Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY55066 | Canola | cytosol | 95.97 | 95.73 |
| CDY23529 | Canola | cytosol | 23.93 | 60.13 |
| CDY48380 | Canola | cytosol | 23.68 | 59.49 |
| CDY64434 | Canola | nucleus | 8.31 | 53.23 |
| CDY48381 | Canola | cytosol | 19.4 | 49.68 |
| CDY23528 | Canola | cytosol | 19.4 | 49.68 |
| CDY67989 | Canola | nucleus | 17.88 | 45.51 |
| CDY06480 | Canola | cytosol | 26.7 | 44.92 |
| CDY16234 | Canola | cytosol, mitochondrion, nucleus | 9.82 | 43.33 |
| CDY14679 | Canola | cytosol, mitochondrion, nucleus | 9.82 | 43.33 |
| CDY40291 | Canola | cytoskeleton, cytosol, nucleus | 9.07 | 41.86 |
| CDY28457 | Canola | cytoskeleton, cytosol, nucleus | 8.82 | 41.67 |
| CDY08302 | Canola | cytosol | 25.94 | 40.23 |
| CDY42981 | Canola | mitochondrion | 15.87 | 39.38 |
| CDY66875 | Canola | mitochondrion | 15.62 | 38.75 |
| CDY42979 | Canola | cytosol, mitochondrion, nucleus | 14.11 | 38.62 |
| CDY42984 | Canola | cytosol, mitochondrion, nucleus | 15.37 | 38.12 |
| CDY08301 | Canola | cytosol | 26.45 | 37.77 |
| CDY03764 | Canola | cytosol | 15.37 | 37.65 |
| CDY45153 | Canola | nucleus | 77.83 | 31.92 |
| CDY42983 | Canola | nucleus | 12.85 | 31.48 |
| Bra017891.1-P | Field mustard | nucleus | 77.33 | 31.33 |
| CDY24499 | Canola | nucleus | 87.15 | 31.2 |
| CDY33612 | Canola | nucleus | 86.4 | 29.75 |
| CDY30912 | Canola | nucleus | 76.32 | 28.86 |
| AT1G59890.2 | Thale cress | nucleus | 78.34 | 26.65 |
| CDY64433 | Canola | cytosol | 16.88 | 25.28 |
| CDY03763 | Canola | cytosol | 17.13 | 23.86 |
| CDY37976 | Canola | nucleus | 58.19 | 23.38 |
| CDX93425 | Canola | nucleus | 58.94 | 23.03 |
| KRH45776 | Soybean | nucleus | 52.64 | 22.67 |
| CDY42986 | Canola | cytosol | 10.58 | 20.1 |
| CDY11625 | Canola | nucleus | 55.67 | 17.13 |
| CDY38781 | Canola | nucleus | 54.91 | 16.91 |
| CDX68358 | Canola | nucleus | 54.41 | 16.82 |
| KRG99216 | Soybean | nucleus | 58.19 | 16.73 |
| KRH45772 | Soybean | nucleus | 58.69 | 16.7 |
| CDY23527 | Canola | nucleus | 54.16 | 16.62 |
| CDY16235 | Canola | mitochondrion | 13.6 | 16.07 |
| CDX91007 | Canola | nucleus | 52.9 | 15.87 |
| CDX85568 | Canola | nucleus | 53.4 | 15.87 |
| CDX70587 | Canola | nucleus | 54.16 | 15.87 |
| CDX78604 | Canola | nucleus | 53.65 | 15.78 |
| PGSC0003DMT400058222 | Potato | nucleus | 53.65 | 15.6 |
| Solyc05g006540.2.1 | Tomato | nucleus | 52.9 | 15.44 |
| CDY14678 | Canola | cytosol | 13.35 | 15.32 |
| CDY28683 | Canola | mitochondrion, nucleus | 51.39 | 15.16 |
| CDY28682 | Canola | nucleus | 25.44 | 8.15 |
| CDY71516 | Canola | cytosol, mitochondrion, nucleus | 2.02 | 3.08 |
| CDY70453 | Canola | cytosol | 0.76 | 0.9 |
| CDY31595 | Canola | nucleus | 0.76 | 0.43 |
| CDY55065 | Canola | nucleus | 0.76 | 0.43 |
Protein Annotations
| Gene3D:1.20.1160.11 | MapMan:35.1 | GO:A0A078H2G2 | UniProt:A0A078H2G2 | EnsemblPlants:CDY31594 | ProteinID:CDY31594 |
| ProteinID:CDY31594.1 | ncoils:Coil | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| EnsemblPlantsGene:GSBRNA2T00050098001 | InterPro:HDAC_interact_dom | InterPro:IPR003822 | InterPro:PAH | InterPro:PAH_sf | PFAM:PF02671 |
| PFAM:PF08295 | PFscan:PS51477 | PANTHER:PTHR12346 | SMART:SM00761 | SUPFAM:SSF47762 | UniParc:UPI0004EE4C84 |
| SEG:seg | : | : | : | : | : |
Description
BnaA03g54580DBnaA03g54580D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H2G2]
Coordinates
chrLK032275:+:208..2351
Molecular Weight (calculated)
45045.9 Da
IEP (calculated)
5.892
GRAVY (calculated)
-0.711
Length
397 amino acids
Sequence
(BLAST)
(BLAST)
001: MKRVREEVYV EAQTRGQTVS SRGETNGSRP LTIGGGGGNM GGLTTNDALS YLKAVKDMFQ DKKDKYDTFL ALMKDFKAQR VNTDGVIEKV KELFKGYDDL
101: LLGFNTFLPK GYRITLPEKK PVDFDEAIDF VNKIKARFGN DVRAYRRFLD ILNMYKKEGK SISTVYQEVT LLFQGHEDLL AEFVSFLPNN SGSDSAQYPL
201: SARSALPAMH PMHFDKRMKF GSRPDEYTDQ REDGDENLVA AGDSRGKSLN QGQWRQVEDN EDGHENVVFG NGSHKNNMAK GINELDLSDC VQCTPSYRHL
301: PDDYPIPTSS YRNSLGEKVL NDHWVSVTSG SEDYSFKHMR KNQYEESLFR CEDDRFELDM LLESVNAAIK RVETLLEKIN NNTVSTPICI KDHLSGK
101: LLGFNTFLPK GYRITLPEKK PVDFDEAIDF VNKIKARFGN DVRAYRRFLD ILNMYKKEGK SISTVYQEVT LLFQGHEDLL AEFVSFLPNN SGSDSAQYPL
201: SARSALPAMH PMHFDKRMKF GSRPDEYTDQ REDGDENLVA AGDSRGKSLN QGQWRQVEDN EDGHENVVFG NGSHKNNMAK GINELDLSDC VQCTPSYRHL
301: PDDYPIPTSS YRNSLGEKVL NDHWVSVTSG SEDYSFKHMR KNQYEESLFR CEDDRFELDM LLESVNAAIK RVETLLEKIN NNTVSTPICI KDHLSGK
0001: MKRAREDVHT DTQKRKPEVS SRGETNKLPR TIDALTYLKA VKDIFHDNKE KYESFLELMK EFKAQTIDTN GVIERIKVLF KGYRDLLLGF NTFLPKGYKI
0101: TLLPEEEKPK IRVDFKDAIG FVTKIKTRFG DDEHAYKRFL DILNLYRKEK KSISEVYEEV TMLFKGHEDL LMEFVNFLPN CPESAPSTKN AVPRHKGTAT
0201: TAMHSDKKRK QRCKLEDYSG HSDQREDGDE NLVTCSADSP VGEGQPGYFR DYENREDTET DTADRTEKSA ASGSQDIGNH KSTTKYVGTP INELDLSECT
0301: QCTPSYRLLP KDYAVEIPSY RNTLGKKTLN DHLVSVTSGS EDYSFSHMRK NQYEESLFRC EDDRYEMDML LGSVSSAIKQ VEILLEKMNN NTISVDSTIC
0401: IEKHLSAMNL RCIERLYGDN GLDVMDLLKK NMHSALPVIL TRLKQKQEEW ARCHSDFQKV WAEVYAKNHH KSLDHRSFYF KQQDSKNLST KCLVAEVKDI
0501: SEKKHQEDLL QAIAVRVMPL FTPDLEFNYC DTQIHEDLYL LIKYYCEEIC ATEQSDKVMK LWITFLEPIF GILSRSQDNL ALEDVSKLKN NRELQDACLA
0601: VKETASGSNR KHPISPKRLS KDNTKMQGSS SREDVSANIK VKTAQPDKLQ DDAAMTNEVI QSSKFVSPKN DQIMEDEGNH MVNAASVEKH ELEEGELSPT
0701: ASREQSNFEV NGQNAFKPLQ KVTDNVRSNK DKQSCDKKGA KNKTRAEDDK QENCHKLSEN NKTASEMLVS GTKVSCHEEN NRVMNCNGRG SVAGEMANGN
0801: QGEDGSFAFS ERFLQTVKPV AKHLSWPLQA SETCSQNDSQ VFYGNDSYYV LFRLHQMLYE RIQTAKKHSE KKWKAADNTT PDSYPRFMDA LYNLLDGSID
0901: NTKFEDECRA IFGAQSYVLF TLDKLVQKFV KHLHSVASDE TDTKLLQLHA YENYRKPGKF FDLVYHENAC ALLHEANIYR IRYSSEGTRL SIQLMNSGNN
1001: QLEVMGVAME PAFADYLQNK CLKSVNDEEN HGLFLNRNKK KFTSLDESRG MPVAMERLNI INEMECRMAC SSSKVKYVAN TSDLLYRSKQ GKPNSRVSEI
1101: LKQRRISRFH IMLNCRLCAL PL
0101: TLLPEEEKPK IRVDFKDAIG FVTKIKTRFG DDEHAYKRFL DILNLYRKEK KSISEVYEEV TMLFKGHEDL LMEFVNFLPN CPESAPSTKN AVPRHKGTAT
0201: TAMHSDKKRK QRCKLEDYSG HSDQREDGDE NLVTCSADSP VGEGQPGYFR DYENREDTET DTADRTEKSA ASGSQDIGNH KSTTKYVGTP INELDLSECT
0301: QCTPSYRLLP KDYAVEIPSY RNTLGKKTLN DHLVSVTSGS EDYSFSHMRK NQYEESLFRC EDDRYEMDML LGSVSSAIKQ VEILLEKMNN NTISVDSTIC
0401: IEKHLSAMNL RCIERLYGDN GLDVMDLLKK NMHSALPVIL TRLKQKQEEW ARCHSDFQKV WAEVYAKNHH KSLDHRSFYF KQQDSKNLST KCLVAEVKDI
0501: SEKKHQEDLL QAIAVRVMPL FTPDLEFNYC DTQIHEDLYL LIKYYCEEIC ATEQSDKVMK LWITFLEPIF GILSRSQDNL ALEDVSKLKN NRELQDACLA
0601: VKETASGSNR KHPISPKRLS KDNTKMQGSS SREDVSANIK VKTAQPDKLQ DDAAMTNEVI QSSKFVSPKN DQIMEDEGNH MVNAASVEKH ELEEGELSPT
0701: ASREQSNFEV NGQNAFKPLQ KVTDNVRSNK DKQSCDKKGA KNKTRAEDDK QENCHKLSEN NKTASEMLVS GTKVSCHEEN NRVMNCNGRG SVAGEMANGN
0801: QGEDGSFAFS ERFLQTVKPV AKHLSWPLQA SETCSQNDSQ VFYGNDSYYV LFRLHQMLYE RIQTAKKHSE KKWKAADNTT PDSYPRFMDA LYNLLDGSID
0901: NTKFEDECRA IFGAQSYVLF TLDKLVQKFV KHLHSVASDE TDTKLLQLHA YENYRKPGKF FDLVYHENAC ALLHEANIYR IRYSSEGTRL SIQLMNSGNN
1001: QLEVMGVAME PAFADYLQNK CLKSVNDEEN HGLFLNRNKK KFTSLDESRG MPVAMERLNI INEMECRMAC SSSKVKYVAN TSDLLYRSKQ GKPNSRVSEI
1101: LKQRRISRFH IMLNCRLCAL PL
Arabidopsis Description
SNL6Paired amphipathic helix protein Sin3-like 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9XIK6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.