Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY71516 | Canola | cytosol, mitochondrion, nucleus | 60.9 | 78.46 |
| CDY31595 | Canola | nucleus | 44.18 | 21.39 |
| CDY55065 | Canola | nucleus | 43.88 | 21.03 |
| CDX91007 | Canola | nucleus | 59.7 | 15.12 |
| CDX78604 | Canola | nucleus | 60.0 | 14.89 |
| CDX85568 | Canola | nucleus | 59.1 | 14.82 |
| CDX70587 | Canola | nucleus | 59.7 | 14.76 |
| CDY28682 | Canola | nucleus | 53.43 | 14.45 |
| CDY30912 | Canola | nucleus | 43.28 | 13.81 |
| CDY37976 | Canola | nucleus | 40.3 | 13.66 |
| CDY28683 | Canola | mitochondrion, nucleus | 53.73 | 13.37 |
| CDY24499 | Canola | nucleus | 43.58 | 13.16 |
| CDX93425 | Canola | nucleus | 39.4 | 12.99 |
| CDY33612 | Canola | nucleus | 43.88 | 12.75 |
| Zm00001d009729_P001 | Maize | nucleus | 9.25 | 12.65 |
| CDY38781 | Canola | nucleus | 44.18 | 11.48 |
| CDY11625 | Canola | nucleus | 44.18 | 11.47 |
| CDX68358 | Canola | nucleus | 42.99 | 11.21 |
| CDY23527 | Canola | nucleus | 43.28 | 11.21 |
| CDY45153 | Canola | nucleus | 26.57 | 9.19 |
| CDY08301 | Canola | cytosol | 2.69 | 3.24 |
| CDY42986 | Canola | cytosol | 1.49 | 2.39 |
| CDY08302 | Canola | cytosol | 1.79 | 2.34 |
| CDY42983 | Canola | nucleus | 0.9 | 1.85 |
| CDY06480 | Canola | cytosol | 1.19 | 1.69 |
| CDY64433 | Canola | cytosol | 0.9 | 1.13 |
| CDY31594 | Canola | nucleus | 0.9 | 0.76 |
| CDY55066 | Canola | cytosol | 0.9 | 0.75 |
| CDY03763 | Canola | cytosol | 0.6 | 0.7 |
| CDY42984 | Canola | cytosol, mitochondrion, nucleus | 0.0 | 0.0 |
| CDY16235 | Canola | mitochondrion | 0.0 | 0.0 |
| CDY67989 | Canola | nucleus | 0.0 | 0.0 |
| CDY66875 | Canola | mitochondrion | 0.0 | 0.0 |
| CDY64434 | Canola | nucleus | 0.0 | 0.0 |
| CDY48381 | Canola | cytosol | 0.0 | 0.0 |
| CDY48380 | Canola | cytosol | 0.0 | 0.0 |
| CDY23528 | Canola | cytosol | 0.0 | 0.0 |
| CDY42981 | Canola | mitochondrion | 0.0 | 0.0 |
| CDY42979 | Canola | cytosol, mitochondrion, nucleus | 0.0 | 0.0 |
| CDY40291 | Canola | cytoskeleton, cytosol, nucleus | 0.0 | 0.0 |
| CDY23529 | Canola | cytosol | 0.0 | 0.0 |
| CDY16234 | Canola | cytosol, mitochondrion, nucleus | 0.0 | 0.0 |
| CDY14678 | Canola | cytosol | 0.0 | 0.0 |
| CDY03764 | Canola | cytosol | 0.0 | 0.0 |
| CDY28457 | Canola | cytoskeleton, cytosol, nucleus | 0.0 | 0.0 |
| CDY14679 | Canola | cytosol, mitochondrion, nucleus | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:CDY70453 | EnsemblPlantsGene:GSBRNA2T00003457001 | InterPro:Sin3_C | PANTHER:PTHR12346 | PFAM:PF16879 | ProteinID:CDY70453 |
| ProteinID:CDY70453.1 | UniParc:UPI0004EE5CA3 | UniProt:A0A078JS75 | MapMan:35.1 | : | : |
Description
BnaCnng68400DBnaCnng68400D protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A078JS75]
Coordinates
chrLK042166:+:3..1653
Molecular Weight (calculated)
39262.1 Da
IEP (calculated)
6.740
GRAVY (calculated)
-0.476
Length
335 amino acids
Sequence
(BLAST)
(BLAST)
001: KDPAAALPVI LTRLKQKQDE WTKCREDLNL VWADVYEKYH YKSLDHHSFS FKQQDSKFLS AKALVSEIKD LKKKSQKESN IPHLEYEYLD RSIHEDLFKL
101: VQFSCEEMWS NKEKMGKVLR LWNSFLELML GVPANEEIGN GAADKRSGDV DERVFYGNED FYVLFRLHRI LYERISLAKT YCTGGGEMNG PGEIQKILLV
201: HHILMQGIPY KPNRFENHEF EDECRAIIGN QSYVLFILDK LLYRLVKQQL QAVVADNVDN KLLQLYESGK SRNTVYYENA RILLHDENIY RMECVRTLIQ
301: SPHYVSPLRN SLLFIDPENL FQSSSPPRLS IQLMD
101: VQFSCEEMWS NKEKMGKVLR LWNSFLELML GVPANEEIGN GAADKRSGDV DERVFYGNED FYVLFRLHRI LYERISLAKT YCTGGGEMNG PGEIQKILLV
201: HHILMQGIPY KPNRFENHEF EDECRAIIGN QSYVLFILDK LLYRLVKQQL QAVVADNVDN KLLQLYESGK SRNTVYYENA RILLHDENIY RMECVRTLIQ
301: SPHYVSPLRN SLLFIDPENL FQSSSPPRLS IQLMD
0001: MKRIRDDVYA SGSQFRRPLG SSRGQLCGQS PVHGSGDTEE EEEGGSRRVS QKLTTNDALS YLREVKEMFQ DQREKYDRFL EVMKDFKAQR TDTGGVIARV
0101: KELFKGHNNL IYGFNTFLPK GYEITLIEED DALPKKTVEF EQAINFVNKI KMRFKHDEHV YKSFLEILNM YRKENKEIKE VYNEVSILFQ GHLDLLEQFT
0201: RFLPASLPSH SAAQHSRSQA QQYSDRGSDP PLLHQMQVEK ERRRERAVAL RGDYSVERYD LNDDKTMVKI QREQRKRLDK ENRARRGRDL DDREAGQDNL
0301: HHFPEKRKSS RRAEALEAYS GSASHSEKDN LKSMYKQAFV FCEKVKDRLC SQDDYQTFLK CLNIFSNGII QRKDLQNLVS DLLGKFPDLM DEFNQFFERC
0401: ESITDGFQRL AGVMSKKLFS SEEQLSRPMK VEEKESEHKP ELEAVKETEQ CKKEYMGKSI QELDLSDCEC CTPSYRLLPA DYPIPIASQR SELGAEVLND
0501: HWVSVTSGSE DYSFKHMRRN QYEESLFRCE DDRFELDMLL ESVSSAARSA ESLLNIITEK KISFSGSFRI EDHFTALNLR CIERLYGDHG LDVIDILNKN
0601: PATALPVILT RLKQKQGEWK KCRDDFDKVW ANVYAKNHYK SLDHRSFYFK QQDSKNLSAK SLLAEIKELK EKSQNDDDVL LSISAGYRQP INPNLEYEYL
0701: NRAIHEDMFK VVQFSCEELC STKEQLSKVL RLWENFLEAV LGVPPRAKGT DLVEDVVINP KTLDVNHSTS PNGEAAVSSG GDTARLASRK LKSAANGDEN
0801: SSSGTFKHGI GLLNKDSTGK ENLEDVEIAN RDGVACSAVK PQKEQETGNE AEKRFGKPIP MDISERAAIS SISIPSGAEN NHCVVGKEVL PGAHEIQAKP
0901: SDTLTDIHHD VDSIETVHST QGGDVGNSIV LANGLRSDSS KGTRNSDDPE GPSRNEKEEG ELSPNGDFED NFGVYKDHGV KSTSKPENSA EAEVEADAEV
1001: ENEDDADDVD SENASEASGT ESGGDVCSQD EDREEENGEH DEIDGKAESE GEAEGMDPHL LEGESELLPQ SERVLLSVRP LSKHVAAVLC DERTKDLQVF
1101: YGNDDFYVLF RLHQILYERI LYAKRNCSGG ELKSKNLKDT NAGDPYARFM RVLYGLLDGS AENTKFEDEC RAIIGNQSYV LFTLDKLIYR LVKQLQAIVA
1201: DEMDNKLLQL YEYEKSRKPG RVIDSVYYEN VRVLVHEENI YRLECSSLPS RLSIQLMDNI IEKPEAYAVS MDPTFASYMQ TELLSVSSGK KEEGHDIVLQ
1301: RNLTGLYDLC KAMEGVEVVN GLECKMSCSS YKIAYVLDTE DYFHRKKKKK KTEQLWQRNK VRVERFHRFL SA
0101: KELFKGHNNL IYGFNTFLPK GYEITLIEED DALPKKTVEF EQAINFVNKI KMRFKHDEHV YKSFLEILNM YRKENKEIKE VYNEVSILFQ GHLDLLEQFT
0201: RFLPASLPSH SAAQHSRSQA QQYSDRGSDP PLLHQMQVEK ERRRERAVAL RGDYSVERYD LNDDKTMVKI QREQRKRLDK ENRARRGRDL DDREAGQDNL
0301: HHFPEKRKSS RRAEALEAYS GSASHSEKDN LKSMYKQAFV FCEKVKDRLC SQDDYQTFLK CLNIFSNGII QRKDLQNLVS DLLGKFPDLM DEFNQFFERC
0401: ESITDGFQRL AGVMSKKLFS SEEQLSRPMK VEEKESEHKP ELEAVKETEQ CKKEYMGKSI QELDLSDCEC CTPSYRLLPA DYPIPIASQR SELGAEVLND
0501: HWVSVTSGSE DYSFKHMRRN QYEESLFRCE DDRFELDMLL ESVSSAARSA ESLLNIITEK KISFSGSFRI EDHFTALNLR CIERLYGDHG LDVIDILNKN
0601: PATALPVILT RLKQKQGEWK KCRDDFDKVW ANVYAKNHYK SLDHRSFYFK QQDSKNLSAK SLLAEIKELK EKSQNDDDVL LSISAGYRQP INPNLEYEYL
0701: NRAIHEDMFK VVQFSCEELC STKEQLSKVL RLWENFLEAV LGVPPRAKGT DLVEDVVINP KTLDVNHSTS PNGEAAVSSG GDTARLASRK LKSAANGDEN
0801: SSSGTFKHGI GLLNKDSTGK ENLEDVEIAN RDGVACSAVK PQKEQETGNE AEKRFGKPIP MDISERAAIS SISIPSGAEN NHCVVGKEVL PGAHEIQAKP
0901: SDTLTDIHHD VDSIETVHST QGGDVGNSIV LANGLRSDSS KGTRNSDDPE GPSRNEKEEG ELSPNGDFED NFGVYKDHGV KSTSKPENSA EAEVEADAEV
1001: ENEDDADDVD SENASEASGT ESGGDVCSQD EDREEENGEH DEIDGKAESE GEAEGMDPHL LEGESELLPQ SERVLLSVRP LSKHVAAVLC DERTKDLQVF
1101: YGNDDFYVLF RLHQILYERI LYAKRNCSGG ELKSKNLKDT NAGDPYARFM RVLYGLLDGS AENTKFEDEC RAIIGNQSYV LFTLDKLIYR LVKQLQAIVA
1201: DEMDNKLLQL YEYEKSRKPG RVIDSVYYEN VRVLVHEENI YRLECSSLPS RLSIQLMDNI IEKPEAYAVS MDPTFASYMQ TELLSVSSGK KEEGHDIVLQ
1301: RNLTGLYDLC KAMEGVEVVN GLECKMSCSS YKIAYVLDTE DYFHRKKKKK KTEQLWQRNK VRVERFHRFL SA
Arabidopsis Description
SNL1Paired amphipathic helix protein Sin3-like 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SRH9]
SUBAcon: [mitochondrion,nucleus]
SUBAcon: [mitochondrion,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.