Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 2
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3B01G005900.1 | Wheat | nucleus | 97.9 | 97.56 |
| TraesCS3D01G007600.2 | Wheat | nucleus, plastid | 92.93 | 96.3 |
| HORVU3Hr1G000540.2 | Barley | plastid | 94.61 | 87.74 |
| Os01t0109700-01 | Rice | nucleus | 73.76 | 79.49 |
| EES00449 | Sorghum | nucleus | 78.94 | 78.28 |
| Zm00001d040123_P007 | Maize | nucleus | 77.61 | 77.28 |
| Zm00001d008429_P019 | Maize | nucleus | 77.54 | 76.78 |
| GSMUA_Achr1P20690_001 | Banana | nucleus | 60.6 | 64.58 |
| GSMUA_Achr9P00800_001 | Banana | nucleus | 60.81 | 62.25 |
| GSMUA_Achr11P... | Banana | nucleus | 57.59 | 59.72 |
| GSMUA_Achr2P09580_001 | Banana | nucleus | 56.82 | 59.62 |
| VIT_01s0026g01010.t01 | Wine grape | nucleus | 60.04 | 59.13 |
| CDY23529 | Canola | cytosol | 6.51 | 58.86 |
| CDY48380 | Canola | cytosol | 6.37 | 57.59 |
| KRH69432 | Soybean | nucleus | 55.28 | 55.24 |
| KRH74716 | Soybean | nucleus | 50.59 | 54.98 |
| AT1G70030.1 | Thale cress | cytosol | 6.09 | 54.38 |
| AT1G24200.1 | Thale cress | cytosol | 7.35 | 53.57 |
| CDY48381 | Canola | cytosol | 5.74 | 52.9 |
| CDY23528 | Canola | cytosol | 5.74 | 52.9 |
| Bra003968.1-P | Field mustard | cytosol | 5.74 | 52.9 |
| CDY38781 | Canola | nucleus | 46.96 | 52.06 |
| CDY11625 | Canola | nucleus | 46.96 | 52.02 |
| Bra016241.1-P | Field mustard | nucleus | 46.89 | 51.98 |
| AT1G70060.2 | Thale cress | nucleus | 48.08 | 51.81 |
| CDX68358 | Canola | nucleus | 46.4 | 51.64 |
| CDY23527 | Canola | nucleus | 46.61 | 51.47 |
| AT1G24190.3 | Thale cress | nucleus | 48.15 | 51.42 |
| Bra003967.1-P | Field mustard | nucleus | 46.33 | 50.34 |
Protein Annotations
| Gene3D:1.20.1160.11 | MapMan:12.3.2.4.2 | ncoils:Coil | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:HDAC_interact_dom | InterPro:IPR003822 | InterPro:PAH |
| InterPro:PAH_sf | PFAM:PF02671 | PFAM:PF08295 | PFAM:PF16879 | PFscan:PS51477 | PANTHER:PTHR12346 |
| PANTHER:PTHR12346:SF21 | SMART:SM00761 | SUPFAM:SSF47762 | InterPro:Sin3_C | EnsemblPlantsGene:TraesCSU01G039900 | EnsemblPlants:TraesCSU01G039900.1 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chrUn:+:32198491..32207315
Molecular Weight (calculated)
159805.0 Da
IEP (calculated)
6.022
GRAVY (calculated)
-0.803
Length
1429 amino acids
Sequence
(BLAST)
(BLAST)
0001: MKRSREDALA AAGSQPSKRI TTSSAAVARS DPSPPQPMPP AGSGSALVPA PPPQAVAALP TQPSGGSGAA TAAAAAAAGQ KLTTNDALVY LKAVKDKFQD
0101: NRAKYEEFLE VMRDFKSERI DTNGVIIRVK TLFNGYPELI LGFNTFLPKG FAIRLQQDEK KPVDFAEAIN FVNKIKSRFQ RDEHVYKSFL DILNMYRKDN
0201: KSIQDVYHEV AVLFSDHKDL LEEFQHFLPD TSVSPQAGAA PRGGLVKREA LMPPASRGHI EKPRAFPSHT DRDASVDRPD VDHDRQRQRE KNKERKAERD
0301: RRDYDRDEKD VEQDSKEVDV GQRKRKPFPS ANLAGAEAHQ GGHPEIHGIN SASASSYDNK DALKSGYTQE FHFCEKVKEK LEYDAYQEFL KCLHIYSQEI
0401: ITRSELKNLV SDILQHYPDL MDGFNEFLEH CENIDGFLAG VFSKKQPGRL IKTEDKERDK EHEREDRNRD RDKEREKERE RLHPKEGPSQ KPSIVKEKYL
0501: CKPISELDLS NCQRCTPSYR LLPKNYPMPP AGNKTDLGAT VLNDHWVSVT SGSEDYSFKH MRKNQYEESL FRCEDDRFEL DMLLESVNAA TKRVEELIEK
0601: MQDNSVKPES PIRIDEHLTP LNLRCIERLY GDHGLDVMDV LRRNASVALP VILSRLKQKQ EEWSRCRSDF NKVWADIYAK NYHKSLDHRS FYFKQQDSKN
0701: LSTKSLLTEI KEINEKKRKE DDVLIAIAAG NRRPIVPNMS FEYVDANIHD DLYKIVKYSC GEVCGSDQLD KVMRIWTTFL EPILGIPSRS HGAVDADLTK
0801: PKNGITKSGI ANVGESNASP DGVAAQQGHG DESMQQEQAP SAVARLSRLA KGVAADSQNG SHDADRTARR DEEASNAALN EVSAVSTQNM PTERSAGQHS
0901: HMKGNSETTP GVNASKSSHA GVSMAAGARA GHEVLPSTEG GETGKSGSSL NGGATSEGNK GRLFNEAAAS HNTSKVEREE GELSPNGDFE EDNFVPFEDG
1001: ASKTKEGSTS RTFKVRPGQV EPHAEAAGEN DADDEESTQR STEDSENASE AGEDASGSES GDGEHGSPED HDEEEDMDHD QDPKAESEGE AEGTTETHDV
1101: EGGMSLLGIS LPSSERFLYS AKPLAKHVPT SLHGREDRSS HVFYGNDSFY ILFRLHQMLY ERLLSAKTNS SSAEKKWRTS KDTNPPDLYA RFIKALYNLL
1201: DGTSDNTKFE DDCRAIIGTQ SYVLFTLDKL IYKVVKQLQA IATDEMDSKL LQLYMYEKSR SPGRFFDLVY HENARVLLHD ESMYRFECCS SPMRVSIQLM
1301: EYGHEKPEVT AVSIEPNFAS YLFSEYLSNS SGTMLPEGVF LGRNKRKHSN DGEPSDSLKA MDGIKVANGL ECKISCKTSK VSYVLDTEDF LFRLRKRRLS
1401: PGGNVADKSP TSKKYDAKVQ RFHLFLSKP
0101: NRAKYEEFLE VMRDFKSERI DTNGVIIRVK TLFNGYPELI LGFNTFLPKG FAIRLQQDEK KPVDFAEAIN FVNKIKSRFQ RDEHVYKSFL DILNMYRKDN
0201: KSIQDVYHEV AVLFSDHKDL LEEFQHFLPD TSVSPQAGAA PRGGLVKREA LMPPASRGHI EKPRAFPSHT DRDASVDRPD VDHDRQRQRE KNKERKAERD
0301: RRDYDRDEKD VEQDSKEVDV GQRKRKPFPS ANLAGAEAHQ GGHPEIHGIN SASASSYDNK DALKSGYTQE FHFCEKVKEK LEYDAYQEFL KCLHIYSQEI
0401: ITRSELKNLV SDILQHYPDL MDGFNEFLEH CENIDGFLAG VFSKKQPGRL IKTEDKERDK EHEREDRNRD RDKEREKERE RLHPKEGPSQ KPSIVKEKYL
0501: CKPISELDLS NCQRCTPSYR LLPKNYPMPP AGNKTDLGAT VLNDHWVSVT SGSEDYSFKH MRKNQYEESL FRCEDDRFEL DMLLESVNAA TKRVEELIEK
0601: MQDNSVKPES PIRIDEHLTP LNLRCIERLY GDHGLDVMDV LRRNASVALP VILSRLKQKQ EEWSRCRSDF NKVWADIYAK NYHKSLDHRS FYFKQQDSKN
0701: LSTKSLLTEI KEINEKKRKE DDVLIAIAAG NRRPIVPNMS FEYVDANIHD DLYKIVKYSC GEVCGSDQLD KVMRIWTTFL EPILGIPSRS HGAVDADLTK
0801: PKNGITKSGI ANVGESNASP DGVAAQQGHG DESMQQEQAP SAVARLSRLA KGVAADSQNG SHDADRTARR DEEASNAALN EVSAVSTQNM PTERSAGQHS
0901: HMKGNSETTP GVNASKSSHA GVSMAAGARA GHEVLPSTEG GETGKSGSSL NGGATSEGNK GRLFNEAAAS HNTSKVEREE GELSPNGDFE EDNFVPFEDG
1001: ASKTKEGSTS RTFKVRPGQV EPHAEAAGEN DADDEESTQR STEDSENASE AGEDASGSES GDGEHGSPED HDEEEDMDHD QDPKAESEGE AEGTTETHDV
1101: EGGMSLLGIS LPSSERFLYS AKPLAKHVPT SLHGREDRSS HVFYGNDSFY ILFRLHQMLY ERLLSAKTNS SSAEKKWRTS KDTNPPDLYA RFIKALYNLL
1201: DGTSDNTKFE DDCRAIIGTQ SYVLFTLDKL IYKVVKQLQA IATDEMDSKL LQLYMYEKSR SPGRFFDLVY HENARVLLHD ESMYRFECCS SPMRVSIQLM
1301: EYGHEKPEVT AVSIEPNFAS YLFSEYLSNS SGTMLPEGVF LGRNKRKHSN DGEPSDSLKA MDGIKVANGL ECKISCKTSK VSYVLDTEDF LFRLRKRRLS
1401: PGGNVADKSP TSKKYDAKVQ RFHLFLSKP
0001: MVGGGSAQKL TTNDALAYLK AVKDKFQDQR GKYDEFLEVM KNFKSQRVDT AGVITRVKEL FKGHQELILG FNTFLPKGFE ITLQPEDGQP PLKKRVEFEE
0101: AISFVNKIKT RFQGDDRVYK SFLDILNMYR RDSKSITEVY QEVAILFRDH SDLLVEFTHF LPDTSATASI PSVKTSVRER GVSLADKKDR IITPHPDHDY
0201: GTEHIDQDRE RPIKKENKEH MRGTNKENEH RDARDFEPHS KKEQFLNKKQ KLHIRGDDPA EISNQSKLSG AVPSSSTYDE KGAMKSYSQD LAIVDRVKEK
0301: LNASEYQEFL RCLNLFSKEI ISRPELQSLV GNLIGVYPDL MDSFIEFLVQ CEKNEGLLSG ILTKSKSTYL LQGEGKYPQP SLDNDRDQEH KRDDGLRDRD
0401: HEKERLEKAA ANLKWAKPIS ELDLSNCEQC TPSYRLLPKN YPISIASQKT EIGKLVLNDH WVSVTSGSED YSFSHMRKNQ YEESLFKCED DRFELDMLLE
0501: SVNSTTKHVE ELLTKINSNE LKTNSPIRVE DHLTALNLRC IERLYGDHGL DVMDVLKKNV SLALPVILTR LKQKQEEWAR CRSDFDKVWA EIYAKNYYKS
0601: LDHRSFYFKQ QDSKKLSMKA LLAEIKEITE KKREDDSLLA FAAGNRLSIS PDLEFDYPDH DLHEDLYQLI KYSCAEMCST EQLDKVMKIW TTFVEQIFGV
0701: PSRPQGAEDQ EDVVKSMNQN VKSGSSSAGE SEGSPHNYAS VADSRRSKSS RKANEHSQLG QTSNSERDGA AGRTSDALCE TAQHEKMLKN VVTSDEKPES
0801: KQAVSIERAH DSTALAVDGL LDQSNGGSSI VHMTGHCNNN LKPVTCGTEL ELKMNDGNGP KLEVGNKKLL TNGIAVEITS DQEMAGTSKV EREEGELSPN
0901: GDFEEDNFAV YAKTDFETFS KANDSTGNNI SGDRSREGEP SCLETRAEND AEGDENAARS SEDSRNEYEN GDVSGTESGG GEDPEDDLDN NNKGESEGEA
1001: ECMADAHDAE ENGSALPVSA RFLLHVKPLV KYVPSAIALH DKDKDSLKNS QVFYGNDSFY VLFRLHRILY ERILSAKVNS SSPEGKWRTS NTKNPTDSYA
1101: RFMTALYNLL DGTSDNAKFE DDCRAIIGTQ SYILFTLDKL IHKFIKHLQV VVADEMDNKL LQLYFYEKSR RPETIFDAVY YDNTRVLLPD ENIYRIECRL
1201: STPAKLSIQL MCNGLDKPDV TSVSIDPTFA AYLHNDFLSI QPNAREDRRI YLNRNKRKVC REDEQLYSTD EVKIKNGLEC KIACGSSKVS YVLETEDLLV
1301: RVKKRRKTLC HNQDSWVRQM RLQYYKNNFL
0101: AISFVNKIKT RFQGDDRVYK SFLDILNMYR RDSKSITEVY QEVAILFRDH SDLLVEFTHF LPDTSATASI PSVKTSVRER GVSLADKKDR IITPHPDHDY
0201: GTEHIDQDRE RPIKKENKEH MRGTNKENEH RDARDFEPHS KKEQFLNKKQ KLHIRGDDPA EISNQSKLSG AVPSSSTYDE KGAMKSYSQD LAIVDRVKEK
0301: LNASEYQEFL RCLNLFSKEI ISRPELQSLV GNLIGVYPDL MDSFIEFLVQ CEKNEGLLSG ILTKSKSTYL LQGEGKYPQP SLDNDRDQEH KRDDGLRDRD
0401: HEKERLEKAA ANLKWAKPIS ELDLSNCEQC TPSYRLLPKN YPISIASQKT EIGKLVLNDH WVSVTSGSED YSFSHMRKNQ YEESLFKCED DRFELDMLLE
0501: SVNSTTKHVE ELLTKINSNE LKTNSPIRVE DHLTALNLRC IERLYGDHGL DVMDVLKKNV SLALPVILTR LKQKQEEWAR CRSDFDKVWA EIYAKNYYKS
0601: LDHRSFYFKQ QDSKKLSMKA LLAEIKEITE KKREDDSLLA FAAGNRLSIS PDLEFDYPDH DLHEDLYQLI KYSCAEMCST EQLDKVMKIW TTFVEQIFGV
0701: PSRPQGAEDQ EDVVKSMNQN VKSGSSSAGE SEGSPHNYAS VADSRRSKSS RKANEHSQLG QTSNSERDGA AGRTSDALCE TAQHEKMLKN VVTSDEKPES
0801: KQAVSIERAH DSTALAVDGL LDQSNGGSSI VHMTGHCNNN LKPVTCGTEL ELKMNDGNGP KLEVGNKKLL TNGIAVEITS DQEMAGTSKV EREEGELSPN
0901: GDFEEDNFAV YAKTDFETFS KANDSTGNNI SGDRSREGEP SCLETRAEND AEGDENAARS SEDSRNEYEN GDVSGTESGG GEDPEDDLDN NNKGESEGEA
1001: ECMADAHDAE ENGSALPVSA RFLLHVKPLV KYVPSAIALH DKDKDSLKNS QVFYGNDSFY VLFRLHRILY ERILSAKVNS SSPEGKWRTS NTKNPTDSYA
1101: RFMTALYNLL DGTSDNAKFE DDCRAIIGTQ SYILFTLDKL IHKFIKHLQV VVADEMDNKL LQLYFYEKSR RPETIFDAVY YDNTRVLLPD ENIYRIECRL
1201: STPAKLSIQL MCNGLDKPDV TSVSIDPTFA AYLHNDFLSI QPNAREDRRI YLNRNKRKVC REDEQLYSTD EVKIKNGLEC KIACGSSKVS YVLETEDLLV
1301: RVKKRRKTLC HNQDSWVRQM RLQYYKNNFL
Arabidopsis Description
SNL3SIN3-like 3 [Source:TAIR;Acc:AT1G24190]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.