Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_15s0024g01450.t01 | Wine grape | cytosol | 10.41 | 89.88 |
| KRH69432 | Soybean | nucleus | 74.02 | 75.1 |
| KRH74716 | Soybean | nucleus | 67.95 | 74.98 |
| GSMUA_Achr1P20690_001 | Banana | nucleus | 63.27 | 68.46 |
| CDY23529 | Canola | cytosol | 7.24 | 66.46 |
| GSMUA_Achr9P00800_001 | Banana | nucleus | 63.47 | 65.97 |
| CDY48380 | Canola | cytosol | 7.1 | 65.19 |
| VIT_14s0066g02330.t01 | Wine grape | nucleus | 61.2 | 64.12 |
| EES00449 | Sorghum | nucleus | 62.92 | 63.36 |
| Os01t0109700-01 | Rice | nucleus | 57.62 | 63.05 |
| Zm00001d040123_P007 | Maize | nucleus | 62.16 | 62.86 |
| Zm00001d008429_P019 | Maize | nucleus | 62.44 | 62.79 |
| GSMUA_Achr2P09580_001 | Banana | nucleus | 58.79 | 62.63 |
| GSMUA_Achr11P... | Banana | nucleus | 59.41 | 62.55 |
| CDY11625 | Canola | nucleus | 55.48 | 62.4 |
| CDY38781 | Canola | nucleus | 55.27 | 62.22 |
| Bra016241.1-P | Field mustard | nucleus | 55.2 | 62.14 |
| TraesCS1A01G002700.1 | Wheat | nucleus | 57.0 | 62.09 |
| TraesCS1B01G002000.1 | Wheat | nucleus | 55.27 | 61.84 |
| HORVU1Hr1G000290.3 | Barley | nucleus | 56.72 | 61.83 |
| AT1G70060.2 | Thale cress | nucleus | 56.37 | 61.69 |
| AT1G24190.3 | Thale cress | nucleus | 56.79 | 61.58 |
| TraesCS1D01G004900.4 | Wheat | nucleus | 57.0 | 61.49 |
| CDX68358 | Canola | nucleus | 54.31 | 61.37 |
| CDY23527 | Canola | nucleus | 54.58 | 61.21 |
| AT1G24200.1 | Thale cress | cytosol | 8.2 | 60.71 |
| TraesCSU01G039900.1 | Wheat | nucleus | 59.13 | 60.04 |
| Bra003967.1-P | Field mustard | nucleus | 54.38 | 60.0 |
| TraesCS3B01G005900.1 | Wheat | nucleus | 58.92 | 59.62 |
| TraesCS3D01G007600.2 | Wheat | nucleus, plastid | 56.65 | 59.61 |
| AT1G70030.1 | Thale cress | cytosol | 6.55 | 59.38 |
| CDY48381 | Canola | cytosol | 6.34 | 59.35 |
| CDY23528 | Canola | cytosol | 6.34 | 59.35 |
| Bra003968.1-P | Field mustard | cytosol | 6.34 | 59.35 |
| Os05t0100500-01 | Rice | plastid | 14.4 | 56.79 |
| KXG20992 | Sorghum | nucleus | 47.76 | 55.53 |
| HORVU3Hr1G000540.2 | Barley | plastid | 58.92 | 55.48 |
| Zm00001d035776_P004 | Maize | nucleus | 46.52 | 53.53 |
| VIT_17s0000g07540.t01 | Wine grape | nucleus | 4.76 | 37.1 |
| Zm00001d041450_P002 | Maize | nucleus | 18.54 | 34.22 |
| Zm00001d041453_P001 | Maize | nucleus | 21.92 | 27.53 |
Protein Annotations
| Gene3D:1.20.1160.11 | EntrezGene:100243213 | MapMan:12.3.2.4.2 | ProteinID:CCB56618 | ProteinID:CCB56618.1 | UniProt:F6HPJ0 |
| EMBL:FN596002 | GO:GO:0000118 | GO:GO:0000122 | GO:GO:0000785 | GO:GO:0001106 | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0004407 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005654 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016575 | GO:GO:0016787 | GO:GO:0019538 |
| InterPro:HDAC_interact_dom | InterPro:IPR003822 | InterPro:PAH | InterPro:PAH_sf | PFAM:PF02671 | PFAM:PF08295 |
| PFAM:PF16879 | PFscan:PS51477 | PANTHER:PTHR12346 | PANTHER:PTHR12346:SF21 | SMART:SM00761 | SUPFAM:SSF47762 |
| InterPro:Sin3_C | TIGR:TC63141 | UniParc:UPI000210856B | ArrayExpress:VIT_01s0026g01010 | EnsemblPlantsGene:VIT_01s0026g01010 | EnsemblPlants:VIT_01s0026g01010.t01 |
| RefSeq:XP_010652829.1 | RefSeq:XP_010652836.1 | RefSeq:XP_010652842.1 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr1:-:9947501..9962409
Molecular Weight (calculated)
164361.0 Da
IEP (calculated)
5.148
GRAVY (calculated)
-0.849
Length
1451 amino acids
Sequence
(BLAST)
(BLAST)
0001: MKRSRDDVYM GSQLKRPAVS SRGGEGSGQP QMMGGGTQKL TTNDALAYLK AVKDIFQDKR DKYDDFLEVM KDFKAQRIDT AGVIARVKEL FKGHRDLILG
0101: FNTFLPKGYE ITLPLEDEQP PVKKPVEFEE AINFVNKIKT RFQGDDHVYK SFLDILNMYR KENKSITEVY QEVAALFHDH PDLLVEFTHF LPDTSAASTQ
0201: YAPSGRNPMH RERGSLVPPL RQILTDKKER ITASHADRDL SVDRPDTDHD RIIMRADNQR RGGEKEKERR DDRDRRERDD RDFDHDGNRD FNGMPRVPHK
0301: RKVTRRVEDS VADQINQGGE GAENYGMRPM SSSYDDKNAL KSMYNQEFVF CEKVKEKLRQ SDSYQEFLKC LHIYSKEIIT RTELQSLVGD LIGKYPDLMD
0401: EFNEFLTRCE KIDGFLAGVM SKKSLWNEGH LPRSVKIEDR DRDRDRERDD RDKDRDRENR ERDRLDKSGG FGNKDAVNQK MSLFQNKEKY MAKPIQELDL
0501: SNCERCTPSY RLLPKNYPIP SASQRTELGA EVLNDYWVSV TSGSEDYSFK HMRKNQYEES LFRCEDDRFE LDMLLESVNV TTKRVEELLD KINNNTIKTD
0601: SPIRIEDYFT ALNLRCIERL YGDHGLDVMD VLRKNATLAL PVILTRLKQK QEEWARCRSD FNKVWAEIYA KNYHKSLDHR SFYFKQQDSK SSSTKALLAE
0701: IKEISEKKRK EDDVLLAIAA GNRRPIIPNL EFEYPDSDIH EDLYQLIKYS CGEVCTTEQL DKVMKIWTTF LEPMLGVPSR PQGAEDSEDV VKTKSHAAKN
0801: GAASIGESDG SPGGGASATN TKQINSSRNG DETIPPEQSS SCRVWMVNGD NGVKEDGSLD ADRMPRKADT FCASTQQGKM QTSAAMADEM SGVSKQATCN
0901: ERVTNSNASL ASGAEQSHGR TNMENTSGLN ATPSRASNTA LESGLELRPS NEVLPSSEVG DCIRPTISTN GVMTEGVKAH RYHEESAGNS KIEREEGELS
1001: PNGDFEEDNF AVYGDAGVEG KSKDTAASRQ YQTRHGVEEI CCGEAGGEND ADADDEGEES AQRSSEDSEN ASENGDVSGS ESGEGEECSR EEHEEDGDHD
1101: EHDNKAESEG EAEGMADAHD VEGDGTLLPF SERFLLTVKP LAKHVPPSLQ DKEKNSRVFY GNDSFYVLFR LHQTLYERMQ SAKLNSSSGE RKWRASSDTN
1201: STDLYARFMN ALYNLLDGSS DNTKFEDDCR AIIGTQSYVL FTLDKLIYKL VKQLQTVATD EMDNKLLQLY AYEKSRKPGR FVDMVYYENS RVLLHDENIY
1301: RIECSSAPTH LTIQLMDNGH DKPEVTAVSM DPNFAAYLNS DFLSVVNEKK KSGIFLRRNK RKYARGDEFS VACQAMEGLQ VVNGLECKIA CSSSKVSYVL
1401: DTEDFLFRVR KKRKTSVRKS SCHDQAKSSN GCSVNGFTDC FLPPNLPCCD S
0101: FNTFLPKGYE ITLPLEDEQP PVKKPVEFEE AINFVNKIKT RFQGDDHVYK SFLDILNMYR KENKSITEVY QEVAALFHDH PDLLVEFTHF LPDTSAASTQ
0201: YAPSGRNPMH RERGSLVPPL RQILTDKKER ITASHADRDL SVDRPDTDHD RIIMRADNQR RGGEKEKERR DDRDRRERDD RDFDHDGNRD FNGMPRVPHK
0301: RKVTRRVEDS VADQINQGGE GAENYGMRPM SSSYDDKNAL KSMYNQEFVF CEKVKEKLRQ SDSYQEFLKC LHIYSKEIIT RTELQSLVGD LIGKYPDLMD
0401: EFNEFLTRCE KIDGFLAGVM SKKSLWNEGH LPRSVKIEDR DRDRDRERDD RDKDRDRENR ERDRLDKSGG FGNKDAVNQK MSLFQNKEKY MAKPIQELDL
0501: SNCERCTPSY RLLPKNYPIP SASQRTELGA EVLNDYWVSV TSGSEDYSFK HMRKNQYEES LFRCEDDRFE LDMLLESVNV TTKRVEELLD KINNNTIKTD
0601: SPIRIEDYFT ALNLRCIERL YGDHGLDVMD VLRKNATLAL PVILTRLKQK QEEWARCRSD FNKVWAEIYA KNYHKSLDHR SFYFKQQDSK SSSTKALLAE
0701: IKEISEKKRK EDDVLLAIAA GNRRPIIPNL EFEYPDSDIH EDLYQLIKYS CGEVCTTEQL DKVMKIWTTF LEPMLGVPSR PQGAEDSEDV VKTKSHAAKN
0801: GAASIGESDG SPGGGASATN TKQINSSRNG DETIPPEQSS SCRVWMVNGD NGVKEDGSLD ADRMPRKADT FCASTQQGKM QTSAAMADEM SGVSKQATCN
0901: ERVTNSNASL ASGAEQSHGR TNMENTSGLN ATPSRASNTA LESGLELRPS NEVLPSSEVG DCIRPTISTN GVMTEGVKAH RYHEESAGNS KIEREEGELS
1001: PNGDFEEDNF AVYGDAGVEG KSKDTAASRQ YQTRHGVEEI CCGEAGGEND ADADDEGEES AQRSSEDSEN ASENGDVSGS ESGEGEECSR EEHEEDGDHD
1101: EHDNKAESEG EAEGMADAHD VEGDGTLLPF SERFLLTVKP LAKHVPPSLQ DKEKNSRVFY GNDSFYVLFR LHQTLYERMQ SAKLNSSSGE RKWRASSDTN
1201: STDLYARFMN ALYNLLDGSS DNTKFEDDCR AIIGTQSYVL FTLDKLIYKL VKQLQTVATD EMDNKLLQLY AYEKSRKPGR FVDMVYYENS RVLLHDENIY
1301: RIECSSAPTH LTIQLMDNGH DKPEVTAVSM DPNFAAYLNS DFLSVVNEKK KSGIFLRRNK RKYARGDEFS VACQAMEGLQ VVNGLECKIA CSSSKVSYVL
1401: DTEDFLFRVR KKRKTSVRKS SCHDQAKSSN GCSVNGFTDC FLPPNLPCCD S
0001: MVGGGSAQKL TTNDALAYLK AVKDKFQDQR GKYDEFLEVM KNFKSQRVDT AGVITRVKEL FKGHQELILG FNTFLPKGFE ITLQPEDGQP PLKKRVEFEE
0101: AISFVNKIKT RFQGDDRVYK SFLDILNMYR RDSKSITEVY QEVAILFRDH SDLLVEFTHF LPDTSATASI PSVKTSVRER GVSLADKKDR IITPHPDHDY
0201: GTEHIDQDRE RPIKKENKEH MRGTNKENEH RDARDFEPHS KKEQFLNKKQ KLHIRGDDPA EISNQSKLSG AVPSSSTYDE KGAMKSYSQD LAIVDRVKEK
0301: LNASEYQEFL RCLNLFSKEI ISRPELQSLV GNLIGVYPDL MDSFIEFLVQ CEKNEGLLSG ILTKKSLWSE GKYPQPSLDN DRDQEHKRDD GLRDRDHEKE
0401: RLEKAAANLK WAKPISELDL SNCEQCTPSY RLLPKNYPIS IASQKTEIGK LVLNDHWVSV TSGSEDYSFS HMRKNQYEES LFKCEDDRFE LDMLLESVNS
0501: TTKHVEELLT KINSNELKTN SPIRVEDHLT ALNLRCIERL YGDHGLDVMD VLKKNVSLAL PVILTRLKQK QEEWARCRSD FDKVWAEIYA KNYYKSLDHR
0601: SFYFKQQDSK KLSMKALLAE IKEITEKKRE DDSLLAFAAG NRLSISPDLE FDYPDHDLHE DLYQLIKYSC AEMCSTEQLD KVMKIWTTFV EQIFGVPSRP
0701: QGAEDQEDVV KSMNQNVKSG SSSAGESEGS PHNYASVADS RRSKSSRKAN EHSQLGQTSN SERDGAAGRT SDALCETAQH EKMLKNVVTS DEKPESKQAV
0801: SIERAHDSTA LAVDGLLDQS NGGSSIVHMT GHCNNNLKPV TCGTELELKM NDGNGPKLEV GNKKLLTNGI AVEITSDQEM AGTSKVEREE GELSPNGDFE
0901: EDNFAVYAKT DFETFSKAND STGNNISGDR SREGEPSCLE TRAENDAEGD ENAARSSEDS RNEYENGDVS GTESGGGEDP EDDLDNNNKG ESEGEAECMA
1001: DAHDAEENGS ALPVSARFLL HVKPLVKYVP SAIALHDKDK DSLKNSQVFY GNDSFYVLFR LHRILYERIL SAKVNSSSPE GKWRTSNTKN PTDSYARFMT
1101: ALYNLLDGTS DNAKFEDDCR AIIGTQSYIL FTLDKLIHKF IKHLQVVVAD EMDNKLLQLY FYEKSRRPET IFDAVYYDNT RVLLPDENIY RIECRLSTPA
1201: KLSIQLMCNG LDKPDVTSVS IDPTFAAYLH NDFLSIQPNA REDRRIYLNR NKRKVCREDE QLYSTDEVKI KNGLECKIAC GSSKVSYVLE TEDLLVRVKK
1301: RRKTLCHNQD SWRQNKNKSG NSPLLTSPDR AKLHSLSS
0101: AISFVNKIKT RFQGDDRVYK SFLDILNMYR RDSKSITEVY QEVAILFRDH SDLLVEFTHF LPDTSATASI PSVKTSVRER GVSLADKKDR IITPHPDHDY
0201: GTEHIDQDRE RPIKKENKEH MRGTNKENEH RDARDFEPHS KKEQFLNKKQ KLHIRGDDPA EISNQSKLSG AVPSSSTYDE KGAMKSYSQD LAIVDRVKEK
0301: LNASEYQEFL RCLNLFSKEI ISRPELQSLV GNLIGVYPDL MDSFIEFLVQ CEKNEGLLSG ILTKKSLWSE GKYPQPSLDN DRDQEHKRDD GLRDRDHEKE
0401: RLEKAAANLK WAKPISELDL SNCEQCTPSY RLLPKNYPIS IASQKTEIGK LVLNDHWVSV TSGSEDYSFS HMRKNQYEES LFKCEDDRFE LDMLLESVNS
0501: TTKHVEELLT KINSNELKTN SPIRVEDHLT ALNLRCIERL YGDHGLDVMD VLKKNVSLAL PVILTRLKQK QEEWARCRSD FDKVWAEIYA KNYYKSLDHR
0601: SFYFKQQDSK KLSMKALLAE IKEITEKKRE DDSLLAFAAG NRLSISPDLE FDYPDHDLHE DLYQLIKYSC AEMCSTEQLD KVMKIWTTFV EQIFGVPSRP
0701: QGAEDQEDVV KSMNQNVKSG SSSAGESEGS PHNYASVADS RRSKSSRKAN EHSQLGQTSN SERDGAAGRT SDALCETAQH EKMLKNVVTS DEKPESKQAV
0801: SIERAHDSTA LAVDGLLDQS NGGSSIVHMT GHCNNNLKPV TCGTELELKM NDGNGPKLEV GNKKLLTNGI AVEITSDQEM AGTSKVEREE GELSPNGDFE
0901: EDNFAVYAKT DFETFSKAND STGNNISGDR SREGEPSCLE TRAENDAEGD ENAARSSEDS RNEYENGDVS GTESGGGEDP EDDLDNNNKG ESEGEAECMA
1001: DAHDAEENGS ALPVSARFLL HVKPLVKYVP SAIALHDKDK DSLKNSQVFY GNDSFYVLFR LHRILYERIL SAKVNSSSPE GKWRTSNTKN PTDSYARFMT
1101: ALYNLLDGTS DNAKFEDDCR AIIGTQSYIL FTLDKLIHKF IKHLQVVVAD EMDNKLLQLY FYEKSRRPET IFDAVYYDNT RVLLPDENIY RIECRLSTPA
1201: KLSIQLMCNG LDKPDVTSVS IDPTFAAYLH NDFLSIQPNA REDRRIYLNR NKRKVCREDE QLYSTDEVKI KNGLECKIAC GSSKVSYVLE TEDLLVRVKK
1301: RRKTLCHNQD SWRQNKNKSG NSPLLTSPDR AKLHSLSS
Arabidopsis Description
SNL3SIN3-like 3 [Source:TAIR;Acc:AT1G24190]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.