Factsheet for Bra024645.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus, cytosol

Predictor Summary:

nucleus 4
cytosol 1
plastid 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY16234	Canola	cytosol, mitochondrion, nucleus	100.0	100.0
Bra012419.1-P	Field mustard	cytosol	66.67	69.77
AT1G27220.1	Thale cress	nucleus	75.56	36.96
KRG99215	Soybean	cytosol	47.78	31.39
Bra003968.1-P	Field mustard	cytosol	35.56	20.65
Bra007893.1-P	Field mustard	cytosol	14.44	16.25
Bra037065.1-P	Field mustard	nucleus	42.22	15.77
Bra037066.1-P	Field mustard	nucleus	42.22	13.67
Bra024644.1-P	Field mustard	mitochondrion	30.0	8.04
KRH45778	Soybean	cytosol	48.89	6.91
Bra007894.1-P	Field mustard	nucleus	28.89	6.18
Bra027831.1-P	Field mustard	nucleus	41.11	4.96
Bra017891.1-P	Field mustard	nucleus	44.44	4.08
Bra019933.1-P	Field mustard	nucleus	42.22	3.74
Bra016241.1-P	Field mustard	nucleus	52.22	3.65
Bra035418.1-P	Field mustard	nucleus	43.33	3.52
Bra003967.1-P	Field mustard	nucleus	51.11	3.5
Bra023501.1-P	Field mustard	nucleus	48.89	3.29
Bra040510.1-P	Field mustard	mitochondrion, nucleus	47.78	3.2
Bra006276.1-P	Field mustard	nucleus	47.78	3.19
Bra008727.1-P	Field mustard	cytosol	1.11	0.25

Protein Annotations

Gene3D:1.20.1160.11	MapMan:35.1	EnsemblPlantsGene:Bra024645	EnsemblPlants:Bra024645.1	EnsemblPlants:Bra024645.1-P	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR003822	UniProt:M4E790	InterPro:PAH
InterPro:PAH_sf	PFAM:PF02671	PFscan:PS51477	PANTHER:PTHR12346	PANTHER:PTHR12346:SF0	SUPFAM:SSF47762
UniParc:UPI0002542192	:	:	:	:	:

Description

AT1G27220 (E=4e-035) | paired amphipathic helix repeat-containing protein

Coordinates

chrA09:+:23850166..23850527

Molecular Weight (calculated)

10424.2 Da

IEP (calculated)

5.119

GRAVY (calculated)

-0.682

Length

90 amino acids

Sequence
(BLAST)

1: MAGEGSKQNA TRDDAYAYLR TVKNQFQNDR EKYNDFLAIM NNFNAGRIDR NGCIEEVKEL FKGHRDLISG FNVFLPVSLE IADWYNLEGR

Best Arabidopsis Sequence Match ( AT1G27220.1 )
(BLAST)

001: MAGEGSKPKA TVDDAYAYIR TVKSTFHNDP DKYDDFMAIM KNFKARKIDR NTCIEEVKEL LKGHRDLISG FNAFLPKCLE IADWYNIEVL EAELQALLMA
101: MQHTWSKGYR KIIFEGDNRT VESLLNGNTR NFELHNLIIE IQHWRKKFSN AIIKWSFRST NKAADRLAKG ELENNVTFVS HSTR

Arabidopsis Description

Paired amphipathic helix repeat-containing protein [Source:UniProtKB/TrEMBL;Acc:F4HR59]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.