Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra024644.1-P | Field mustard | mitochondrion | 91.33 | 94.05 |
| CDY16235 | Canola | mitochondrion | 91.33 | 94.05 |
| AT1G27240.1 | Thale cress | cytosol | 27.17 | 50.54 |
| AT1G24210.1 | Thale cress | cytosol | 21.1 | 47.1 |
| CDY67989 | Canola | nucleus | 14.45 | 32.05 |
| CDY23529 | Canola | cytosol | 13.29 | 29.11 |
| CDY48381 | Canola | cytosol | 13.01 | 29.03 |
| CDY23528 | Canola | cytosol | 13.01 | 29.03 |
| CDY16234 | Canola | cytosol, mitochondrion, nucleus | 7.51 | 28.89 |
| CDY14679 | Canola | cytosol, mitochondrion, nucleus | 7.51 | 28.89 |
| CDY48380 | Canola | cytosol | 12.72 | 27.85 |
| CDY66875 | Canola | mitochondrion | 12.72 | 27.5 |
| CDY42984 | Canola | cytosol, mitochondrion, nucleus | 12.72 | 27.5 |
| CDY42981 | Canola | mitochondrion | 12.72 | 27.5 |
| CDY28457 | Canola | cytoskeleton, cytosol, nucleus | 6.65 | 27.38 |
| CDY03764 | Canola | cytosol | 12.72 | 27.16 |
| CDY42979 | Canola | cytosol, mitochondrion, nucleus | 11.27 | 26.9 |
| CDY40291 | Canola | cytoskeleton, cytosol, nucleus | 6.36 | 25.58 |
| CDY06480 | Canola | cytosol | 15.03 | 22.03 |
| CDY42983 | Canola | nucleus | 9.83 | 20.99 |
| CDY08302 | Canola | cytosol | 15.32 | 20.7 |
| CDY08301 | Canola | cytosol | 15.32 | 19.06 |
| VIT_17s0000g07540.t01 | Wine grape | nucleus | 9.25 | 17.2 |
| CDY42986 | Canola | cytosol | 8.96 | 14.83 |
| CDY03763 | Canola | cytosol | 12.14 | 14.74 |
| CDY31594 | Canola | nucleus | 15.32 | 13.35 |
| CDY55066 | Canola | cytosol | 15.32 | 13.32 |
| CDY64433 | Canola | cytosol | 9.25 | 12.08 |
| CDY45153 | Canola | nucleus | 16.18 | 5.79 |
| CDY37976 | Canola | nucleus | 15.9 | 5.57 |
| CDX93425 | Canola | nucleus | 15.9 | 5.41 |
| CDY30912 | Canola | nucleus | 15.9 | 5.24 |
| CDX78604 | Canola | nucleus | 19.08 | 4.89 |
| CDX70587 | Canola | nucleus | 19.08 | 4.87 |
| CDX91007 | Canola | nucleus | 18.5 | 4.84 |
| CDY24499 | Canola | nucleus | 15.03 | 4.69 |
| CDY28683 | Canola | mitochondrion, nucleus | 18.21 | 4.68 |
| CDX85568 | Canola | nucleus | 17.92 | 4.64 |
| CDY33612 | Canola | nucleus | 15.32 | 4.6 |
| CDY11625 | Canola | nucleus | 16.18 | 4.34 |
| CDX68358 | Canola | nucleus | 15.9 | 4.28 |
| CDY38781 | Canola | nucleus | 15.9 | 4.27 |
| CDY23527 | Canola | nucleus | 15.9 | 4.25 |
| CDY71516 | Canola | cytosol, mitochondrion, nucleus | 0.87 | 1.15 |
| CDY28682 | Canola | nucleus | 0.58 | 0.16 |
| CDY55065 | Canola | nucleus | 0.0 | 0.0 |
| CDY64434 | Canola | nucleus | 0.0 | 0.0 |
| CDY31595 | Canola | nucleus | 0.0 | 0.0 |
| CDY70453 | Canola | cytosol | 0.0 | 0.0 |
Protein Annotations
| Gene3D:1.20.1160.11 | MapMan:35.1 | GO:A0A078FQT7 | UniProt:A0A078FQT7 | EnsemblPlants:CDY14678 | ProteinID:CDY14678 |
| ProteinID:CDY14678.1 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00084469001 |
| InterPro:IPR003822 | InterPro:PAH | InterPro:PAH_sf | PFAM:PF02671 | PFscan:PS51477 | PANTHER:PTHR12346 |
| PANTHER:PTHR12346:SF0 | SUPFAM:SSF47762 | UniParc:UPI0004EDDC2B | SEG:seg | : | : |
Description
BnaC05g19350DBnaC05g19350D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FQT7]
Coordinates
chrLK032046:-:169434..171605
Molecular Weight (calculated)
40453.6 Da
IEP (calculated)
9.892
GRAVY (calculated)
-0.766
Length
346 amino acids
Sequence
(BLAST)
(BLAST)
001: MGGGRVQPKN QMFSYAKQYI DNVKEALKDE PEKYQVFVDM LKYFTNHRRY DEATILATVD ELLKDHPNLR LDFNNFLSPE AESIIIPPEA KSIIPPTAER
101: TITPEAKSII PPTAESIITQ TIIPKAEKTI TPEAERTIPN EAERTIITPD ANKQLSKYQT MVDRRVSREL TLDDDAHPYI ASVKKAFCDE PGKYKEFLQI
201: LHAYSHLGKD VPSTTARMRE LMKEHKKLFR RFRVFLPDHA KTTIILKVKS TIPPPQAEHH GTAQSNSKKR KRVEFDDTSF VDKLKLRFRS LDTHVVESFR
301: KTMKKYEEGK KSKRKVYNKV LNLLYYHEDL TEDFTRYFKR QKYQLE
101: TITPEAKSII PPTAESIITQ TIIPKAEKTI TPEAERTIPN EAERTIITPD ANKQLSKYQT MVDRRVSREL TLDDDAHPYI ASVKKAFCDE PGKYKEFLQI
201: LHAYSHLGKD VPSTTARMRE LMKEHKKLFR RFRVFLPDHA KTTIILKVKS TIPPPQAEHH GTAQSNSKKR KRVEFDDTSF VDKLKLRFRS LDTHVVESFR
301: KTMKKYEEGK KSKRKVYNKV LNLLYYHEDL TEDFTRYFKR QKYQLE
001: MVERRVQVEP TLSDAHSYIT AVKEAFHDEP TKYEEFIKLM NDIRDHGVDK ASGIAKLTEL IKGHPRLLRG LSFFFPQVNR DIHHEAKRTI ILKDKATIPP
101: EAAYRGAKST YTKIKQIEPD WENFMNMLKT RFRSLDTHVV ESFLKIMIMY DEGKKSEKEV QEEVVDLLYY HEDLIDKFFR LFNMRK
101: EAAYRGAKST YTKIKQIEPD WENFMNMLKT RFRSLDTHVV ESFLKIMIMY DEGKKSEKEV QEEVVDLLYY HEDLIDKFFR LFNMRK
Arabidopsis Description
F17L21.3 [Source:UniProtKB/TrEMBL;Acc:O04571]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.