Factsheet for VIT_17s0000g07540.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT5G15040.2	Thale cress	cytoskeleton, cytosol, nucleus	12.9	27.59
CDY67989	Canola	nucleus	21.51	25.64
CDY42979	Canola	cytosol, mitochondrion, nucleus	18.82	24.14
CDY03764	Canola	cytosol	19.89	22.84
CDY42984	Canola	cytosol, mitochondrion, nucleus	19.35	22.5
CDY66875	Canola	mitochondrion	18.82	21.88
CDY42981	Canola	mitochondrion	18.82	21.88
CDY42983	Canola	nucleus	18.28	20.99
AT5G15030.1	Thale cress	endoplasmic reticulum	14.52	19.42
AT1G24210.1	Thale cress	cytosol	15.59	18.71
Bra007893.1-P	Field mustard	cytosol	7.53	17.5
AT1G27240.1	Thale cress	cytosol	15.59	15.59
CDY03763	Canola	cytosol	20.97	13.68
AT1G24250.1	Thale cress	cytosol	18.28	13.49
AT1G27280.1	Thale cress	cytosol	16.13	13.33
AT1G23810.1	Thale cress	cytosol, nucleus, peroxisome	16.13	12.45
AT1G24230.1	Thale cress	cytosol	16.13	12.24
AT1G27260.1	Thale cress	cytosol	14.52	12.16
CDY42986	Canola	cytosol	12.9	11.48
AT1G27270.1	Thale cress	cytosol	12.9	9.96
Bra024644.1-P	Field mustard	mitochondrion	17.74	9.82
CDY16235	Canola	mitochondrion	17.74	9.82
Bra007894.1-P	Field mustard	nucleus	20.97	9.26
CDY14678	Canola	cytosol	17.2	9.25
AT1G24220.1	Thale cress	nucleus	20.43	5.11
VIT_14s0066g02330.t01	Wine grape	nucleus	36.56	4.91
VIT_01s0026g01010.t01	Wine grape	nucleus	37.1	4.76
VIT_15s0024g01450.t01	Wine grape	cytosol	3.23	3.57

Protein Annotations

Gene3D:1.20.1160.11	EntrezGene:100250081	wikigene:100250081	MapMan:35.1	ProteinID:CBI15101	ProteinID:CBI15101.3
UniProt:D7SHZ1	EMBL:FN594950	GO:GO:0000118	GO:GO:0000122	GO:GO:0000785	GO:GO:0001106
GO:GO:0003674	GO:GO:0003824	GO:GO:0004407	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005654	GO:GO:0006139	GO:GO:0006355	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0016575	GO:GO:0016787
GO:GO:0019538	InterPro:IPR003822	EntrezGene:LOC100250081	wikigene:LOC100250081	InterPro:PAH	InterPro:PAH_sf
PFAM:PF02671	PFscan:PS51477	PANTHER:PTHR12346	PANTHER:PTHR12346:SF8	SUPFAM:SSF47762	UniParc:UPI000198513A
ArrayExpress:VIT_17s0000g07540	EnsemblPlantsGene:VIT_17s0000g07540	EnsemblPlants:VIT_17s0000g07540.t01	RefSeq:XP_002280515	RefSeq:XP_002280515.1	SEG:seg

Description

No Description!

Coordinates

chr17:+:8528864..8536583

Molecular Weight (calculated)

21324.7 Da

IEP (calculated)

9.608

GRAVY (calculated)

-0.532

Length

186 amino acids

Sequence
(BLAST)

001: MADPYQPSPS SQSVSRARPE GKRTIEQGVE YLKFVRDTFG SRNDSRYRGF LRVMKDYKGG IFDTLEVISL VKEMFEGHHE LLTGFNILLP RGYSINSVAP
101: TKDPPTALEA RVEAVNLVNK IRTRLQDDKL YRSLVDVMCK YGRNPRVNIL LKEGLLGTCC GCHHLNLFTS QKCRNLWNLE NKTREQ

Best Arabidopsis Sequence Match ( AT1G24190.3 )
(BLAST)

0001: MVGGGSAQKL TTNDALAYLK AVKDKFQDQR GKYDEFLEVM KNFKSQRVDT AGVITRVKEL FKGHQELILG FNTFLPKGFE ITLQPEDGQP PLKKRVEFEE
0101: AISFVNKIKT RFQGDDRVYK SFLDILNMYR RDSKSITEVY QEVAILFRDH SDLLVEFTHF LPDTSATASI PSVKTSVRER GVSLADKKDR IITPHPDHDY
0201: GTEHIDQDRE RPIKKENKEH MRGTNKENEH RDARDFEPHS KKEQFLNKKQ KLHIRGDDPA EISNQSKLSG AVPSSSTYDE KGAMKSYSQD LAIVDRVKEK
0301: LNASEYQEFL RCLNLFSKEI ISRPELQSLV GNLIGVYPDL MDSFIEFLVQ CEKNEGLLSG ILTKKSLWSE GKYPQPSLDN DRDQEHKRDD GLRDRDHEKE
0401: RLEKAAANLK WAKPISELDL SNCEQCTPSY RLLPKNYPIS IASQKTEIGK LVLNDHWVSV TSGSEDYSFS HMRKNQYEES LFKCEDDRFE LDMLLESVNS
0501: TTKHVEELLT KINSNELKTN SPIRVEDHLT ALNLRCIERL YGDHGLDVMD VLKKNVSLAL PVILTRLKQK QEEWARCRSD FDKVWAEIYA KNYYKSLDHR
0601: SFYFKQQDSK KLSMKALLAE IKEITEKKRE DDSLLAFAAG NRLSISPDLE FDYPDHDLHE DLYQLIKYSC AEMCSTEQLD KVMKIWTTFV EQIFGVPSRP
0701: QGAEDQEDVV KSMNQNVKSG SSSAGESEGS PHNYASVADS RRSKSSRKAN EHSQLGQTSN SERDGAAGRT SDALCETAQH EKMLKNVVTS DEKPESKQAV
0801: SIERAHDSTA LAVDGLLDQS NGGSSIVHMT GHCNNNLKPV TCGTELELKM NDGNGPKLEV GNKKLLTNGI AVEITSDQEM AGTSKVEREE GELSPNGDFE
0901: EDNFAVYAKT DFETFSKAND STGNNISGDR SREGEPSCLE TRAENDAEGD ENAARSSEDS RNEYENGDVS GTESGGGEDP EDDLDNNNKG ESEGEAECMA
1001: DAHDAEENGS ALPVSARFLL HVKPLVKYVP SAIALHDKDK DSLKNSQVFY GNDSFYVLFR LHRILYERIL SAKVNSSSPE GKWRTSNTKN PTDSYARFMT
1101: ALYNLLDGTS DNAKFEDDCR AIIGTQSYIL FTLDKLIHKF IKHLQVVVAD EMDNKLLQLY FYEKSRRPET IFDAVYYDNT RVLLPDENIY RIECRLSTPA
1201: KLSIQLMCNG LDKPDVTSVS IDPTFAAYLH NDFLSIQPNA REDRRIYLNR NKRKVCREDE QLYSTDEVKI KNGLECKIAC GSSKVSYVLE TEDLLVRVKK
1301: RRKTLCHNQD SWRQNKNKSG NSPLLTSPDR AKLHSLSS

Arabidopsis Description

SNL3SIN3-like 3 [Source:TAIR;Acc:AT1G24190]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.