Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra035418.1-P | Field mustard | nucleus | 98.83 | 99.01 |
| CDY33612 | Canola | nucleus | 96.84 | 93.15 |
| CDY55065 | Canola | nucleus | 55.64 | 88.27 |
| CDY31595 | Canola | nucleus | 54.46 | 87.28 |
| CDY31594 | Canola | nucleus | 31.2 | 87.15 |
| CDY55066 | Canola | cytosol | 31.02 | 86.43 |
| CDY30912 | Canola | nucleus | 75.92 | 80.19 |
| CDY45153 | Canola | nucleus | 67.0 | 76.76 |
| AT1G59890.2 | Thale cress | nucleus | 78.9 | 74.98 |
| CDY37976 | Canola | nucleus | 57.44 | 64.47 |
| CDX93425 | Canola | nucleus | 58.79 | 64.17 |
| CDY23529 | Canola | cytosol | 8.3 | 58.23 |
| CDY48380 | Canola | cytosol | 8.3 | 58.23 |
| CDY64434 | Canola | nucleus | 3.07 | 54.84 |
| CDY48381 | Canola | cytosol | 6.94 | 49.68 |
| CDY23528 | Canola | cytosol | 6.94 | 49.68 |
| CDY06480 | Canola | cytosol | 10.01 | 47.03 |
| CDY67989 | Canola | nucleus | 6.4 | 45.51 |
| CDY08302 | Canola | cytosol | 10.37 | 44.92 |
| CDY71516 | Canola | cytosol, mitochondrion, nucleus | 10.46 | 44.62 |
| KRG99216 | Soybean | nucleus | 54.37 | 43.66 |
| CDY70453 | Canola | cytosol | 13.16 | 43.58 |
| KRH45772 | Soybean | nucleus | 54.55 | 43.37 |
| CDY16234 | Canola | cytosol, mitochondrion, nucleus | 3.52 | 43.33 |
| CDY14679 | Canola | cytosol, mitochondrion, nucleus | 3.52 | 43.33 |
| CDY08301 | Canola | cytosol | 10.82 | 43.17 |
| CDY40291 | Canola | cytoskeleton, cytosol, nucleus | 3.34 | 43.02 |
| CDX68358 | Canola | nucleus | 49.5 | 42.76 |
| CDY11625 | Canola | nucleus | 49.23 | 42.33 |
| CDY23527 | Canola | nucleus | 49.32 | 42.27 |
| CDY38781 | Canola | nucleus | 48.69 | 41.89 |
| CDY28457 | Canola | cytoskeleton, cytosol, nucleus | 3.16 | 41.67 |
| CDY42981 | Canola | mitochondrion | 5.86 | 40.62 |
| CDY66875 | Canola | mitochondrion | 5.77 | 40.0 |
| PGSC0003DMT400058222 | Potato | nucleus | 49.23 | 40.0 |
| Solyc05g006540.2.1 | Tomato | nucleus | 48.96 | 39.93 |
| CDY42984 | Canola | cytosol, mitochondrion, nucleus | 5.68 | 39.38 |
| CDY03764 | Canola | cytosol | 5.68 | 38.89 |
| CDX91007 | Canola | nucleus | 46.17 | 38.7 |
| CDY42979 | Canola | cytosol, mitochondrion, nucleus | 5.05 | 38.62 |
| CDX70587 | Canola | nucleus | 47.16 | 38.6 |
| CDX78604 | Canola | nucleus | 46.98 | 38.59 |
| CDX85568 | Canola | nucleus | 45.99 | 38.17 |
| CDY28683 | Canola | mitochondrion, nucleus | 44.73 | 36.85 |
| CDY42983 | Canola | nucleus | 4.96 | 33.95 |
| CDY28682 | Canola | nucleus | 36.34 | 32.53 |
| KRH45776 | Soybean | nucleus | 26.51 | 31.89 |
| CDY64433 | Canola | cytosol | 6.49 | 27.17 |
| CDY03763 | Canola | cytosol | 6.31 | 24.56 |
| CDY42986 | Canola | cytosol | 4.42 | 23.45 |
| CDY16235 | Canola | mitochondrion | 4.87 | 16.07 |
| CDY14678 | Canola | cytosol | 4.69 | 15.03 |
Protein Annotations
| Gene3D:1.20.1160.11 | MapMan:12.3.2.4.2 | GO:A0A078GGN8 | UniProt:A0A078GGN8 | EnsemblPlants:CDY24499 | ProteinID:CDY24499 |
| ProteinID:CDY24499.1 | ncoils:Coil | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| EnsemblPlantsGene:GSBRNA2T00026797001 | InterPro:HDAC_interact_dom | InterPro:IPR003822 | InterPro:PAH | InterPro:PAH_sf | PFAM:PF02671 |
| PFAM:PF08295 | PFAM:PF16879 | PFscan:PS51477 | PANTHER:PTHR12346 | PANTHER:PTHR12346:SF21 | SMART:SM00761 |
| SUPFAM:SSF47762 | InterPro:Sin3_C | UniParc:UPI0004EE2A0E | SEG:seg | : | : |
Description
BnaA01g22030DBnaA01g22030D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GGN8]
Coordinates
chrLK032160:+:62579..68227
Molecular Weight (calculated)
125367.0 Da
IEP (calculated)
6.159
GRAVY (calculated)
-0.666
Length
1109 amino acids
Sequence
(BLAST)
(BLAST)
0001: MKRVREEVYV EAQTRGQTNG SRPLTIGGGG GGNMGGLTTN DALSYLKAVK DMFQDKKDKY DTFLALMKDF KAQRVNTDGV IASVKELFKG YDDLLLGFNT
0101: FLPKGYRITL PEKKPVAFGE AIDFVNKIKA RFGDDNRAYK RFLDILNMYR KEGKSISSVY QEVTLLFQGH EDLLAEFVNF LPNNSGSGSG SNAVPHDRSS
0201: SLHPMHFNKK IKIGSRLDEY TAHSDQREDG DENLVASGNS RGKSLDQGQW RQVEDNEDVV FGQKNNMVKG INELDLTDCV QCTPSYRHLP DDYPIPISSY
0301: RNSLGEKVLN DHWVSVTSGS EDYSFKHMRK NQYEESLFRC EDDRFELDML LESVNAAIKR VETLLEKINN NTISTPICIK EHLSVLNLRC IERLYGDYGL
0401: DVMEILKKNS HIALPVILTR LKQKQEEWAR CRFDFRKVWA DVYAKNHHKS LDHRSFYFKQ QDSKNLSTKG LVAEIKDISD SKHKEDPLHA IAVGTKPSFT
0501: PDLDFSYSDT QIHADLYQLI KYYCEEICAT EQSDKVMKLW VAFLEPMFGV PSRSQSGEAM LDVAKSKDNQ EQYDACEAVK ESTCDVSLVS NLKLITPPTT
0601: PNKENPTVQG SSVAQETIQQ DKLLVGAAMN IKDTQPVAPP RKDLLMEGVE NRTDVIMGDQ KVEREEGELS PTESFEQDNH EVYRDNGVES LQKLPDNVGS
0701: NKEQEHKGGA VCTEAKAKSS TLPKDDENKI THASGSKCGG QVSSDEEHKG AMNCDRLGSV IESENEAVGM INANETEDGS LTFSERYLQP VKPLAKHVPG
0801: ALQVSESNSP NDSRVFYGND SFYVLFRLHQ MLYERIQSAK IHSERKWKAP DPDNTSPDSY TRFMDALYNL LDGSSDNTKF EDECRALIGA QSYVLFTLDK
0901: LVQKFVKHLH SVAADETDTK LLQLYTYENY RKPGRFFDIV YHENARALLH EQNIYRIGYS SAQTRLAIQL MNNGNDHQPE VTAVTVEPGF ANYLQNDFLS
1001: LVPDEERPGL YLKRNMAKMS GPDESSGMLR AMEGLKIINE VECKMACSSS KVKYEPNTSD LLYRVKQKKP KVNPNGLDND KTPGSSETSR KRKISRFHMC
1101: LNRRLASLP
0101: FLPKGYRITL PEKKPVAFGE AIDFVNKIKA RFGDDNRAYK RFLDILNMYR KEGKSISSVY QEVTLLFQGH EDLLAEFVNF LPNNSGSGSG SNAVPHDRSS
0201: SLHPMHFNKK IKIGSRLDEY TAHSDQREDG DENLVASGNS RGKSLDQGQW RQVEDNEDVV FGQKNNMVKG INELDLTDCV QCTPSYRHLP DDYPIPISSY
0301: RNSLGEKVLN DHWVSVTSGS EDYSFKHMRK NQYEESLFRC EDDRFELDML LESVNAAIKR VETLLEKINN NTISTPICIK EHLSVLNLRC IERLYGDYGL
0401: DVMEILKKNS HIALPVILTR LKQKQEEWAR CRFDFRKVWA DVYAKNHHKS LDHRSFYFKQ QDSKNLSTKG LVAEIKDISD SKHKEDPLHA IAVGTKPSFT
0501: PDLDFSYSDT QIHADLYQLI KYYCEEICAT EQSDKVMKLW VAFLEPMFGV PSRSQSGEAM LDVAKSKDNQ EQYDACEAVK ESTCDVSLVS NLKLITPPTT
0601: PNKENPTVQG SSVAQETIQQ DKLLVGAAMN IKDTQPVAPP RKDLLMEGVE NRTDVIMGDQ KVEREEGELS PTESFEQDNH EVYRDNGVES LQKLPDNVGS
0701: NKEQEHKGGA VCTEAKAKSS TLPKDDENKI THASGSKCGG QVSSDEEHKG AMNCDRLGSV IESENEAVGM INANETEDGS LTFSERYLQP VKPLAKHVPG
0801: ALQVSESNSP NDSRVFYGND SFYVLFRLHQ MLYERIQSAK IHSERKWKAP DPDNTSPDSY TRFMDALYNL LDGSSDNTKF EDECRALIGA QSYVLFTLDK
0901: LVQKFVKHLH SVAADETDTK LLQLYTYENY RKPGRFFDIV YHENARALLH EQNIYRIGYS SAQTRLAIQL MNNGNDHQPE VTAVTVEPGF ANYLQNDFLS
1001: LVPDEERPGL YLKRNMAKMS GPDESSGMLR AMEGLKIINE VECKMACSSS KVKYEPNTSD LLYRVKQKKP KVNPNGLDND KTPGSSETSR KRKISRFHMC
1101: LNRRLASLP
0001: MKRVREEVYV EPQMRGPTVS SRGETNGRPS TISGGGTTGG LTTVDALTYL KAVKDMFQDN KEKYETFLGV MKDFKAQRVD TNGVIARVKD LFKGYDDLLL
0101: GFNTFLPKGY KITLQPEDEK PKKPVDFQVA IEFVNRIKAR FGGDDRAYKK FLDILNMYRK ETKSINEVYQ EVTLLFQDHE DLLGEFVHFL PDFRGSVSVN
0201: DPLFQRNTIP RDRNSTFPGM HPKHFEKKIK RSRHDEYTEL SDQREDGDEN LVAYSAGNSL GKSLANQGQW PGYPKVEDTE GIQIYESNGG HERDPDIGSQ
0301: KNLLSTNHMA KAINELDLTD CAQCTPSYRR LPDDYPIQIP SYRNSLGEKV LNDHWVSVTS GSEDYSFKHM RKNQYEESLF RCEDDRFELD MLLESVSAAI
0401: KRVESLLEKI NNNTISIETP ICIREHLSEL NLRCIERLYG DYGLDVMDFL KKNSHIALPV ILTRLKQKQE EWARCRADFR KVWAEVYAKN HHKSLDHRSF
0501: YFKQQDSKNL STKGLVAEIK DISERKHKED LLRAIAVGTK PSFTPDVEFI YTDTKVHTDL YKLIKYYCEE ICATEQSDKV MKLWVTFLEP MFGVPSRSET
0601: IETMKDVAKI EDNQEHHDAS EAVKENTCDG SMASNLKPLT PPKMPNKENP MIQGSSFAQD LPVNTGESIQ QDKLHDVAAI TNEDSQPSKL VSTRNDLIME
0701: GVENRSRVSD VSMGGHKVER EEGELSPTES CEQENFEVYK ENGLEPVQKL PDNEISNTDR EPKEGACGTE AVTRSNALPE DDDNKITQKL SEGDENASKF
0801: IVSASKFGGQ VSSDEEHKGA ESENEAGGMV NSNEGEDGSF FTFSERYLQP VKPLAKHVPG TLQASECDTR NDSRVFYGND SLYVLFRLHQ MLYERIQSAK
0901: IHSERKWKAP DSTSTDSYTR FMEALYNLLD GSSDNTKFED ECRAIIGAQS YVLFTLDKLV QKFVKHLHAV AADETDTKLL QLYAYENYRK PGRFFDIVYH
1001: ENARALLHDQ NIYRIEYSSA QTRLGIQLMN SWNDQPEVTA VTVEPGFANY LQNDFLSFVS DEEKPGLFLK RNKAKLSGPG EESLGMSRAL EGLNIINEVE
1101: CKIACSSFKV KYEPHTADLL YRRKQKKATL NPTGPENVKT SDSSELSRKK RISRFHMSLN RRLVALP
0101: GFNTFLPKGY KITLQPEDEK PKKPVDFQVA IEFVNRIKAR FGGDDRAYKK FLDILNMYRK ETKSINEVYQ EVTLLFQDHE DLLGEFVHFL PDFRGSVSVN
0201: DPLFQRNTIP RDRNSTFPGM HPKHFEKKIK RSRHDEYTEL SDQREDGDEN LVAYSAGNSL GKSLANQGQW PGYPKVEDTE GIQIYESNGG HERDPDIGSQ
0301: KNLLSTNHMA KAINELDLTD CAQCTPSYRR LPDDYPIQIP SYRNSLGEKV LNDHWVSVTS GSEDYSFKHM RKNQYEESLF RCEDDRFELD MLLESVSAAI
0401: KRVESLLEKI NNNTISIETP ICIREHLSEL NLRCIERLYG DYGLDVMDFL KKNSHIALPV ILTRLKQKQE EWARCRADFR KVWAEVYAKN HHKSLDHRSF
0501: YFKQQDSKNL STKGLVAEIK DISERKHKED LLRAIAVGTK PSFTPDVEFI YTDTKVHTDL YKLIKYYCEE ICATEQSDKV MKLWVTFLEP MFGVPSRSET
0601: IETMKDVAKI EDNQEHHDAS EAVKENTCDG SMASNLKPLT PPKMPNKENP MIQGSSFAQD LPVNTGESIQ QDKLHDVAAI TNEDSQPSKL VSTRNDLIME
0701: GVENRSRVSD VSMGGHKVER EEGELSPTES CEQENFEVYK ENGLEPVQKL PDNEISNTDR EPKEGACGTE AVTRSNALPE DDDNKITQKL SEGDENASKF
0801: IVSASKFGGQ VSSDEEHKGA ESENEAGGMV NSNEGEDGSF FTFSERYLQP VKPLAKHVPG TLQASECDTR NDSRVFYGND SLYVLFRLHQ MLYERIQSAK
0901: IHSERKWKAP DSTSTDSYTR FMEALYNLLD GSSDNTKFED ECRAIIGAQS YVLFTLDKLV QKFVKHLHAV AADETDTKLL QLYAYENYRK PGRFFDIVYH
1001: ENARALLHDQ NIYRIEYSSA QTRLGIQLMN SWNDQPEVTA VTVEPGFANY LQNDFLSFVS DEEKPGLFLK RNKAKLSGPG EESLGMSRAL EGLNIINEVE
1101: CKIACSSFKV KYEPHTADLL YRRKQKKATL NPTGPENVKT SDSSELSRKK RISRFHMSLN RRLVALP
Arabidopsis Description
SNL5SIN3-like 5 [Source:UniProtKB/TrEMBL;Acc:F4IEM8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.