Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY48381 | Canola | cytosol | 37.76 | 47.74 |
| CDY23528 | Canola | cytosol | 37.76 | 47.74 |
| Bra003968.1-P | Field mustard | cytosol | 37.76 | 47.74 |
| AT1G70030.1 | Thale cress | cytosol | 38.78 | 47.5 |
| AT5G35610.1 | Thale cress | cytosol | 32.14 | 40.65 |
| AT5G15040.2 | Thale cress | cytoskeleton, cytosol, nucleus | 17.35 | 39.08 |
| AT5G15025.1 | Thale cress | cytosol, nucleus, peroxisome | 21.94 | 35.25 |
| AT1G27250.1 | Thale cress | nucleus | 22.45 | 32.12 |
| AT1G24210.1 | Thale cress | cytosol | 25.0 | 31.61 |
| Os05t0100500-01 | Rice | plastid | 50.0 | 26.63 |
| AT1G27240.1 | Thale cress | cytosol | 25.0 | 26.34 |
| AT1G27280.1 | Thale cress | cytosol | 29.08 | 25.33 |
| AT5G15030.1 | Thale cress | endoplasmic reticulum | 16.84 | 23.74 |
| AT1G27270.1 | Thale cress | cytosol | 28.06 | 22.82 |
| AT1G24230.1 | Thale cress | cytosol | 28.06 | 22.45 |
| AT1G27260.1 | Thale cress | cytosol | 25.0 | 22.07 |
| AT1G24250.1 | Thale cress | cytosol | 28.06 | 21.83 |
| AT1G23810.1 | Thale cress | cytosol, nucleus, peroxisome | 25.51 | 20.75 |
| AT1G27220.1 | Thale cress | nucleus | 19.39 | 20.65 |
| Zm00001d041450_P002 | Maize | nucleus | 43.88 | 10.94 |
| AT1G70060.2 | Thale cress | nucleus | 59.18 | 8.75 |
| AT1G24190.3 | Thale cress | nucleus | 59.69 | 8.74 |
| KRH74716 | Soybean | nucleus | 57.65 | 8.59 |
| AT1G59890.2 | Thale cress | nucleus | 50.0 | 8.4 |
| VIT_01s0026g01010.t01 | Wine grape | nucleus | 60.71 | 8.2 |
| GSMUA_Achr1P20690_001 | Banana | nucleus | 55.61 | 8.13 |
| GSMUA_Achr2P09580_001 | Banana | nucleus | 55.1 | 7.93 |
| KRH69432 | Soybean | nucleus | 57.65 | 7.9 |
| TraesCS1B01G002000.1 | Wheat | nucleus | 52.04 | 7.86 |
| GSMUA_Achr11P... | Banana | nucleus | 55.1 | 7.84 |
| GSMUA_Achr9P00800_001 | Banana | nucleus | 55.61 | 7.81 |
| Zm00001d041453_P001 | Maize | nucleus | 45.41 | 7.71 |
| TraesCS3D01G007600.2 | Wheat | nucleus, plastid | 54.08 | 7.69 |
| HORVU1Hr1G000290.3 | Barley | nucleus | 52.04 | 7.66 |
| TraesCS1A01G002700.1 | Wheat | nucleus | 52.04 | 7.66 |
| AT5G15020.1 | Thale cress | nucleus | 53.06 | 7.61 |
| TraesCS1D01G004900.4 | Wheat | nucleus | 52.04 | 7.58 |
| Zm00001d008429_P019 | Maize | nucleus | 55.61 | 7.55 |
| Zm00001d040123_P007 | Maize | nucleus | 55.1 | 7.53 |
| AT1G10450.3 | Thale cress | endoplasmic reticulum, plastid | 44.9 | 7.5 |
| EES00449 | Sorghum | nucleus | 54.59 | 7.43 |
| AT1G24220.1 | Thale cress | nucleus | 28.06 | 7.39 |
| TraesCS3B01G005900.1 | Wheat | nucleus | 54.08 | 7.39 |
| AT3G01320.1 | Thale cress | mitochondrion, nucleus | 51.53 | 7.36 |
| TraesCSU01G039900.1 | Wheat | nucleus | 53.57 | 7.35 |
| KXG20992 | Sorghum | nucleus | 45.92 | 7.21 |
| Zm00001d035776_P004 | Maize | nucleus | 45.41 | 7.06 |
| HORVU3Hr1G000540.2 | Barley | plastid | 54.08 | 6.88 |
| Os01t0109700-01 | Rice | nucleus | 42.86 | 6.33 |
| AT1G10250.1 | Thale cress | cytosol | 0.0 | 0.0 |
Protein Annotations
| Gene3D:1.20.1160.11 | MapMan:35.1 | EntrezGene:839034 | ProteinID:AEE30495.1 | ArrayExpress:AT1G24200 | EnsemblPlantsGene:AT1G24200 |
| RefSeq:AT1G24200 | TAIR:AT1G24200 | RefSeq:AT1G24200-TAIR-G | EnsemblPlants:AT1G24200.1 | TAIR:AT1G24200.1 | Unigene:At.51748 |
| UniProt:F4I964 | GO:GO:0000118 | GO:GO:0000122 | GO:GO:0000785 | GO:GO:0001106 | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0004407 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005654 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016575 | GO:GO:0016787 | GO:GO:0019538 |
| InterPro:IPR003822 | RefSeq:NP_173830.1 | InterPro:PAH | InterPro:PAH_sf | PFAM:PF02671 | PFscan:PS51477 |
| PANTHER:PTHR12346 | PANTHER:PTHR12346:SF8 | SUPFAM:SSF47762 | UniParc:UPI0000162EB4 | SEG:seg | : |
Description
Paired amphipathic helix (PAH2) superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4I964]
Coordinates
chr1:-:8571173..8572377
Molecular Weight (calculated)
22765.7 Da
IEP (calculated)
10.185
GRAVY (calculated)
-0.596
Length
196 amino acids
Sequence
(BLAST)
(BLAST)
001: MVGEGGAHKP TTNDALKYLR AVKAKFQGQR EKYDEFLQIM IDYKTQRIDI SGVIIRMKEL LKEQQGLLLG FNAFLPNGYM ITHHEQPSQK KPVELGEAIS
101: FINKIKTRFQ GDDRVYKSVL DILNMYRKDR KPITAVYREV AILFLDHNNL LVEFTHFLPA TPDKGYRNYS TNKVTKFSVY RKDSNADKKK MNLKGE
101: FINKIKTRFQ GDDRVYKSVL DILNMYRKDR KPITAVYREV AILFLDHNNL LVEFTHFLPA TPDKGYRNYS TNKVTKFSVY RKDSNADKKK MNLKGE
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.