Factsheet for Bra024644.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 3
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY16235	Canola	mitochondrion	100.0	100.0
CDY14678	Canola	cytosol	94.05	91.33
AT1G27240.1	Thale cress	cytosol	28.57	51.61
AT1G24210.1	Thale cress	cytosol	22.02	47.74
Bra024645.1-P	Field mustard	cytosol, mitochondrion, nucleus	8.04	30.0
Bra003968.1-P	Field mustard	cytosol	13.69	29.68
Bra012419.1-P	Field mustard	cytosol	7.44	29.07
Bra007893.1-P	Field mustard	cytosol	5.06	21.25
Bra037065.1-P	Field mustard	nucleus	14.58	20.33
Bra037066.1-P	Field mustard	nucleus	16.37	19.78
VIT_17s0000g07540.t01	Wine grape	nucleus	9.82	17.74
Bra007894.1-P	Field mustard	nucleus	13.69	10.93
Bra027831.1-P	Field mustard	nucleus	15.48	6.97
Bra019933.1-P	Field mustard	nucleus	16.96	5.61
Bra006276.1-P	Field mustard	nucleus	20.24	5.05
Bra035418.1-P	Field mustard	nucleus	16.07	4.88
Bra040510.1-P	Field mustard	mitochondrion, nucleus	19.05	4.76
Bra023501.1-P	Field mustard	nucleus	18.75	4.72
Bra016241.1-P	Field mustard	nucleus	16.96	4.42
Bra017891.1-P	Field mustard	nucleus	12.8	4.39
Bra003967.1-P	Field mustard	nucleus	16.96	4.33
Bra008727.1-P	Field mustard	cytosol	2.08	1.77

Protein Annotations

Gene3D:1.20.1160.11	MapMan:35.1	EnsemblPlantsGene:Bra024644	EnsemblPlants:Bra024644.1	EnsemblPlants:Bra024644.1-P	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR003822	UniProt:M4E789	InterPro:PAH
InterPro:PAH_sf	PFAM:PF02671	PFscan:PS51477	SUPFAM:SSF47762	UniParc:UPI0002542193	SEG:seg

Description

AT1G27240 (E=2e-034) | paired amphipathic helix repeat-containing protein

Coordinates

chrA09:+:23856036..23857449

Molecular Weight (calculated)

39221.0 Da

IEP (calculated)

9.578

GRAVY (calculated)

-0.771

Length

336 amino acids

Sequence
(BLAST)

001: MGGGRVQPKN QMFSFAKQYI ARVKEALKDE PEKYQVFVDM LKYFTNHRRY DDEATILATV DDLLKDHPDL RLDFNNFLSP EAESIITPPE AKSIIPPTAE
101: SIIIPPEAER TIPPKAEETI TPEAERTIPD EAERTIITPD ANKQLSKYQT MVDRRVSREL TLDDDAHPYI ASVKKAFCDE PGKYKEFLQI LHAYSHLGKD
201: VPSTTARMRE LMKEHKKLFR GFRVFLPDHA KTTIILKVKS TIPPPEAEHH GTAQSNSKKR KRVEFDDTSF VDKLKIRFRS LDTHVVESFR KTMKKYEEGK
301: KSKRKVYNKV LNLLYYHEDL TEDFTRYFKR QKILKE

Best Arabidopsis Sequence Match ( AT1G27240.1 )
(BLAST)

001: MVERRVQVEP TLSDAHSYIT AVKEAFHDEP TKYEEFIKLM NDIRDHGVDK ASGIAKLTEL IKGHPRLLRG LSFFFPQVNR DIHHEAKRTI ILKDKATIPP
101: EAAYRGAKST YTKIKQIEPD WENFMNMLKT RFRSLDTHVV ESFLKIMIMY DEGKKSEKEV QEEVVDLLYY HEDLIDKFFR LFNMRK

Arabidopsis Description

F17L21.3 [Source:UniProtKB/TrEMBL;Acc:O04571]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.