYCLLP KNYPIPPASQ RTELGAEVLN
0501: DHWVSVTSGS EDYSFKHMRK NQYEESLFRC EDDRFELDML LESVNVATKR VEELLEKVNA NIIKGDSPIR IEEHLTALNL RCIERLYGDH GLDVMDVLKK
0601: NASLALPVIL TRLKQKQDEW ARCRSDFNKV WAEIYAKNYH KSLDHRSFYF KQQDTKSLST KVLLAEIKEI SEKKRKEDDV LLAIAAGNRQ PIIPHLEFVY
0701: PDSEIHEDLY QLIKYSCGEM CTTEQLDKAM KIWTTFLEPM LGVPSRPQGP VDTEDVVKAN KNNSAKTGTG IDDGDSSPAT NPKNLNTNRN GDENFPSEQS
0801: NSCKQWQTSG DNKVKEDNHL DLERSAHKNE TLGSSTQHGK VHINASTTDE VSRANKQDHS IERLVNANVS LTLGMELISR RTNVDNASGL TATPSRPGNI
0901: SGEGGLGLPS LEGADSTRPV TSTNGAINED TKVHRYHEEV GHFKSEREEG ELSPNGGDFE EDNCEVYGHA GLEAVHKGKD GTICRQYQNR HGEEVRGEAG
1001: GENDADDEGE ESPHRSMEDS ENASENGDVS GTESADGEEC SREHEENGDH EHDNKAESEG EAEGMTDAND VEGDGASLPY SERFLVTVKP LAKHVPPVLH
1101: DKQRTVRVFY GNDSFYVLFR LHQTLYERIQ SAKVNSSSAE KKWRASNDTG SSDQYGRFMD ALYNLLDGSS DSTKFEDECR AIIGTQSYVL FTLDKLIYKL
1201: VKQLQVVATE EMDNKLLQLY TYENSRKPGR FVDLVYHENA RVLLHDENIY RIECSPAPTQ LSSIQLMDYG YDKPEMTAVS MDPNFSAYLH NDFLSVVPDK
1301: KEKSGIYLKR NKRKYAISDE YSSQTLDGLQ IINGLECKIA CSSSKVSYVL DTEDFLHQTR RKRRTLYQSS SCHGQEKSPI ICSSRAQRSC KLFSI
0001: MVGGGSAQKL TTNDALAYLK AVKDKFQDQR GKYDEFLEVM KNFKSQRVDT AGVITRVKEL FKGHQELILG FNTFLPKGFE ITLQPEDGQP PLKKRVEFEE
0101: AISFVNKIKT RFQGDDRVYK SFLDILNMYR RDSKSITEVY QEVAILFRDH SDLLVEFTHF LPDTSATASI PSVKTSVRER GVSLADKKDR IITPHPDHDY
0201: GTEHIDQDRE RPIKKENKEH MRGTNKENEH RDARDFEPHS KKEQFLNKKQ KLHIRGDDPA EISNQSKLSG AVPSSSTYDE KGAMKSYSQD LAIVDRVKEK
0301: LNASEYQEFL RCLNLFSKEI ISRPELQSLV GNLIGVYPDL MDSFIEFLVQ CEKNEGLLSG ILTKKSLWSE GKYPQPSLDN DRDQEHKRDD GLRDRDHEKE
0401: RLEKAAANLK WAKPISELDL SNCEQCTPSY RLLPKNYPIS IASQKTEIGK LVLNDHWVSV TSGSEDYSFS HMRKNQYEES LFKCEDDRFE LDMLLESVNS
0501: TTKHVEELLT KINSNELKTN SPIRVEDHLT ALNLRCIERL YGDHGLDVMD VLKKNVSLAL PVILTRLKQK QEEWARCRSD FDKVWAEIYA KNYYKSLDHR
0601: SFYFKQQDSK KLSMKALLAE IKEITEKKRE DDSLLAFAAG NRLSISPDLE FDYPDHDLHE DLYQLIKYSC AEMCSTEQLD KVMKIWTTFV EQIFGVPSRP
0701: QGAEDQEDVV KSMNQNVKSG SSSAGESEGS PHNYASVADS RRSKSSRKAN EHSQLGQTSN SERDGAAGRT SDALCETAQH EKMLKNVVTS DEKPESKQAV
0801: SIERAHDSTA LAVDGLLDQS NGGSSIVHMT GHCNNNLKPV TCGTELELKM NDGNGPKLEV GNKKLLTNGI AVEITSDQEM AGTSKVEREE GELSPNGDFE
0901: EDNFAVYAKT DFETFSKAND STGNNISGDR SREGEPSCLE TRAENDAEGD ENAARSSEDS RNEYENGDVS GTESGGGEDP EDDLDNNNKG ESEGEAECMA
1001: DAHDAEENGS ALPVSARFLL HVKPLVKYVP SAIALHDKDK DSLKNSQVFY GNDSFYVLFR LHRILYERIL SAKVNSSSPE GKWRTSNTKN PTDSYARFMT
1101: ALYNLLDGTS DNAKFEDDCR AIIGTQSYIL FTLDKLIHKF IKHLQVVVAD EMDNKLLQLY FYEKSRRPET IFDAVYYDNT RVLLPDENIY RIECRLSTPA
1201: KLSIQLMCNG LDKPDVTSVS IDPTFAAYLH NDFLSIQPNA REDRRIYLNR NKRKVCREDE QLYSTDEVKI KNGLECKIAC GSSKVSYVLE TEDLLVRVKK
1301: RRKTLCHNQD SWVRQMRLQY YKNNFL
0101: AISFVNKIKT RFQGDDRVYK SFLDILNMYR RDSKSITEVY QEVAILFRDH SDLLVEFTHF LPDTSATASI PSVKTSVRER GVSLADKKDR IITPHPDHDY
0201: GTEHIDQDRE RPIKKENKEH MRGTNKENEH RDARDFEPHS KKEQFLNKKQ KLHIRGDDPA EISNQSKLSG AVPSSSTYDE KGAMKSYSQD LAIVDRVKEK
0301: LNASEYQEFL RCLNLFSKEI ISRPELQSLV GNLIGVYPDL MDSFIEFLVQ CEKNEGLLSG ILTKKSLWSE GKYPQPSLDN DRDQEHKRDD GLRDRDHEKE
0401: RLEKAAANLK WAKPISELDL SNCEQCTPSY RLLPKNYPIS IASQKTEIGK LVLNDHWVSV TSGSEDYSFS HMRKNQYEES LFKCEDDRFE LDMLLESVNS
0501: TTKHVEELLT KINSNELKTN SPIRVEDHLT ALNLRCIERL YGDHGLDVMD VLKKNVSLAL PVILTRLKQK QEEWARCRSD FDKVWAEIYA KNYYKSLDHR
0601: SFYFKQQDSK KLSMKALLAE IKEITEKKRE DDSLLAFAAG NRLSISPDLE FDYPDHDLHE DLYQLIKYSC AEMCSTEQLD KVMKIWTTFV EQIFGVPSRP
0701: QGAEDQEDVV KSMNQNVKSG SSSAGESEGS PHNYASVADS RRSKSSRKAN EHSQLGQTSN SERDGAAGRT SDALCETAQH EKMLKNVVTS DEKPESKQAV
0801: SIERAHDSTA LAVDGLLDQS NGGSSIVHMT GHCNNNLKPV TCGTELELKM NDGNGPKLEV GNKKLLTNGI AVEITSDQEM AGTSKVEREE GELSPNGDFE
0901: EDNFAVYAKT DFETFSKAND STGNNISGDR SREGEPSCLE TRAENDAEGD ENAARSSEDS RNEYENGDVS GTESGGGEDP EDDLDNNNKG ESEGEAECMA
1001: DAHDAEENGS ALPVSARFLL HVKPLVKYVP SAIALHDKDK DSLKNSQVFY GNDSFYVLFR LHRILYERIL SAKVNSSSPE GKWRTSNTKN PTDSYARFMT
1101: ALYNLLDGTS DNAKFEDDCR AIIGTQSYIL FTLDKLIHKF IKHLQVVVAD EMDNKLLQLY FYEKSRRPET IFDAVYYDNT RVLLPDENIY RIECRLSTPA
1201: KLSIQLMCNG LDKPDVTSVS IDPTFAAYLH NDFLSIQPNA REDRRIYLNR NKRKVCREDE QLYSTDEVKI KNGLECKIAC GSSKVSYVLE TEDLLVRVKK
1301: RRKTLCHNQD SWVRQMRLQY YKNNFL
Arabidopsis Description
SNL3SIN3-like 3 [Source:TAIR;Acc:AT1G24190]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.