Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d035776_P004 | Maize | nucleus | 84.78 | 83.9 |
| TraesCS1B01G002000.1 | Wheat | nucleus | 61.78 | 59.44 |
| TraesCS1A01G002700.1 | Wheat | nucleus | 63.14 | 59.16 |
| HORVU1Hr1G000290.3 | Barley | nucleus | 62.82 | 58.9 |
| TraesCS1D01G004900.4 | Wheat | nucleus | 63.22 | 58.66 |
| EES00449 | Sorghum | nucleus | 62.98 | 54.55 |
| CDY23529 | Canola | cytosol | 6.65 | 52.53 |
| GSMUA_Achr1P20690_001 | Banana | nucleus | 56.25 | 52.35 |
| GSMUA_Achr9P00800_001 | Banana | nucleus | 57.69 | 51.58 |
| CDY48380 | Canola | cytosol | 6.49 | 51.27 |
| GSMUA_Achr2P09580_001 | Banana | nucleus | 53.77 | 49.27 |
| GSMUA_Achr11P... | Banana | nucleus | 53.93 | 48.84 |
| Os05t0100500-01 | Rice | plastid | 14.34 | 48.64 |
| VIT_01s0026g01010.t01 | Wine grape | nucleus | 55.53 | 47.76 |
| KRH69432 | Soybean | nucleus | 53.37 | 46.57 |
| KRH74716 | Soybean | nucleus | 48.4 | 45.93 |
| AT1G24200.1 | Thale cress | cytosol | 7.21 | 45.92 |
| CDY23527 | Canola | nucleus | 46.88 | 45.21 |
| CDX68358 | Canola | nucleus | 46.39 | 45.09 |
| CDY11625 | Canola | nucleus | 46.39 | 44.88 |
| CDY38781 | Canola | nucleus | 46.15 | 44.69 |
| Bra016241.1-P | Field mustard | nucleus | 46.07 | 44.61 |
| Bra003967.1-P | Field mustard | nucleus | 46.31 | 43.95 |
| AT1G24190.3 | Thale cress | nucleus | 47.12 | 43.95 |
| AT1G70060.2 | Thale cress | nucleus | 46.55 | 43.82 |
| CDY48381 | Canola | cytosol | 5.05 | 40.65 |
| CDY23528 | Canola | cytosol | 5.05 | 40.65 |
| Bra003968.1-P | Field mustard | cytosol | 5.05 | 40.65 |
| AT1G70030.1 | Thale cress | cytosol | 5.21 | 40.62 |
| Zm00001d041450_P002 | Maize | nucleus | 25.08 | 39.82 |
| Zm00001d041453_P001 | Maize | nucleus | 29.01 | 31.34 |
| EES00446 | Sorghum | plastid | 3.21 | 30.77 |
| KXG22653 | Sorghum | nucleus | 15.38 | 22.94 |
Protein Annotations
| Gene3D:1.20.1160.11 | MapMan:12.3.2.4.2 | EntrezGene:8065349 | UniProt:A0A1B6P5W7 | ncoils:Coil | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:HDAC_interact_dom | InterPro:IPR003822 | EnsemblPlants:KXG20992 |
| ProteinID:KXG20992 | ProteinID:KXG20992.1 | InterPro:PAH | InterPro:PAH_sf | PFAM:PF02671 | PFAM:PF08295 |
| PFAM:PF16879 | PFscan:PS51477 | PANTHER:PTHR12346 | PANTHER:PTHR12346:SF21 | SMART:SM00761 | EnsemblPlantsGene:SORBI_3009G000100 |
| SUPFAM:SSF47762 | InterPro:Sin3_C | UniParc:UPI00081ACE69 | SEG:seg | : | : |
Description
hypothetical protein
Coordinates
chr9:-:10589..17002
Molecular Weight (calculated)
142934.0 Da
IEP (calculated)
5.943
GRAVY (calculated)
-0.792
Length
1248 amino acids
Sequence
(BLAST)
(BLAST)
0001: MARPPPSHGH GNGNGSGSGS ATTRDALAYL KAVKDRFQEK PHMYEQFIEV MRDFKTNRLD SAGVIARVKT LFHGYPDLIL GFNAFLPKGH SIRRQDILHK
0101: DKEPVDYPRA ITLVNRIKSR FQQQEHVYKS FLWILNMYRM HNKPIQDVYD EVTLLLHDHP DLLEEFIHFL PDTHTPPTKA ATTSKLRHDD KNAVMHSATR
0201: PHTVQRERAF SSTADWDSNV DRLDLERDIK KRCTEKEKIR NARRSQHRRG YKRNEKNDEY ENEDFDAERC GYKSQTKMEE GTGDDTIGGA TMSPFSFNCS
0301: HTQEFQFCEI VKAQIEPEAY QEFLKCLHIY SQEIITRSEL KRLVKDILQH YPDLVNGFND FLGHCENIDG FLEGTFNKIF WNEGQTPRMV KPVEKKRDKE
0401: HKGDSDPEKE RYKEREKSEK VLVFNSKEGA THEVTASPSK EKYNLCKPIS ELDLSNCQRC TPSYRLLPEN YQVPSASNRT DTEASVLNDL WVSVTSGSED
0501: YSSKHMRKNQ YEESLFRCED DRFELDMLLE SVTVAIKRVE KLVERMEGNS LKLDSSIHLD EHLTTLNMRC IERLYGDHGL DVVDVLQNNI GVTLPVILTR
0601: LRQKQEEWSR CQSDFNKVWA EVYSKIYHKS LDHRSFYFKQ QDKKNLNTKA LLSQIKEISE KNRKGDDVLP AIAAGNRWPL VPNMSFEYVD LDIHEDLYQI
0701: IKYSCGELCS SSDQVNKVMR IWTTFLEPLL GIHLRAHGTE DADMVKSERR TRKVGLACGW KRNNATAKGG NGSKSAGAES VAEFVGTNET IPSTRSRKHG
0801: RMTSLYGVGV HPFNEYSGSH NNLRPEREEG ELSPNGDFEE ENFGVFEDEA IDGTSKQNGD STSRSLQGRP KEVLKFSGKN HAGAENEANE RALRSAEDSE
0901: NASEAYEDAS GSESGGGEEF SHEDQEEEED DMDLDTKAKS DGGAEVNTEA QGLDGGISLP FSECLQSTVK PLSKYVSTAS PNHEEKLSHI FYGNDSFYVL
1001: FRLHQILYER ILSAKTNSST SDNNWKALKD KNSTDQYSRF ISALYNLLDG SSDHTKFEDE CRSIIGTQSY VLFTLDKLIY KIVKQLQVVA SDEIDNQLLQ
1101: LYLYEKSRSP GSFFDLVYHE NARALLHDDN IYRFECHSDP PGLSIQLMEY GNEKPELTAV SFDPTFSPYL YNDYLSSIDD TKLDDDVFLR RNKRKQGRND
1201: DSPASLKTMD NVMFANGLEC KISCKTSKVS YVLDTEDFLF RTRKRSSV
0101: DKEPVDYPRA ITLVNRIKSR FQQQEHVYKS FLWILNMYRM HNKPIQDVYD EVTLLLHDHP DLLEEFIHFL PDTHTPPTKA ATTSKLRHDD KNAVMHSATR
0201: PHTVQRERAF SSTADWDSNV DRLDLERDIK KRCTEKEKIR NARRSQHRRG YKRNEKNDEY ENEDFDAERC GYKSQTKMEE GTGDDTIGGA TMSPFSFNCS
0301: HTQEFQFCEI VKAQIEPEAY QEFLKCLHIY SQEIITRSEL KRLVKDILQH YPDLVNGFND FLGHCENIDG FLEGTFNKIF WNEGQTPRMV KPVEKKRDKE
0401: HKGDSDPEKE RYKEREKSEK VLVFNSKEGA THEVTASPSK EKYNLCKPIS ELDLSNCQRC TPSYRLLPEN YQVPSASNRT DTEASVLNDL WVSVTSGSED
0501: YSSKHMRKNQ YEESLFRCED DRFELDMLLE SVTVAIKRVE KLVERMEGNS LKLDSSIHLD EHLTTLNMRC IERLYGDHGL DVVDVLQNNI GVTLPVILTR
0601: LRQKQEEWSR CQSDFNKVWA EVYSKIYHKS LDHRSFYFKQ QDKKNLNTKA LLSQIKEISE KNRKGDDVLP AIAAGNRWPL VPNMSFEYVD LDIHEDLYQI
0701: IKYSCGELCS SSDQVNKVMR IWTTFLEPLL GIHLRAHGTE DADMVKSERR TRKVGLACGW KRNNATAKGG NGSKSAGAES VAEFVGTNET IPSTRSRKHG
0801: RMTSLYGVGV HPFNEYSGSH NNLRPEREEG ELSPNGDFEE ENFGVFEDEA IDGTSKQNGD STSRSLQGRP KEVLKFSGKN HAGAENEANE RALRSAEDSE
0901: NASEAYEDAS GSESGGGEEF SHEDQEEEED DMDLDTKAKS DGGAEVNTEA QGLDGGISLP FSECLQSTVK PLSKYVSTAS PNHEEKLSHI FYGNDSFYVL
1001: FRLHQILYER ILSAKTNSST SDNNWKALKD KNSTDQYSRF ISALYNLLDG SSDHTKFEDE CRSIIGTQSY VLFTLDKLIY KIVKQLQVVA SDEIDNQLLQ
1101: LYLYEKSRSP GSFFDLVYHE NARALLHDDN IYRFECHSDP PGLSIQLMEY GNEKPELTAV SFDPTFSPYL YNDYLSSIDD TKLDDDVFLR RNKRKQGRND
1201: DSPASLKTMD NVMFANGLEC KISCKTSKVS YVLDTEDFLF RTRKRSSV
0001: MVGGSSAQKL TTNDALAYLK AVKDKFQDKR DKYDEFLEVM KDFKAQRVDT TGVILRVKEL FKGNRELILG FNTFLPKGFE ITLRPEDDQP AAPKKPVEFE
0101: EAISFVNKIK TRFQGDDRVY KSFLDILNMY RKENKSITEV YHEVAILFRD HHDLLGEFTH FLPDTSATAS TNDSVKVPVR DRGIKSLPTM RQIDLDKKDR
0201: IITSHPNRAL KTENMDVDHE RSLLKDSKEE VRRIDKKNDF MDDRDRKDYR GLDHDSHKEH FFNSKKKLIR KDDDSAEMSD QAREGDKFSG AIPSSSTYDE
0301: KGHSQELAFV DRVKAKLDTA DNQEFLRCLN LYSKEIISQP ELQSLVSDLI GVYPDLMDAF KVFLAQCDKN DGLLSGIVSK KSLWSEGKCP QPTKSLDKDT
0401: DREREKIERY RERDREKERL EKVAASQKWA KPISELDLSN CEQCTPSYRR LPKNYPIPIA SQKMEIGSQV LNDHWVSVTS GSEDYSFKHM RKNQYEESLF
0501: KCEDDRFELD MLLESVISAT NRVEELLAKI NSNELKTDTP ICIEDHLTAL NLRCIERLYS DHGLDVLDLL KKNAYLALPV ILTRLKQKQE EWARCRTEFN
0601: KVWADIYTKN YHRSLDHRSF YFKQQDSKNL STKALLAEIK EISEKKRGED DALLALAAGN RRTISSNMSF DYPDPDLHED LYQLIKYSCG EMCSTEQLDK
0701: VMKVWTEFLE PIFGVPSRPQ GAEDREDAVK STNHDREDQE DAVSPQNGAS IANSMRSNGP RKVNESNQVR QASELDKDVT SSKTSDALLS CDNTQNDKMP
0801: KNLTTPDERA ETKQAVSIER AHNSNALPLD GLLPQRNGKI SSLSVAGLSN SNPKPALTSG TEELKPNYVN GPRVEIGDNP VIPNGTVAEW FAGEAKVERE
0901: EGELSPTGDF EEDNYAVHGE NDMEALSKSK ENDATADDAS APRSSDGSGN TSHNGDVSGT DSGDGEDCYR EDDIDHNKVE SEGEAEEGMS DGHDDTEGDM
1001: PVLSISVKNL LHVKPLAKYV PPALYDKDND DSRKNSQVFY GNDSFYVLFR LHQILYDRIL SAKINSSSPD RKWKTSNPTN PADSYARIMD ALYNLLDGTS
1101: DNSKFEDDCR AIIGTQSYVL FTLDKLIYKL IKHLQAVAAD EMDNKLQQLY AYEKSRKPEK FLDAVYYENA LVLLPDEDIY RIECEQSTPS KLSIQLLDYG
1201: HDKPDVTSIS MDPTFAAYLH NVFLSYQPNA KENPRIYLKR NKRKNGGDDE LCTTDEVKII NGLECKITCS SSKVSYVLDT EDVLHRAKRR KLLNQSGLPL
1301: AHDSVCSGSL IRQRRTQRYQ KLLTGQ
0101: EAISFVNKIK TRFQGDDRVY KSFLDILNMY RKENKSITEV YHEVAILFRD HHDLLGEFTH FLPDTSATAS TNDSVKVPVR DRGIKSLPTM RQIDLDKKDR
0201: IITSHPNRAL KTENMDVDHE RSLLKDSKEE VRRIDKKNDF MDDRDRKDYR GLDHDSHKEH FFNSKKKLIR KDDDSAEMSD QAREGDKFSG AIPSSSTYDE
0301: KGHSQELAFV DRVKAKLDTA DNQEFLRCLN LYSKEIISQP ELQSLVSDLI GVYPDLMDAF KVFLAQCDKN DGLLSGIVSK KSLWSEGKCP QPTKSLDKDT
0401: DREREKIERY RERDREKERL EKVAASQKWA KPISELDLSN CEQCTPSYRR LPKNYPIPIA SQKMEIGSQV LNDHWVSVTS GSEDYSFKHM RKNQYEESLF
0501: KCEDDRFELD MLLESVISAT NRVEELLAKI NSNELKTDTP ICIEDHLTAL NLRCIERLYS DHGLDVLDLL KKNAYLALPV ILTRLKQKQE EWARCRTEFN
0601: KVWADIYTKN YHRSLDHRSF YFKQQDSKNL STKALLAEIK EISEKKRGED DALLALAAGN RRTISSNMSF DYPDPDLHED LYQLIKYSCG EMCSTEQLDK
0701: VMKVWTEFLE PIFGVPSRPQ GAEDREDAVK STNHDREDQE DAVSPQNGAS IANSMRSNGP RKVNESNQVR QASELDKDVT SSKTSDALLS CDNTQNDKMP
0801: KNLTTPDERA ETKQAVSIER AHNSNALPLD GLLPQRNGKI SSLSVAGLSN SNPKPALTSG TEELKPNYVN GPRVEIGDNP VIPNGTVAEW FAGEAKVERE
0901: EGELSPTGDF EEDNYAVHGE NDMEALSKSK ENDATADDAS APRSSDGSGN TSHNGDVSGT DSGDGEDCYR EDDIDHNKVE SEGEAEEGMS DGHDDTEGDM
1001: PVLSISVKNL LHVKPLAKYV PPALYDKDND DSRKNSQVFY GNDSFYVLFR LHQILYDRIL SAKINSSSPD RKWKTSNPTN PADSYARIMD ALYNLLDGTS
1101: DNSKFEDDCR AIIGTQSYVL FTLDKLIYKL IKHLQAVAAD EMDNKLQQLY AYEKSRKPEK FLDAVYYENA LVLLPDEDIY RIECEQSTPS KLSIQLLDYG
1201: HDKPDVTSIS MDPTFAAYLH NVFLSYQPNA KENPRIYLKR NKRKNGGDDE LCTTDEVKII NGLECKITCS SSKVSYVLDT EDVLHRAKRR KLLNQSGLPL
1301: AHDSVCSGSL IRQRRTQRYQ KLLTGQ
Arabidopsis Description
SNL4Paired amphipathic helix protein Sin3-like 4 [Source:UniProtKB/Swiss-Prot;Acc:O04539]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.