Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX68358 | Canola | nucleus | 94.44 | 95.17 |
| Bra003967.1-P | Field mustard | nucleus | 94.36 | 92.85 |
| CDY11625 | Canola | nucleus | 85.01 | 85.27 |
| CDY38781 | Canola | nucleus | 84.39 | 84.72 |
| AT1G70060.2 | Thale cress | nucleus | 81.45 | 79.49 |
| CDY23529 | Canola | cytosol | 8.27 | 67.72 |
| CDY48380 | Canola | cytosol | 8.11 | 66.46 |
| CDY23528 | Canola | cytosol | 7.26 | 60.65 |
| CDY48381 | Canola | cytosol | 7.26 | 60.65 |
| CDY64434 | Canola | nucleus | 2.78 | 58.06 |
| VIT_01s0026g01010.t01 | Wine grape | nucleus | 61.21 | 54.58 |
| CDY31594 | Canola | nucleus | 16.62 | 54.16 |
| CDY55066 | Canola | cytosol | 16.54 | 53.77 |
| KRH69432 | Soybean | nucleus | 59.27 | 53.64 |
| KRH74716 | Soybean | nucleus | 54.02 | 53.16 |
| GSMUA_Achr1P20690_001 | Banana | nucleus | 54.4 | 52.5 |
| CDY14679 | Canola | cytosol, mitochondrion, nucleus | 3.63 | 52.22 |
| CDY30912 | Canola | nucleus | 41.73 | 51.43 |
| CDY16234 | Canola | cytosol, mitochondrion, nucleus | 3.55 | 51.11 |
| TraesCS1B01G002000.1 | Wheat | nucleus | 50.39 | 50.27 |
| CDY37976 | Canola | nucleus | 38.18 | 50.0 |
| CDX93425 | Canola | nucleus | 39.1 | 49.8 |
| HORVU1Hr1G000290.3 | Barley | nucleus | 50.93 | 49.51 |
| TraesCS1A01G002700.1 | Wheat | nucleus | 50.93 | 49.47 |
| Os01t0109700-01 | Rice | nucleus | 50.7 | 49.47 |
| CDY24499 | Canola | nucleus | 42.27 | 49.32 |
| TraesCS1D01G004900.4 | Wheat | nucleus | 51.0 | 49.07 |
| GSMUA_Achr9P00800_001 | Banana | nucleus | 52.86 | 49.0 |
| CDY40291 | Canola | cytoskeleton, cytosol, nucleus | 3.25 | 48.84 |
| CDY28457 | Canola | cytoskeleton, cytosol, nucleus | 3.17 | 48.81 |
| GSMUA_Achr2P09580_001 | Banana | nucleus | 50.93 | 48.38 |
| GSMUA_Achr11P... | Banana | nucleus | 51.31 | 48.19 |
| Zm00001d008429_P019 | Maize | nucleus | 53.17 | 47.68 |
| EES00449 | Sorghum | nucleus | 53.01 | 47.61 |
| Zm00001d040123_P007 | Maize | nucleus | 52.7 | 47.53 |
| CDY33612 | Canola | nucleus | 42.27 | 47.44 |
| CDY45153 | Canola | nucleus | 35.39 | 47.31 |
| KXG20992 | Sorghum | nucleus | 45.21 | 46.88 |
| TraesCSU01G039900.1 | Wheat | nucleus | 51.47 | 46.61 |
| CDX78604 | Canola | nucleus | 48.38 | 46.37 |
| TraesCS3B01G005900.1 | Wheat | nucleus | 51.16 | 46.16 |
| CDX70587 | Canola | nucleus | 48.3 | 46.13 |
| TraesCS3D01G007600.2 | Wheat | nucleus, plastid | 49.15 | 46.12 |
| CDY06480 | Canola | cytosol | 8.35 | 45.76 |
| CDY31595 | Canola | nucleus | 24.34 | 45.52 |
| CDY67989 | Canola | nucleus | 5.49 | 45.51 |
| CDX91007 | Canola | nucleus | 46.14 | 45.12 |
| CDY55065 | Canola | nucleus | 24.34 | 45.06 |
| Zm00001d035776_P004 | Maize | nucleus | 43.89 | 45.04 |
| CDY08302 | Canola | cytosol | 8.89 | 44.92 |
| CDX85568 | Canola | nucleus | 46.37 | 44.91 |
| Os05t0100500-01 | Rice | plastid | 12.44 | 43.75 |
| CDY08301 | Canola | cytosol | 9.35 | 43.53 |
| CDY71516 | Canola | cytosol, mitochondrion, nucleus | 8.73 | 43.46 |
| CDY70453 | Canola | cytosol | 11.21 | 43.28 |
| CDY28683 | Canola | mitochondrion, nucleus | 44.82 | 43.09 |
| HORVU3Hr1G000540.2 | Barley | plastid | 51.08 | 42.89 |
| CDY42981 | Canola | mitochondrion | 5.1 | 41.25 |
| CDY66875 | Canola | mitochondrion | 5.1 | 41.25 |
| CDY03764 | Canola | cytosol | 4.95 | 39.51 |
| CDY28682 | Canola | nucleus | 37.56 | 39.23 |
| CDY42984 | Canola | cytosol, mitochondrion, nucleus | 4.79 | 38.75 |
| CDY42979 | Canola | cytosol, mitochondrion, nucleus | 4.33 | 38.62 |
| CDY42983 | Canola | nucleus | 3.79 | 30.25 |
| Zm00001d041450_P002 | Maize | nucleus | 18.16 | 29.9 |
| CDY64433 | Canola | cytosol | 5.33 | 26.04 |
| CDY03763 | Canola | cytosol | 5.33 | 24.21 |
| Zm00001d041453_P001 | Maize | nucleus | 21.48 | 24.07 |
| CDY42986 | Canola | cytosol | 3.55 | 22.01 |
| CDY16235 | Canola | mitochondrion | 4.4 | 16.96 |
| CDY14678 | Canola | cytosol | 4.25 | 15.9 |
Protein Annotations
| Gene3D:1.20.1160.11 | MapMan:12.3.2.4.2 | GO:A0A078GEL3 | UniProt:A0A078GEL3 | EnsemblPlants:CDY23527 | ProteinID:CDY23527 |
| ProteinID:CDY23527.1 | ncoils:Coil | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| EnsemblPlantsGene:GSBRNA2T00022170001 | InterPro:HDAC_interact_dom | InterPro:IPR003822 | InterPro:PAH | InterPro:PAH_sf | PFAM:PF02671 |
| PFAM:PF08295 | PFAM:PF16879 | PFscan:PS51477 | PANTHER:PTHR12346 | PANTHER:PTHR12346:SF21 | SMART:SM00761 |
| SUPFAM:SSF47762 | InterPro:Sin3_C | UniParc:UPI0004EE2781 | SEG:seg | : | : |
Description
BnaC06g24960DBnaC06g24960D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GEL3]
Coordinates
chrLK032144:-:362468..368678
Molecular Weight (calculated)
146695.0 Da
IEP (calculated)
5.095
GRAVY (calculated)
-0.794
Length
1294 amino acids
Sequence
(BLAST)
(BLAST)
0001: MVGGGGSAQK LTTNDALAYL KAVKDKFADK REKYDEFLEV MKDFKAQRVD TSGVILRVKE LFKGNRELIL GFNTFLPKGF EITLLPEEDD QPLPKKPVEF
0101: EEAISFVNKI KTRFQGDDRV YKSFLDILNM YRKENKSITE VYQEVAILFR DHHDLLVEFT HFLPDTSGTT STNDLVKMSV RDRGGFKSLP TMRDSDKKDP
0201: INASHANRDF KTEHMELDQE RSLLKESKED VRRIDKKNDY MDDQKGHLLH SKKKLTLRDE DSTETSNQGR EGDKFCGAIA TSSTKDDKGH VQELAFVDRV
0301: KAKLNTSEYQ EFLRCLNLFS KEIISQPELQ SLVGNLIGGY PELMEAFRVF LVQCEKNDGL LSSIVTKKSL WSDGKFPQPT KSQDKDTDRE REKTERLRER
0401: DREKERLEKA AASQKWAKPI SELDLSNCEQ CTPSYRLLPK NYPIPIASQK MEIGSQVLND HWVSVTSGSE DYSFKHMRKN QYEESLFRCE DDRFELDMLL
0501: ESVNSATNRV EELLAKINNN ELKTDTPICV ENHLTALNIR CIERLYGDHG LDVIDLLKKN AYLALPVILT RLKQKQEEWG RCRSEFNKVW ADIYTKNYHR
0601: SLDHRSFYFK QQDSKNLSAK ALLAEIKEIS EKKRVEDDAL LALAGGNRRT ICSNMSFDYP DPDLHEDLYQ LIKYSCGEMC STEQLDKVMK VWTEFLEPMF
0701: GVPSRPQVAE DREDTVNSTT NQNIKSGDAS EGSPQNGATV ASTVRSNGPG KADRDVTGSK SSDDNIQNDK ISKNQTTPEE RPETKEAVTI ERVHSSNSPP
0801: VDGLIPQRNG KTSVLSIVAG LSNSTPKPGG LASRTEMESK PNHVNGTLAE TSNNQRSNEV SAGETKVERE EGELSPTGDF EEDNFAENDL DALSNGKNEN
0901: NLNKRSSGEN DANANDEGDE SAPRSSEGSG NTSHNGDVSG TESGDGEDCY PEDDNKAESE GEAEAEVGMS DAEGDRPVLP VYARSLLHVK PLSKYVPPAI
1001: LDKDNKDDSQ KKNSIVFYGN DSYYVLFRLH QILYDRILSA KINSSCPERM WKTSNSTNPA DSYARFMNAL YNLLDGTSDN SKFEDDCRAI IGTQSYVLFT
1101: LDKLIYKLIK HLQVVAADEM DSKLQQLYSY EKSRKPEKYL DDVYYENARV LLPDEEVYRI ECEISAPTTL SIQLLDYGHD KPDVTSISMD PTFAAYLQNQ
1201: FLSSQAKVKE NPRIYLNRNK RKNGGDDELC TTDGVKIING LECKITCSSS KVSYVFDTED VLHRVKRTKV LNQSSDSLIR ERRIQRYQKL LTSQ
0101: EEAISFVNKI KTRFQGDDRV YKSFLDILNM YRKENKSITE VYQEVAILFR DHHDLLVEFT HFLPDTSGTT STNDLVKMSV RDRGGFKSLP TMRDSDKKDP
0201: INASHANRDF KTEHMELDQE RSLLKESKED VRRIDKKNDY MDDQKGHLLH SKKKLTLRDE DSTETSNQGR EGDKFCGAIA TSSTKDDKGH VQELAFVDRV
0301: KAKLNTSEYQ EFLRCLNLFS KEIISQPELQ SLVGNLIGGY PELMEAFRVF LVQCEKNDGL LSSIVTKKSL WSDGKFPQPT KSQDKDTDRE REKTERLRER
0401: DREKERLEKA AASQKWAKPI SELDLSNCEQ CTPSYRLLPK NYPIPIASQK MEIGSQVLND HWVSVTSGSE DYSFKHMRKN QYEESLFRCE DDRFELDMLL
0501: ESVNSATNRV EELLAKINNN ELKTDTPICV ENHLTALNIR CIERLYGDHG LDVIDLLKKN AYLALPVILT RLKQKQEEWG RCRSEFNKVW ADIYTKNYHR
0601: SLDHRSFYFK QQDSKNLSAK ALLAEIKEIS EKKRVEDDAL LALAGGNRRT ICSNMSFDYP DPDLHEDLYQ LIKYSCGEMC STEQLDKVMK VWTEFLEPMF
0701: GVPSRPQVAE DREDTVNSTT NQNIKSGDAS EGSPQNGATV ASTVRSNGPG KADRDVTGSK SSDDNIQNDK ISKNQTTPEE RPETKEAVTI ERVHSSNSPP
0801: VDGLIPQRNG KTSVLSIVAG LSNSTPKPGG LASRTEMESK PNHVNGTLAE TSNNQRSNEV SAGETKVERE EGELSPTGDF EEDNFAENDL DALSNGKNEN
0901: NLNKRSSGEN DANANDEGDE SAPRSSEGSG NTSHNGDVSG TESGDGEDCY PEDDNKAESE GEAEAEVGMS DAEGDRPVLP VYARSLLHVK PLSKYVPPAI
1001: LDKDNKDDSQ KKNSIVFYGN DSYYVLFRLH QILYDRILSA KINSSCPERM WKTSNSTNPA DSYARFMNAL YNLLDGTSDN SKFEDDCRAI IGTQSYVLFT
1101: LDKLIYKLIK HLQVVAADEM DSKLQQLYSY EKSRKPEKYL DDVYYENARV LLPDEEVYRI ECEISAPTTL SIQLLDYGHD KPDVTSISMD PTFAAYLQNQ
1201: FLSSQAKVKE NPRIYLNRNK RKNGGDDELC TTDGVKIING LECKITCSSS KVSYVFDTED VLHRVKRTKV LNQSSDSLIR ERRIQRYQKL LTSQ
0001: MVGGSSAQKL TTNDALAYLK AVKDKFQDKR DKYDEFLEVM KDFKAQRVDT TGVILRVKEL FKGNRELILG FNTFLPKGFE ITLRPEDDQP AAPKKPVEFE
0101: EAISFVNKIK TRFQGDDRVY KSFLDILNMY RKENKSITEV YHEVAILFRD HHDLLGEFTH FLPDTSATAS TNDSVKVPVR DRGIKSLPTM RQIDLDKKDR
0201: IITSHPNRAL KTENMDVDHE RSLLKDSKEE VRRIDKKNDF MDDRDRKDYR GLDHDSHKEH FFNSKKKLIR KDDDSAEMSD QAREGDKFSG AIPSSSTYDE
0301: KGHSQELAFV DRVKAKLDTA DNQEFLRCLN LYSKEIISQP ELQSLVSDLI GVYPDLMDAF KVFLAQCDKN DGLLSGIVSK KSLWSEGKCP QPTKSLDKDT
0401: DREREKIERY RERDREKERL EKVAASQKWA KPISELDLSN CEQCTPSYRR LPKNYPIPIA SQKMEIGSQV LNDHWVSVTS GSEDYSFKHM RKNQYEESLF
0501: KCEDDRFELD MLLESVISAT NRVEELLAKI NSNELKTDTP ICIEDHLTAL NLRCIERLYS DHGLDVLDLL KKNAYLALPV ILTRLKQKQE EWARCRTEFN
0601: KVWADIYTKN YHRSLDHRSF YFKQQDSKNL STKALLAEIK EISEKKRGED DALLALAAGN RRTISSNMSF DYPDPDLHED LYQLIKYSCG EMCSTEQLDK
0701: VMKVWTEFLE PIFGVPSRPQ GAEDREDAVK STNHDREDQE DAVSPQNGAS IANSMRSNGP RKVNESNQVR QASELDKDVT SSKTSDALLS CDNTQNDKMP
0801: KNLTTPDERA ETKQAVSIER AHNSNALPLD GLLPQRNGKI SSLSVAGLSN SNPKPALTSG TEELKPNYVN GPRVEIGDNP VIPNGTVAEW FAGEAKVERE
0901: EGELSPTGDF EEDNYAVHGE NDMEALSKSK ENDATADDAS APRSSDGSGN TSHNGDVSGT DSGDGEDCYR EDDIDHNKVE SEGEAEEGMS DGHDDTEGDM
1001: PVLSISVKNL LHVKPLAKYV PPALYDKDND DSRKNSQVFY GNDSFYVLFR LHQILYDRIL SAKINSSSPD RKWKTSNPTN PADSYARIMD ALYNLLDGTS
1101: DNSKFEDDCR AIIGTQSYVL FTLDKLIYKL IKHLQAVAAD EMDNKLQQLY AYEKSRKPEK FLDAVYYENA LVLLPDEDIY RIECEQSTPS KLSIQLLDYG
1201: HDKPDVTSIS MDPTFAAYLH NVFLSYQPNA KENPRIYLKR NKRKNGGDDE LCTTDEVKII NGLECKITCS SSKVSYVLDT EDVLHRAKRR KLLNQSGLPL
1301: AHDSVCSGSL IRQRRTQRYQ KLLTGQ
0101: EAISFVNKIK TRFQGDDRVY KSFLDILNMY RKENKSITEV YHEVAILFRD HHDLLGEFTH FLPDTSATAS TNDSVKVPVR DRGIKSLPTM RQIDLDKKDR
0201: IITSHPNRAL KTENMDVDHE RSLLKDSKEE VRRIDKKNDF MDDRDRKDYR GLDHDSHKEH FFNSKKKLIR KDDDSAEMSD QAREGDKFSG AIPSSSTYDE
0301: KGHSQELAFV DRVKAKLDTA DNQEFLRCLN LYSKEIISQP ELQSLVSDLI GVYPDLMDAF KVFLAQCDKN DGLLSGIVSK KSLWSEGKCP QPTKSLDKDT
0401: DREREKIERY RERDREKERL EKVAASQKWA KPISELDLSN CEQCTPSYRR LPKNYPIPIA SQKMEIGSQV LNDHWVSVTS GSEDYSFKHM RKNQYEESLF
0501: KCEDDRFELD MLLESVISAT NRVEELLAKI NSNELKTDTP ICIEDHLTAL NLRCIERLYS DHGLDVLDLL KKNAYLALPV ILTRLKQKQE EWARCRTEFN
0601: KVWADIYTKN YHRSLDHRSF YFKQQDSKNL STKALLAEIK EISEKKRGED DALLALAAGN RRTISSNMSF DYPDPDLHED LYQLIKYSCG EMCSTEQLDK
0701: VMKVWTEFLE PIFGVPSRPQ GAEDREDAVK STNHDREDQE DAVSPQNGAS IANSMRSNGP RKVNESNQVR QASELDKDVT SSKTSDALLS CDNTQNDKMP
0801: KNLTTPDERA ETKQAVSIER AHNSNALPLD GLLPQRNGKI SSLSVAGLSN SNPKPALTSG TEELKPNYVN GPRVEIGDNP VIPNGTVAEW FAGEAKVERE
0901: EGELSPTGDF EEDNYAVHGE NDMEALSKSK ENDATADDAS APRSSDGSGN TSHNGDVSGT DSGDGEDCYR EDDIDHNKVE SEGEAEEGMS DGHDDTEGDM
1001: PVLSISVKNL LHVKPLAKYV PPALYDKDND DSRKNSQVFY GNDSFYVLFR LHQILYDRIL SAKINSSSPD RKWKTSNPTN PADSYARIMD ALYNLLDGTS
1101: DNSKFEDDCR AIIGTQSYVL FTLDKLIYKL IKHLQAVAAD EMDNKLQQLY AYEKSRKPEK FLDAVYYENA LVLLPDEDIY RIECEQSTPS KLSIQLLDYG
1201: HDKPDVTSIS MDPTFAAYLH NVFLSYQPNA KENPRIYLKR NKRKNGGDDE LCTTDEVKII NGLECKITCS SSKVSYVLDT EDVLHRAKRR KLLNQSGLPL
1301: AHDSVCSGSL IRQRRTQRYQ KLLTGQ
Arabidopsis Description
SNL4Paired amphipathic helix protein Sin3-like 4 [Source:UniProtKB/Swiss-Prot;Acc:O04539]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.