Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra027831.1-P | Field mustard | nucleus | 76.76 | 99.6 |
| CDY30912 | Canola | nucleus | 90.29 | 83.24 |
| CDY31594 | Canola | nucleus | 31.92 | 77.83 |
| CDY55066 | Canola | cytosol | 31.61 | 76.88 |
| CDY24499 | Canola | nucleus | 76.76 | 67.0 |
| CDY55065 | Canola | nucleus | 48.24 | 66.81 |
| AT1G59890.2 | Thale cress | nucleus | 79.44 | 65.9 |
| CDY31595 | Canola | nucleus | 46.59 | 65.17 |
| CDY33612 | Canola | nucleus | 77.27 | 64.87 |
| CDY23529 | Canola | cytosol | 9.92 | 60.76 |
| CDY48380 | Canola | cytosol | 9.92 | 60.76 |
| CDX93425 | Canola | nucleus | 57.23 | 54.53 |
| CDY37976 | Canola | nucleus | 55.06 | 53.95 |
| CDY64434 | Canola | nucleus | 3.31 | 51.61 |
| CDY48381 | Canola | cytosol | 8.16 | 50.97 |
| CDY23528 | Canola | cytosol | 8.16 | 50.97 |
| CDY06480 | Canola | cytosol | 12.4 | 50.85 |
| CDY08302 | Canola | cytosol | 12.71 | 48.05 |
| CDY67989 | Canola | nucleus | 7.64 | 47.44 |
| CDY08301 | Canola | cytosol | 13.02 | 45.32 |
| CDY42981 | Canola | mitochondrion | 7.02 | 42.5 |
| CDY66875 | Canola | mitochondrion | 6.92 | 41.88 |
| CDY28457 | Canola | cytoskeleton, cytosol, nucleus | 3.62 | 41.67 |
| CDY42984 | Canola | cytosol, mitochondrion, nucleus | 6.82 | 41.25 |
| CDY16234 | Canola | cytosol, mitochondrion, nucleus | 3.82 | 41.11 |
| CDY14679 | Canola | cytosol, mitochondrion, nucleus | 3.82 | 41.11 |
| CDY03764 | Canola | cytosol | 6.82 | 40.74 |
| CDY40291 | Canola | cytoskeleton, cytosol, nucleus | 3.62 | 40.7 |
| CDY42979 | Canola | cytosol, mitochondrion, nucleus | 6.1 | 40.69 |
| KRG99216 | Soybean | nucleus | 51.34 | 35.99 |
| KRH45772 | Soybean | nucleus | 51.65 | 35.84 |
| CDX68358 | Canola | nucleus | 47.21 | 35.59 |
| CDY23527 | Canola | nucleus | 47.31 | 35.39 |
| CDY11625 | Canola | nucleus | 47.0 | 35.27 |
| CDY38781 | Canola | nucleus | 46.28 | 34.76 |
| CDY42983 | Canola | nucleus | 5.68 | 33.95 |
| PGSC0003DMT400058222 | Potato | nucleus | 47.52 | 33.7 |
| Solyc05g006540.2.1 | Tomato | nucleus | 47.11 | 33.53 |
| CDX91007 | Canola | nucleus | 43.7 | 31.97 |
| CDX78604 | Canola | nucleus | 44.32 | 31.78 |
| CDX85568 | Canola | nucleus | 43.7 | 31.66 |
| CDX70587 | Canola | nucleus | 44.11 | 31.51 |
| CDY28683 | Canola | mitochondrion, nucleus | 43.29 | 31.13 |
| KRH45776 | Soybean | nucleus | 25.62 | 26.9 |
| CDY70453 | Canola | cytosol | 9.19 | 26.57 |
| CDY28682 | Canola | nucleus | 32.64 | 25.5 |
| CDY64433 | Canola | cytosol | 6.71 | 24.53 |
| CDY03763 | Canola | cytosol | 7.13 | 24.21 |
| CDY42986 | Canola | cytosol | 4.44 | 20.57 |
| CDY71516 | Canola | cytosol, mitochondrion, nucleus | 5.27 | 19.62 |
| CDY16235 | Canola | mitochondrion | 5.89 | 16.96 |
| CDY14678 | Canola | cytosol | 5.79 | 16.18 |
Protein Annotations
| Gene3D:1.20.1160.11 | MapMan:35.1 | GO:A0A078I7P2 | UniProt:A0A078I7P2 | EnsemblPlants:CDY45153 | ProteinID:CDY45153 |
| ProteinID:CDY45153.1 | ncoils:Coil | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| EnsemblPlantsGene:GSBRNA2T00081571001 | InterPro:HDAC_interact_dom | InterPro:IPR003822 | InterPro:PAH | InterPro:PAH_sf | PFAM:PF02671 |
| PFAM:PF08295 | PFAM:PF16879 | PFscan:PS51477 | PANTHER:PTHR12346 | PANTHER:PTHR12346:SF21 | SMART:SM00761 |
| SUPFAM:SSF47762 | InterPro:Sin3_C | UniParc:UPI0004EDE99F | SEG:seg | : | : |
Description
BnaA09g14390DBnaA09g14390D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I7P2]
Coordinates
chrLK032616:+:176909..182166
Molecular Weight (calculated)
109024.0 Da
IEP (calculated)
5.425
GRAVY (calculated)
-0.664
Length
968 amino acids
Sequence
(BLAST)
(BLAST)
001: MKRVREEVYV ERGGHAVSSR GETNGKALTI GGGGNMGGLT TGDALSYLKA VKDMFQDKKD KYDTFLEVMK DFKAQRVDTS GVIARVRVLF KGYDDLLLGF
101: NTFLPKGYKI TLPEKKAVDF GEAIEFVNKI KARFGSDDRA YKKFLDILNM YRKESKSISD VYQEVTLLFQ DHEDLLVEFA HFLPDNSGPG SAHYPLSGSN
201: AVPGAPVPAM HPRNFEKRIK IRNECTEHSD QREDGDENLV ACSAGNSLGK SLINQGQWTG YLKVEDKEGI QDYENGSKDN GTHKILLSNS NHVAKGINEL
301: DLSECAQCSP SYRLLPDDYL IQIPSYRNTL GEKVLNDHWV SVTSGSEDYS FKHMRKNQYE ESLFRCEDDR FELDMLLESV NAAITRVEAL LEKINNNTIS
401: IETPICLVAE IKDISDRKHI EDPLHAIAVG TKPSFTPDVE FSYTDTQVHA DLYQLIKYYC EEICATEQSD KVMKLWVTFL EPMFGVPSRS QTDETVIDVA
501: KSKDNQEQRE AVKDNTRGGS PVSNLKPLTP PKTPNKENPT IGSSFAGAAM NTEDSQPKLV SPKDLVIEDL ENRSKVSVVS MGEPHKVERE EGELSPTESF
601: EHDNSEVCRD NGVESVQKLP DNVRSNTSPE DDGSKPTQKL LEANENASKV PASGSKFGGQ VSLDEEHKRA MNCDQLDESF STFSERLHQM LYERILSAKI
701: HSERKWKAPD RDNTSPDSYT RFMDALYNLL DGSSDNTKFE DECRAIIGAQ SYILFTLDKL VQKFVKHLHA VAADETDTRL LQLQTYESYR KPGRFFEIVY
801: HENARALLHD QNIYRIEYSS AQTRLSIQLM NSGNDQPEVT AVAVEPGFAN YLQNEFLSLL PDEEKPGLFL KRNKAKMSGL DESSGMSRAM EGLKIINEVE
901: CKMACSSSKV KYEPNTSDLL YRSKQKIPKL SPNGLDNDKT TPSSSEISRK ERKSRFHTSL NRRLVSLR
101: NTFLPKGYKI TLPEKKAVDF GEAIEFVNKI KARFGSDDRA YKKFLDILNM YRKESKSISD VYQEVTLLFQ DHEDLLVEFA HFLPDNSGPG SAHYPLSGSN
201: AVPGAPVPAM HPRNFEKRIK IRNECTEHSD QREDGDENLV ACSAGNSLGK SLINQGQWTG YLKVEDKEGI QDYENGSKDN GTHKILLSNS NHVAKGINEL
301: DLSECAQCSP SYRLLPDDYL IQIPSYRNTL GEKVLNDHWV SVTSGSEDYS FKHMRKNQYE ESLFRCEDDR FELDMLLESV NAAITRVEAL LEKINNNTIS
401: IETPICLVAE IKDISDRKHI EDPLHAIAVG TKPSFTPDVE FSYTDTQVHA DLYQLIKYYC EEICATEQSD KVMKLWVTFL EPMFGVPSRS QTDETVIDVA
501: KSKDNQEQRE AVKDNTRGGS PVSNLKPLTP PKTPNKENPT IGSSFAGAAM NTEDSQPKLV SPKDLVIEDL ENRSKVSVVS MGEPHKVERE EGELSPTESF
601: EHDNSEVCRD NGVESVQKLP DNVRSNTSPE DDGSKPTQKL LEANENASKV PASGSKFGGQ VSLDEEHKRA MNCDQLDESF STFSERLHQM LYERILSAKI
701: HSERKWKAPD RDNTSPDSYT RFMDALYNLL DGSSDNTKFE DECRAIIGAQ SYILFTLDKL VQKFVKHLHA VAADETDTRL LQLQTYESYR KPGRFFEIVY
801: HENARALLHD QNIYRIEYSS AQTRLSIQLM NSGNDQPEVT AVAVEPGFAN YLQNEFLSLL PDEEKPGLFL KRNKAKMSGL DESSGMSRAM EGLKIINEVE
901: CKMACSSSKV KYEPNTSDLL YRSKQKIPKL SPNGLDNDKT TPSSSEISRK ERKSRFHTSL NRRLVSLR
0001: MKRAREDVHT DTQKRKPEVS SRGETNKLPR TIDALTYLKA VKDIFHDNKE KYESFLELMK EFKAQTIDTN GVIERIKVLF KGYRDLLLGF NTFLPKGYKI
0101: TLLPEEEKPK IRVDFKDAIG FVTKIKTRFG DDEHAYKRFL DILNLYRKEK KSISEVYEEV TMLFKGHEDL LMEFVNFLPN CPESAPSTKN AVPRHKGTAT
0201: TAMHSDKKRK QRCKLEDYSG HSDQREDGDE NLVTCSADSP VGEGQPGYFR DYENREDTET DTADRTEKSA ASGSQDIGNH KSTTKYVGTP INELDLSECT
0301: QCTPSYRLLP KDYAVEIPSY RNTLGKKTLN DHLVSVTSGS EDYSFSHMRK NQYEESLFRC EDDRYEMDML LGSVSSAIKQ VEILLEKMNN NTISVDSTIC
0401: IEKHLSAMNL RCIERLYGDN GLDVMDLLKK NMHSALPVIL TRLKQKQEEW ARCHSDFQKV WAEVYAKNHH KSLDHRSFYF KQQDSKNLST KCLVAEVKDI
0501: SEKKHQEDLL QAIAVRVMPL FTPDLEFNYC DTQIHEDLYL LIKYYCEEIC ATEQSDKVMK LWITFLEPIF GILSRSQDNL ALEDVSKLKN NRELQDACLA
0601: VKETASGSNR KHPISPKRLS KDNTKMQGSS SREDVSANIK VKTAQPDKLQ DDAAMTNEVI QSSKFVSPKN DQIMEDEGNH MVNAASVEKH ELEEGELSPT
0701: ASREQSNFEV NGQNAFKPLQ KVTDNVRSNK DKQSCDKKGA KNKTRAEDDK QENCHKLSEN NKTASEMLVS GTKVSCHEEN NRVMNCNGRG SVAGEMANGN
0801: QGEDGSFAFS ERFLQTVKPV AKHLSWPLQA SETCSQNDSQ VFYGNDSYYV LFRLHQMLYE RIQTAKKHSE KKWKAADNTT PDSYPRFMDA LYNLLDGSID
0901: NTKFEDECRA IFGAQSYVLF TLDKLVQKFV KHLHSVASDE TDTKLLQLHA YENYRKPGKF FDLVYHENAC ALLHEANIYR IRYSSEGTRL SIQLMNSGNN
1001: QLEVMGVAME PAFADYLQNK CLKSVNDEEN HGLFLNRNKK KFTSLDESRG MPVAMERLNI INEMECRMAC SSSKVKYVAN TSDLLYRSKQ GKPNSRVSEI
1101: LKQRRISRFH IMLNCRLCAL PL
0101: TLLPEEEKPK IRVDFKDAIG FVTKIKTRFG DDEHAYKRFL DILNLYRKEK KSISEVYEEV TMLFKGHEDL LMEFVNFLPN CPESAPSTKN AVPRHKGTAT
0201: TAMHSDKKRK QRCKLEDYSG HSDQREDGDE NLVTCSADSP VGEGQPGYFR DYENREDTET DTADRTEKSA ASGSQDIGNH KSTTKYVGTP INELDLSECT
0301: QCTPSYRLLP KDYAVEIPSY RNTLGKKTLN DHLVSVTSGS EDYSFSHMRK NQYEESLFRC EDDRYEMDML LGSVSSAIKQ VEILLEKMNN NTISVDSTIC
0401: IEKHLSAMNL RCIERLYGDN GLDVMDLLKK NMHSALPVIL TRLKQKQEEW ARCHSDFQKV WAEVYAKNHH KSLDHRSFYF KQQDSKNLST KCLVAEVKDI
0501: SEKKHQEDLL QAIAVRVMPL FTPDLEFNYC DTQIHEDLYL LIKYYCEEIC ATEQSDKVMK LWITFLEPIF GILSRSQDNL ALEDVSKLKN NRELQDACLA
0601: VKETASGSNR KHPISPKRLS KDNTKMQGSS SREDVSANIK VKTAQPDKLQ DDAAMTNEVI QSSKFVSPKN DQIMEDEGNH MVNAASVEKH ELEEGELSPT
0701: ASREQSNFEV NGQNAFKPLQ KVTDNVRSNK DKQSCDKKGA KNKTRAEDDK QENCHKLSEN NKTASEMLVS GTKVSCHEEN NRVMNCNGRG SVAGEMANGN
0801: QGEDGSFAFS ERFLQTVKPV AKHLSWPLQA SETCSQNDSQ VFYGNDSYYV LFRLHQMLYE RIQTAKKHSE KKWKAADNTT PDSYPRFMDA LYNLLDGSID
0901: NTKFEDECRA IFGAQSYVLF TLDKLVQKFV KHLHSVASDE TDTKLLQLHA YENYRKPGKF FDLVYHENAC ALLHEANIYR IRYSSEGTRL SIQLMNSGNN
1001: QLEVMGVAME PAFADYLQNK CLKSVNDEEN HGLFLNRNKK KFTSLDESRG MPVAMERLNI INEMECRMAC SSSKVKYVAN TSDLLYRSKQ GKPNSRVSEI
1101: LKQRRISRFH IMLNCRLCAL PL
Arabidopsis Description
SNL6Paired amphipathic helix protein Sin3-like 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9XIK6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.