Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX93425 | Canola | nucleus | 93.52 | 90.94 |
| Bra019933.1-P | Field mustard | nucleus | 93.42 | 90.85 |
| AT1G10450.3 | Thale cress | endoplasmic reticulum, plastid | 73.68 | 62.06 |
| CDY30912 | Canola | nucleus | 63.16 | 59.43 |
| CDY55066 | Canola | cytosol | 23.48 | 58.29 |
| CDY31594 | Canola | nucleus | 23.38 | 58.19 |
| CDY24499 | Canola | nucleus | 64.47 | 57.44 |
| CDY23529 | Canola | cytosol | 9.11 | 56.96 |
| CDY48380 | Canola | cytosol | 9.01 | 56.33 |
| CDY33612 | Canola | nucleus | 64.98 | 55.68 |
| CDY55065 | Canola | nucleus | 38.97 | 55.08 |
| CDY45153 | Canola | nucleus | 53.95 | 55.06 |
| CDY31595 | Canola | nucleus | 38.06 | 54.34 |
| CDY06480 | Canola | cytosol | 12.85 | 53.81 |
| CDY08302 | Canola | cytosol | 13.26 | 51.17 |
| CDY64434 | Canola | nucleus | 3.14 | 50.0 |
| CDY08301 | Canola | cytosol | 13.77 | 48.92 |
| CDY23528 | Canola | cytosol | 7.39 | 47.1 |
| CDY48381 | Canola | cytosol | 7.39 | 47.1 |
| CDY67989 | Canola | nucleus | 6.98 | 44.23 |
| CDY14679 | Canola | cytosol, mitochondrion, nucleus | 3.85 | 42.22 |
| CDY16234 | Canola | cytosol, mitochondrion, nucleus | 3.85 | 42.22 |
| CDY71516 | Canola | cytosol, mitochondrion, nucleus | 10.83 | 41.15 |
| CDY70453 | Canola | cytosol | 13.66 | 40.3 |
| CDY42981 | Canola | mitochondrion | 6.48 | 40.0 |
| CDY40291 | Canola | cytoskeleton, cytosol, nucleus | 3.44 | 39.53 |
| CDY66875 | Canola | mitochondrion | 6.38 | 39.38 |
| CDY28457 | Canola | cytoskeleton, cytosol, nucleus | 3.34 | 39.29 |
| CDY42984 | Canola | cytosol, mitochondrion, nucleus | 6.28 | 38.75 |
| KRG99216 | Soybean | nucleus | 53.85 | 38.52 |
| CDX68358 | Canola | nucleus | 50.0 | 38.47 |
| CDY03764 | Canola | cytosol | 6.28 | 38.27 |
| CDY11625 | Canola | nucleus | 49.9 | 38.22 |
| CDY23527 | Canola | nucleus | 50.0 | 38.18 |
| KRH45772 | Soybean | nucleus | 53.64 | 37.99 |
| CDY38781 | Canola | nucleus | 49.49 | 37.94 |
| CDY42979 | Canola | cytosol, mitochondrion, nucleus | 5.47 | 37.24 |
| Solyc05g006540.2.1 | Tomato | nucleus | 49.9 | 36.25 |
| PGSC0003DMT400058222 | Potato | nucleus | 49.9 | 36.12 |
| CDX78604 | Canola | nucleus | 47.27 | 34.59 |
| CDX70587 | Canola | nucleus | 47.37 | 34.54 |
| CDX91007 | Canola | nucleus | 45.95 | 34.32 |
| CDY28683 | Canola | mitochondrion, nucleus | 46.56 | 34.18 |
| CDX85568 | Canola | nucleus | 46.05 | 34.06 |
| CDY42983 | Canola | nucleus | 5.06 | 30.86 |
| CDY28682 | Canola | nucleus | 36.94 | 29.46 |
| KRH45776 | Soybean | nucleus | 27.23 | 29.18 |
| CDY64433 | Canola | cytosol | 6.78 | 25.28 |
| CDY03763 | Canola | cytosol | 6.78 | 23.51 |
| CDY42986 | Canola | cytosol | 4.96 | 23.45 |
| CDY16235 | Canola | mitochondrion | 5.77 | 16.96 |
| CDY14678 | Canola | cytosol | 5.57 | 15.9 |
Protein Annotations
| Gene3D:1.20.1160.11 | MapMan:12.3.2.4.2 | GO:A0A078HJY2 | UniProt:A0A078HJY2 | EnsemblPlants:CDY37976 | ProteinID:CDY37976 |
| ProteinID:CDY37976.1 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00065020001 |
| InterPro:HDAC_interact_dom | InterPro:IPR003822 | InterPro:PAH | InterPro:PAH_sf | PFAM:PF02671 | PFAM:PF08295 |
| PFAM:PF16879 | PFscan:PS51477 | PANTHER:PTHR12346 | PANTHER:PTHR12346:SF21 | SMART:SM00761 | SUPFAM:SSF47762 |
| InterPro:Sin3_C | UniParc:UPI0004EE56E9 | SEG:seg | : | : | : |
Description
BnaC05g07980DBnaC05g07980D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HJY2]
Coordinates
chrLK032413:-:256221..261336
Molecular Weight (calculated)
112709.0 Da
IEP (calculated)
6.642
GRAVY (calculated)
-0.693
Length
988 amino acids
Sequence
(BLAST)
(BLAST)
001: MKRERETKNN NRGLTTSDAL HYLKTVRNIF HDNVGKYETF LEVMRDFKAQ RVDTAGVIER IKDLFKGYND LLLGFNTFLP KDHTITLSPE EEKPKTKVDY
101: NDAISFVTKI KARFGGDEDA YKSFLDILNL YRKDKKSITE VYKEVTLLFK GHEDLLVEFV NFLPSCSEST STKNEVPLQK RIKRERKLEY ESEHSDQRED
201: GDENLVACPA GNSLGNSLVK KEGQRGYLKA EDNGGIRDHE NSERDTDRTD KSAAAGSNDT ENQKSPPSAS KYVGVPINEL DLSECVQCTP SYRLLPKDYP
301: VEIPRYRNAL GKKILNDHLV SVTSGSEDYS FSHMRKNQYE ESLFRCEDDR YEMDMLLGSV SSAIKHVEIL LEKINNNTIS TDTICIEKHL SPMNLRCIER
401: LYGDNGLDVM DLMKKNLHSA LPVILTRLKQ KQEEWARCHS DFQKVWAEVY AKNHHKSLDH RSFYFKQQDA KNLSTKCLLA EIKDISEKKH QEDLLQAISV
501: RTMPSFTPDL EFSYGDSQIH EDLYLLIKYY CEELCTTEQA DKVINLWTTF LEPMFGILSR SQGNLAMDEK LKSNNQELDD ASVAVKDSAS GSNRKKHPRS
601: PEKLKMDNPT VQGSSPGKDA SSNRVKTAKH DKLHDDEAMT NEVIQSSKLV SPRKDQVTER EEGELSPTGN CEVANGPEGE DGSSAFSERF LQTVKPVAKH
701: VPWLSKATET CSQNDSRVFY GNDSYYVLFR LHQMLYERMQ SAKKQAEKKG KAPDNTIPDS YSRFMDALYN LLDGSSDNTK YEDECRSALG AQSYVLFTLD
801: KLVQKLVKQL HAVAADETDT KLVQLYAYEN CRRKGRFFDL VYDENARAIL HEANMYRIIY SSVETSLSIQ LMNSHPEVTG TAMEPGFADY LQNDFLTSVN
901: DEEKHGVFLK RNKEKLTGID ESSGMLVAME GLNVVNGIEA KMTCSTSKVK YIANTSDLLY RSKQRKRNPM GQRLKRVLVL RFLVAKVL
101: NDAISFVTKI KARFGGDEDA YKSFLDILNL YRKDKKSITE VYKEVTLLFK GHEDLLVEFV NFLPSCSEST STKNEVPLQK RIKRERKLEY ESEHSDQRED
201: GDENLVACPA GNSLGNSLVK KEGQRGYLKA EDNGGIRDHE NSERDTDRTD KSAAAGSNDT ENQKSPPSAS KYVGVPINEL DLSECVQCTP SYRLLPKDYP
301: VEIPRYRNAL GKKILNDHLV SVTSGSEDYS FSHMRKNQYE ESLFRCEDDR YEMDMLLGSV SSAIKHVEIL LEKINNNTIS TDTICIEKHL SPMNLRCIER
401: LYGDNGLDVM DLMKKNLHSA LPVILTRLKQ KQEEWARCHS DFQKVWAEVY AKNHHKSLDH RSFYFKQQDA KNLSTKCLLA EIKDISEKKH QEDLLQAISV
501: RTMPSFTPDL EFSYGDSQIH EDLYLLIKYY CEELCTTEQA DKVINLWTTF LEPMFGILSR SQGNLAMDEK LKSNNQELDD ASVAVKDSAS GSNRKKHPRS
601: PEKLKMDNPT VQGSSPGKDA SSNRVKTAKH DKLHDDEAMT NEVIQSSKLV SPRKDQVTER EEGELSPTGN CEVANGPEGE DGSSAFSERF LQTVKPVAKH
701: VPWLSKATET CSQNDSRVFY GNDSYYVLFR LHQMLYERMQ SAKKQAEKKG KAPDNTIPDS YSRFMDALYN LLDGSSDNTK YEDECRSALG AQSYVLFTLD
801: KLVQKLVKQL HAVAADETDT KLVQLYAYEN CRRKGRFFDL VYDENARAIL HEANMYRIIY SSVETSLSIQ LMNSHPEVTG TAMEPGFADY LQNDFLTSVN
901: DEEKHGVFLK RNKEKLTGID ESSGMLVAME GLNVVNGIEA KMTCSTSKVK YIANTSDLLY RSKQRKRNPM GQRLKRVLVL RFLVAKVL
0001: MKRAREDVHT DTQKRKPEVS SRGETNKLPR TIDALTYLKA VKDIFHDNKE KYESFLELMK EFKAQTIDTN GVIERIKVLF KGYRDLLLGF NTFLPKGYKI
0101: TLLPEEEKPK IRVDFKDAIG FVTKIKTRFG DDEHAYKRFL DILNLYRKEK KSISEVYEEV TMLFKGHEDL LMEFVNFLPN CPESAPSTKN AVPRHKGTAT
0201: TAMHSDKKRK QRCKLEDYSG HSDQREDGDE NLVTCSADSP VGEGQPGYFR DYENREDTET DTADRTEKSA ASGSQDIGNH KSTTKYVGTP INELDLSECT
0301: QCTPSYRLLP KDYAVEIPSY RNTLGKKTLN DHLVSVTSGS EDYSFSHMRK NQYEESLFRC EDDRYEMDML LGSVSSAIKQ VEILLEKMNN NTISVDSTIC
0401: IEKHLSAMNL RCIERLYGDN GLDVMDLLKK NMHSALPVIL TRLKQKQEEW ARCHSDFQKV WAEVYAKNHH KSLDHRSFYF KQQDSKNLST KCLVAEVKDI
0501: SEKKHQEDLL QAIAVRVMPL FTPDLEFNYC DTQIHEDLYL LIKYYCEEIC ATEQSDKVMK LWITFLEPIF GILSRSQDNL ALEDVSKLKN NRELQDACLA
0601: VKETASGSNR KHPISPKRLS KDNTKMQGSS SREDVSANIK VKTAQPDKLQ DDAAMTNEVI QSSKFVSPKN DQIMEDEGNH MVNAASVEKH ELEEGELSPT
0701: ASREQSNFEV NGQNAFKPLQ KVTDNVRSNK DKQSCDKKGA KNKTRAEDDK QENCHKLSEN NKTASEMLVS GTKVSCHEEN NRVMNCNGRG SVAGEMANGN
0801: QGEDGSFAFS ERFLQTVKPV AKHLSWPLQA SETCSQNDSQ VFYGNDSYYV LFRLHQMLYE RIQTAKKHSE KKWKAADNTT PDSYPRFMDA LYNLLDGSID
0901: NTKFEDECRA IFGAQSYVLF TLDKLVQKFV KHLHSVASDE TDTKLLQLHA YENYRKPGKF FDLVYHENAC ALLHEANIYR IRYSSEGTRL SIQLMNSGNN
1001: QLEVMGVAME PAFADYLQNK CLKSVNDEEN HGLFLNRNKK KFTSLDESRG MPVAMERLNI INEMECRMAC SSSKVKYVAN TSDLLYRSKQ GKPNSRVSEI
1101: LKQRRISRFH IMLNCRLCAL PL
0101: TLLPEEEKPK IRVDFKDAIG FVTKIKTRFG DDEHAYKRFL DILNLYRKEK KSISEVYEEV TMLFKGHEDL LMEFVNFLPN CPESAPSTKN AVPRHKGTAT
0201: TAMHSDKKRK QRCKLEDYSG HSDQREDGDE NLVTCSADSP VGEGQPGYFR DYENREDTET DTADRTEKSA ASGSQDIGNH KSTTKYVGTP INELDLSECT
0301: QCTPSYRLLP KDYAVEIPSY RNTLGKKTLN DHLVSVTSGS EDYSFSHMRK NQYEESLFRC EDDRYEMDML LGSVSSAIKQ VEILLEKMNN NTISVDSTIC
0401: IEKHLSAMNL RCIERLYGDN GLDVMDLLKK NMHSALPVIL TRLKQKQEEW ARCHSDFQKV WAEVYAKNHH KSLDHRSFYF KQQDSKNLST KCLVAEVKDI
0501: SEKKHQEDLL QAIAVRVMPL FTPDLEFNYC DTQIHEDLYL LIKYYCEEIC ATEQSDKVMK LWITFLEPIF GILSRSQDNL ALEDVSKLKN NRELQDACLA
0601: VKETASGSNR KHPISPKRLS KDNTKMQGSS SREDVSANIK VKTAQPDKLQ DDAAMTNEVI QSSKFVSPKN DQIMEDEGNH MVNAASVEKH ELEEGELSPT
0701: ASREQSNFEV NGQNAFKPLQ KVTDNVRSNK DKQSCDKKGA KNKTRAEDDK QENCHKLSEN NKTASEMLVS GTKVSCHEEN NRVMNCNGRG SVAGEMANGN
0801: QGEDGSFAFS ERFLQTVKPV AKHLSWPLQA SETCSQNDSQ VFYGNDSYYV LFRLHQMLYE RIQTAKKHSE KKWKAADNTT PDSYPRFMDA LYNLLDGSID
0901: NTKFEDECRA IFGAQSYVLF TLDKLVQKFV KHLHSVASDE TDTKLLQLHA YENYRKPGKF FDLVYHENAC ALLHEANIYR IRYSSEGTRL SIQLMNSGNN
1001: QLEVMGVAME PAFADYLQNK CLKSVNDEEN HGLFLNRNKK KFTSLDESRG MPVAMERLNI INEMECRMAC SSSKVKYVAN TSDLLYRSKQ GKPNSRVSEI
1101: LKQRRISRFH IMLNCRLCAL PL
Arabidopsis Description
SNL6Paired amphipathic helix protein Sin3-like 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9XIK6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.