Subcellular Localization
min:
: max
Winner_takes_all: cytoskeleton, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- mitochondrion 1
- cytoskeleton 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra012419.1-P | Field mustard | cytosol | 95.24 | 93.02 |
| CDY40291 | Canola | cytoskeleton, cytosol, nucleus | 94.05 | 91.86 |
| CDY14679 | Canola | cytosol, mitochondrion, nucleus | 70.24 | 65.56 |
| CDY16234 | Canola | cytosol, mitochondrion, nucleus | 69.05 | 64.44 |
| AT1G27250.1 | Thale cress | nucleus | 66.67 | 40.88 |
| KRG99215 | Soybean | cytosol | 46.43 | 28.47 |
| CDY23528 | Canola | cytosol | 38.1 | 20.65 |
| CDY48381 | Canola | cytosol | 38.1 | 20.65 |
| CDY23529 | Canola | cytosol | 36.9 | 19.62 |
| CDY48380 | Canola | cytosol | 36.9 | 19.62 |
| CDY67989 | Canola | nucleus | 35.71 | 19.23 |
| CDY42979 | Canola | cytosol, mitochondrion, nucleus | 28.57 | 16.55 |
| CDY42981 | Canola | mitochondrion | 29.76 | 15.62 |
| CDY03764 | Canola | cytosol | 29.76 | 15.43 |
| CDY42984 | Canola | cytosol, mitochondrion, nucleus | 28.57 | 15.0 |
| CDY66875 | Canola | mitochondrion | 28.57 | 15.0 |
| CDY42983 | Canola | nucleus | 28.57 | 14.81 |
| CDY06480 | Canola | cytosol | 40.48 | 14.41 |
| CDY08302 | Canola | cytosol | 39.29 | 12.89 |
| CDY08301 | Canola | cytosol | 39.29 | 11.87 |
| CDY64433 | Canola | cytosol | 33.33 | 10.57 |
| CDY31594 | Canola | nucleus | 41.67 | 8.82 |
| CDY55066 | Canola | cytosol | 40.48 | 8.54 |
| CDY03763 | Canola | cytosol | 28.57 | 8.42 |
| CDY16235 | Canola | mitochondrion | 28.57 | 7.14 |
| CDY14678 | Canola | cytosol | 27.38 | 6.65 |
| KRH45778 | Soybean | cytosol | 46.43 | 6.12 |
| CDY42986 | Canola | cytosol | 14.29 | 5.74 |
| CDY45153 | Canola | nucleus | 41.67 | 3.62 |
| CDY37976 | Canola | nucleus | 39.29 | 3.34 |
| CDY30912 | Canola | nucleus | 41.67 | 3.33 |
| CDX93425 | Canola | nucleus | 39.29 | 3.25 |
| CDX68358 | Canola | nucleus | 48.81 | 3.19 |
| CDY38781 | Canola | nucleus | 48.81 | 3.18 |
| CDY11625 | Canola | nucleus | 48.81 | 3.18 |
| CDY23527 | Canola | nucleus | 48.81 | 3.17 |
| CDY24499 | Canola | nucleus | 41.67 | 3.16 |
| CDY33612 | Canola | nucleus | 41.67 | 3.04 |
| CDX78604 | Canola | nucleus | 46.43 | 2.89 |
| CDX70587 | Canola | nucleus | 45.24 | 2.8 |
| CDX85568 | Canola | nucleus | 44.05 | 2.77 |
| CDY28683 | Canola | mitochondrion, nucleus | 44.05 | 2.75 |
| CDX91007 | Canola | nucleus | 41.67 | 2.65 |
| CDY71516 | Canola | cytosol, mitochondrion, nucleus | 1.19 | 0.38 |
| CDY28682 | Canola | nucleus | 1.19 | 0.08 |
| CDY31595 | Canola | nucleus | 0.0 | 0.0 |
| CDY55065 | Canola | nucleus | 0.0 | 0.0 |
| CDY64434 | Canola | nucleus | 0.0 | 0.0 |
| CDY70453 | Canola | cytosol | 0.0 | 0.0 |
Protein Annotations
| Gene3D:1.20.1160.11 | MapMan:35.1 | GO:A0A078GTL6 | UniProt:A0A078GTL6 | EnsemblPlants:CDY28457 | ProteinID:CDY28457 |
| ProteinID:CDY28457.1 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00040340001 |
| InterPro:IPR003822 | InterPro:PAH | InterPro:PAH_sf | PFAM:PF02671 | PFscan:PS51477 | PANTHER:PTHR12346 |
| PANTHER:PTHR12346:SF0 | SUPFAM:SSF47762 | UniParc:UPI0004EDE51F | : | : | : |
Description
BnaC07g12850DBnaC07g12850D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GTL6]
Coordinates
chrLK032220:+:356147..356505
Molecular Weight (calculated)
9885.7 Da
IEP (calculated)
6.087
GRAVY (calculated)
-0.699
Length
84 amino acids
Sequence
(BLAST)
(BLAST)
1: MDGEGSKPKA NIDDAYAYLR TVQDKFHNDH DKYDKFLAIM NNFEARRIDR AHCILEVREL FKGHQDLISG FNKFLPEWLE ISPT
001: MAGEGSKPKA TVDDAYAYIR TVKSTFHNDP DKYDDFMAIM KNFKARKIDR NTCIEEVKEL LKGHRDLISG FNAFLPKCLE IADWYNIEVL EAELQALLMA
101: MQHTWSKGYR KIIFEGDNRT VESLLNGNTR NFELHNLIIE IQHWRKKFSN AIIKWSFRST NKAADRLAKG ELENNVTFVS HSTR
101: MQHTWSKGYR KIIFEGDNRT VESLLNGNTR NFELHNLIIE IQHWRKKFSN AIIKWSFRST NKAADRLAKG ELENNVTFVS HSTR
Arabidopsis Description
Paired amphipathic helix repeat-containing protein [Source:UniProtKB/TrEMBL;Acc:F4HR59]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.