Factsheet for Bra007894.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY03763	Canola	cytosol	60.57	89.47
Bra007893.1-P	Field mustard	cytosol	13.54	71.25
AT5G15040.2	Thale cress	cytoskeleton, cytosol, nucleus	7.36	35.63
Bra003968.1-P	Field mustard	cytosol	12.59	34.19
Bra024645.1-P	Field mustard	cytosol, mitochondrion, nucleus	6.18	28.89
Bra012419.1-P	Field mustard	cytosol	5.7	27.91
Bra037065.1-P	Field mustard	nucleus	14.25	24.9
AT5G15030.1	Thale cress	endoplasmic reticulum	7.6	23.02
Bra037066.1-P	Field mustard	nucleus	14.96	22.66
VIT_17s0000g07540.t01	Wine grape	nucleus	9.26	20.97
Bra024644.1-P	Field mustard	mitochondrion	10.93	13.69
Bra027831.1-P	Field mustard	nucleus	17.81	10.05
Bra019933.1-P	Field mustard	nucleus	21.38	8.86
Bra017891.1-P	Field mustard	nucleus	20.19	8.67
Bra035418.1-P	Field mustard	nucleus	21.85	8.31
Bra023501.1-P	Field mustard	nucleus	23.99	7.56
Bra016241.1-P	Field mustard	nucleus	23.04	7.53
Bra040510.1-P	Field mustard	mitochondrion, nucleus	23.75	7.43
Bra006276.1-P	Field mustard	nucleus	23.75	7.43
Bra003967.1-P	Field mustard	nucleus	22.33	7.15
Bra008727.1-P	Field mustard	cytosol	6.18	6.58

Protein Annotations

Gene3D:1.20.1160.11	MapMan:35.1	EnsemblPlantsGene:Bra007894	EnsemblPlants:Bra007894.1	EnsemblPlants:Bra007894.1-P	ncoils:Coil
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR003822	UniProt:M4CUJ9
InterPro:PAH	InterPro:PAH_sf	PFAM:PF02671	PFscan:PS51477	PANTHER:PTHR12346	PANTHER:PTHR12346:SF8
SUPFAM:SSF47762	UniParc:UPI0002546885	SEG:seg	:	:	:

Description

AT1G10450 (E=2e-025) SNL6 | SNL6 (SIN3-LIKE 6)

Coordinates

chrA02:+:11686945..11691085

Molecular Weight (calculated)

48829.7 Da

IEP (calculated)

9.016

GRAVY (calculated)

-0.661

Length

421 amino acids

Sequence
(BLAST)

001: MIIKRQSARD VLEYLQIVLN RFPDNREIYD KITKLLKDLR LPRPGFTYND VISKVSQLFK EHKDLLLGFN QFLPPGYKIT LPEDQTQRKK PELRDASEFL
101: NKVKERLQDE HAYKSLLEIL RMFKENKKSF TEVHHEKDRI IDSHTDRDLK PEHRDLDHER SLLKESKEEI RRTGTKNDNS KKKLTLRADD SPEISNQARG
201: GDKFCGAVGT SSICDEKVAV AAAEKEWCES GTRCGGQREG QLKKERETRD VERALNVVEE MERAEEKFVK EMEVTRRNWE PASQVMTVVG VWRMDGGRRG
301: FDGRIVEKFE GFDMLWHVGL MEVRGVGEVR RKGKMVGEGF GEREGAFILM LNVARFCHDN IVTCSRDGSA IIWIPRSRRS HVMFNFAWSL DNRFVLAAIM
401: GNTFLMAESL SRPIFRALNS C

Best Arabidopsis Sequence Match ( AT1G70060.1 )
(BLAST)

0001: MVGGSSAQKL TTNDALAYLK AVKDKFQDKR DKYDEFLEVM KDFKAQRVDT TGVILRVKEL FKGNRELILG FNTFLPKGFE ITLRPEDDQP AAPKKPVEFE
0101: EAISFVNKIK TRFQGDDRVY KSFLDILNMY RKENKSITEV YHEVAILFRD HHDLLGEFTH FLPDTSATAS TNDSVKVPVR DRGIKSLPTM RQIDLDKKDR
0201: IITSHPNRAL KTENMDVDHE RSLLKDSKEE VRRIDKKNDF MDDRDRKDYR GLDHDSHKEH FFNSKKKLIR KDDDSAEMSD QAREGDKFSG AIPSSSTYDE
0301: KGHSQELAFV DRVKAKLDTA DNQEFLRCLN LYSKEIISQP ELQSLVSDLI GVYPDLMDAF KVFLAQCDKN DGLLSGIVSK KSLWSEGKCP QPTKSLDKDT
0401: DREREKIERY RERDREKERL EKVAASQKWA KPISELDLSN CEQCTPSYRR LPKNYPIPIA SQKMEIGSQV LNDHWVSVTS GSEDYSFKHM RKNQYEESLF
0501: KCEDDRFELD MLLESVISAT NRVEELLAKI NSNELKTDTP ICIEDHLTAL NLRCIERLYS DHGLDVLDLL KKNAYLALPV ILTRLKQKQE EWARCRTEFN
0601: KVWADIYTKN YHRSLDHRSF YFKQQDSKNL STKALLAEIK EISEKKRGED DALLALAAGN RRTISSNMSF DYPDPDLHED LYQLIKYSCG EMCSTEQLDK
0701: VMKVWTEFLE PIFGVPSRPQ GAEDREDAVK STNHDREDQE DAVSPQNGAS IANSMRSNGP RKVNESNQVR QASELDKDVT SSKTSDALLS CDNTQNDKMP
0801: KNLTTPDERA ETKQAVSIER AHNSNALPLD GLLPQRNGKI SSLSVAGLSN SNPKPALTSG TEELKPNYVN GPRVEIGDNP VIPNGTVAEW FAGEAKVERE
0901: EGELSPTGDF EEDNYAVHGE NDMEALSKSK ENDATADDAS APRSSDGSGN TSHNGDVSGT DSGDGEDCYR EDDIDHNKVE SEGEAEEGMS DGHDDTEGDM
1001: PVLSISVKNL LHVKPLAKYV PPALYDKDND DSRKNSQVFY GNDSFYVLFR LHQILYDRIL SAKINSSSPD RKWKTSNPTN PADSYARIMD ALYNLLDGTS
1101: DNSKFEDDCR AIIGTQSYVL FTLDKLIYKL IKHLQAVAAD EMDNKLQQLY AYEKSRKPEK FLDAVYYENA LVLLPDEDIY RIECEQSTPS KLSIQLLDYG
1201: HDKPDVTSIS MDPTFAAYLH NVFLSYQPNA KENPRIYLKR NKRKNGGDDE LCTTDEVKII NGLECKITCS SSKVSYVLDT EDVLHRAKRR KLLNQSGLPL
1301: AHDSVCSGSL IRQRRTQRYQ KLLTGQ

Arabidopsis Description

SNL4Paired amphipathic helix protein Sin3-like 4 [Source:UniProtKB/Swiss-Prot;Acc:O04539]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.