Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra019933.1-P | Field mustard | nucleus | 97.64 | 97.64 |
| CDY37976 | Canola | nucleus | 90.94 | 93.52 |
| AT1G10450.3 | Thale cress | endoplasmic reticulum, plastid | 74.31 | 64.36 |
| CDY30912 | Canola | nucleus | 62.4 | 60.38 |
| CDY31594 | Canola | nucleus | 23.03 | 58.94 |
| CDY55066 | Canola | cytosol | 23.03 | 58.79 |
| CDY24499 | Canola | nucleus | 64.17 | 58.79 |
| CDY23529 | Canola | cytosol | 8.96 | 57.59 |
| CDY55065 | Canola | nucleus | 39.47 | 57.37 |
| CDY45153 | Canola | nucleus | 54.53 | 57.23 |
| CDY33612 | Canola | nucleus | 64.76 | 57.07 |
| CDY48380 | Canola | cytosol | 8.86 | 56.96 |
| CDY31595 | Canola | nucleus | 38.58 | 56.65 |
| CDY06480 | Canola | cytosol | 12.7 | 54.66 |
| CDY08302 | Canola | cytosol | 13.09 | 51.95 |
| CDY64434 | Canola | nucleus | 3.15 | 51.61 |
| CDY08301 | Canola | cytosol | 13.58 | 49.64 |
| CDY23528 | Canola | cytosol | 7.28 | 47.74 |
| CDY48381 | Canola | cytosol | 7.28 | 47.74 |
| CDY67989 | Canola | nucleus | 6.89 | 44.87 |
| CDY14679 | Canola | cytosol, mitochondrion, nucleus | 3.74 | 42.22 |
| CDY16234 | Canola | cytosol, mitochondrion, nucleus | 3.74 | 42.22 |
| CDY42981 | Canola | mitochondrion | 6.4 | 40.62 |
| CDY66875 | Canola | mitochondrion | 6.3 | 40.0 |
| CDY71516 | Canola | cytosol, mitochondrion, nucleus | 10.24 | 40.0 |
| CDY40291 | Canola | cytoskeleton, cytosol, nucleus | 3.35 | 39.53 |
| CDY70453 | Canola | cytosol | 12.99 | 39.4 |
| CDX68358 | Canola | nucleus | 49.7 | 39.33 |
| CDY28457 | Canola | cytoskeleton, cytosol, nucleus | 3.25 | 39.29 |
| CDY23527 | Canola | nucleus | 49.8 | 39.1 |
| KRG99216 | Soybean | nucleus | 53.05 | 39.03 |
| CDY03764 | Canola | cytosol | 6.2 | 38.89 |
| CDY11625 | Canola | nucleus | 49.31 | 38.84 |
| CDY42984 | Canola | cytosol, mitochondrion, nucleus | 6.1 | 38.75 |
| KRH45772 | Soybean | nucleus | 53.05 | 38.64 |
| CDY38781 | Canola | nucleus | 48.72 | 38.4 |
| CDY42979 | Canola | cytosol, mitochondrion, nucleus | 5.31 | 37.24 |
| Solyc05g006540.2.1 | Tomato | nucleus | 49.21 | 36.76 |
| PGSC0003DMT400058222 | Potato | nucleus | 49.31 | 36.7 |
| CDX70587 | Canola | nucleus | 46.46 | 34.83 |
| CDX78604 | Canola | nucleus | 46.26 | 34.81 |
| CDX91007 | Canola | nucleus | 45.08 | 34.62 |
| CDX85568 | Canola | nucleus | 45.08 | 34.28 |
| CDY28683 | Canola | mitochondrion, nucleus | 45.08 | 34.03 |
| CDY42983 | Canola | nucleus | 4.82 | 30.25 |
| KRH45776 | Soybean | nucleus | 26.67 | 29.39 |
| CDY28682 | Canola | nucleus | 35.83 | 29.38 |
| CDY64433 | Canola | cytosol | 6.69 | 25.66 |
| CDY42986 | Canola | cytosol | 4.92 | 23.92 |
| CDY03763 | Canola | cytosol | 6.69 | 23.86 |
| CDY16235 | Canola | mitochondrion | 5.61 | 16.96 |
| CDY14678 | Canola | cytosol | 5.41 | 15.9 |
Protein Annotations
| Gene3D:1.20.1160.11 | MapMan:12.3.2.4.2 | GO:A0A078DVN6 | EnsemblPlants:CDX93425 | ProteinID:CDX93425 | ProteinID:CDX93425.1 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| EnsemblPlantsGene:GSBRNA2T00156089001 | InterPro:HDAC_interact_dom | InterPro:IPR003822 | InterPro:PAH | InterPro:PAH_sf | PFAM:PF02671 |
| PFAM:PF08295 | PFAM:PF16879 | PFscan:PS51477 | PANTHER:PTHR12346 | PANTHER:PTHR12346:SF21 | SMART:SM00761 |
| SUPFAM:SSF47762 | InterPro:Sin3_C | UniParc:UPI0004EE3DFA | SEG:seg | : | : |
Description
BnaA06g06230D
Coordinates
chrLK031876:-:144915..150019
Molecular Weight (calculated)
115705.0 Da
IEP (calculated)
6.770
GRAVY (calculated)
-0.683
Length
1016 amino acids
Sequence
(BLAST)
(BLAST)
0001: MKRERETKTN NRGLTTSDAL HYLKTVRNIF HDNVGKYETF LEVMRDFKAQ RVDTAGVIER IKDLFKGYND LLLGFNTFLP KDHTITLSPE EEKPKNKVDY
0101: NDAISFVTKI KARFGGDEDA YKSFLDILNM YRKDKKSITE VYKEVTLLFK GHEDLLVEFV NFLPSCSEST STKNAVPLRK RIKRERKLEY ESEHSDQRED
0201: GDENLVACPA GNSLGNSLVK KEGQRAYLKA EDNGGIREES ERDTDRTDKS AAAGSNDIGN KESTLSASKY VGVPINELDL SECVQCTPSY RLLPKDYPIE
0301: IPRYRNALGK KILNDHLVSV TSGSEDYSFS HMRKNQYEES LFRCEDDRYE MDMLLGSVSS AIKHVEILLE KINNNTISTD TICVEKHLSP MNLRCIERLY
0401: GDNGLDVMDL MKKNLHSALP VILTRLKQKQ EEWARCHSDF QKVWAEVYAK NHHKSLDHRS FYFKQQDAKN LSTKCLVAEI KEISEKKHQE DLLQAISVRT
0501: MPSFTPDLEF SYGDSQIHED LYLLIKYYCE ELCTTEQADK VMKLWTTFLE PMFGIVSRSQ GNLAMDEELK SNNQELQDGC VAVKDSASGS NRKKHPRSPE
0601: KLKKDNPAVQ GSSPGKDVSS NIVKTVKHDK QQDDEALTNE VIQSSKLVSP RNDQITENVE IRKAKEVSVE VEREEGELSP TGTCEVANGP EGEDGSSAFS
0701: ERFLETIKPV ANHVPGPLKA TETGSQNDSR VFYGNDSCYV LFRFHQMLYE RMQSAKKQAE KKGKAPDNTT PDSYSRFMDA LYNLLDGSSD NTKYEDECRS
0801: AFGAQSYVLF TLDKLVQKLV KQLHAVASDE TDTKLVQLYA YENCRKKGRF FDLVYHENAR AILHEASMYR IRYSSVETSL SIQLMNSHPE VTGAAMEPGF
0901: ADYLQNDFLT SVNDEEKHGV FLKRNKEKLT GIDESSGMLV AMEGLNVING IEAKMACSTS KVKYIANTSD LLYRSKQRKR NPVGQRLKRV SEISKQRRIS
1001: RFHIMLNCKT MALPSL
0101: NDAISFVTKI KARFGGDEDA YKSFLDILNM YRKDKKSITE VYKEVTLLFK GHEDLLVEFV NFLPSCSEST STKNAVPLRK RIKRERKLEY ESEHSDQRED
0201: GDENLVACPA GNSLGNSLVK KEGQRAYLKA EDNGGIREES ERDTDRTDKS AAAGSNDIGN KESTLSASKY VGVPINELDL SECVQCTPSY RLLPKDYPIE
0301: IPRYRNALGK KILNDHLVSV TSGSEDYSFS HMRKNQYEES LFRCEDDRYE MDMLLGSVSS AIKHVEILLE KINNNTISTD TICVEKHLSP MNLRCIERLY
0401: GDNGLDVMDL MKKNLHSALP VILTRLKQKQ EEWARCHSDF QKVWAEVYAK NHHKSLDHRS FYFKQQDAKN LSTKCLVAEI KEISEKKHQE DLLQAISVRT
0501: MPSFTPDLEF SYGDSQIHED LYLLIKYYCE ELCTTEQADK VMKLWTTFLE PMFGIVSRSQ GNLAMDEELK SNNQELQDGC VAVKDSASGS NRKKHPRSPE
0601: KLKKDNPAVQ GSSPGKDVSS NIVKTVKHDK QQDDEALTNE VIQSSKLVSP RNDQITENVE IRKAKEVSVE VEREEGELSP TGTCEVANGP EGEDGSSAFS
0701: ERFLETIKPV ANHVPGPLKA TETGSQNDSR VFYGNDSCYV LFRFHQMLYE RMQSAKKQAE KKGKAPDNTT PDSYSRFMDA LYNLLDGSSD NTKYEDECRS
0801: AFGAQSYVLF TLDKLVQKLV KQLHAVASDE TDTKLVQLYA YENCRKKGRF FDLVYHENAR AILHEASMYR IRYSSVETSL SIQLMNSHPE VTGAAMEPGF
0901: ADYLQNDFLT SVNDEEKHGV FLKRNKEKLT GIDESSGMLV AMEGLNVING IEAKMACSTS KVKYIANTSD LLYRSKQRKR NPVGQRLKRV SEISKQRRIS
1001: RFHIMLNCKT MALPSL
0001: MRDLLLGTTI PSYFSWLGLF PRFLVWFGFL KASFFCSSRN QSAGESGRRL KMKRAREDVH TDTQKRKPEV SSRGETNKLP RTIDALTYLK AVKDIFHDNK
0101: EKYESFLELM KEFKAQTIDT NGVIERIKVL FKGYRDLLLG FNTFLPKGYK ITLLPEEEKP KIRVDFKDAI GFVTKIKTRF GDDEHAYKRF LDILNLYRKE
0201: KKSISEVYEE VTMLFKGHED LLMEFVNFLP NCPESAPSTK NAVPRHKGTA TTAMHSDKKR KQRCKLEDYS GHSDQREDGD ENLVTCSADS PVGEGQPGYF
0301: RDYENREDTE TDTADRTEKS AASGSQDIGN HKSTTKYVGT PINELDLSEC TQCTPSYRLL PKDYAVEIPS YRNTLGKKTL NDHLVSVTSG SEDYSFSHMR
0401: KNQYEESLFR CEDDRYEMDM LLGSVSSAIK QVEILLEKMN NNTISVDSTI CIEKHLSAMN LRCIERLYGD NGLDVMDLLK KNMHSALPVI LTRLKQKQEE
0501: WARCHSDFQK VWAEVYAKNH HKSLDHRSFY FKQQDSKNLS TKCLVAEVKD ISEKKHQEDL LQAIAVRVMP LFTPDLEFNY CDTQIHEDLY LLIKYYCEEI
0601: CATEQSDKVM KLWITFLEPI FGILSRSQDN LALEDVSKLK NNRELQDACL AVKETASGSN RKHPISPKRL SKDNTKMQGS SSREDVSANI KVKTAQPDKL
0701: QDDAAMTNEV IQSSKFVSPK NDQIMEDEGN HMVNAASVEK HELEEGELSP TASREQSNFE VNGQNAFKPL QKVTDNVRSN KDKQSCDKKG AKNKTRAEDD
0801: KQENCHKLSE NNKTASEMLV SGTKVSCHEE NNRVMNCNGR GSVAGEMANG NQGEDGSFAF SERFLQTVKP VAKHLSWPLQ ASETCSQNDS QVFYGNDSYY
0901: VLFRLHQMLY ERIQTAKKHS EKKWKAADNT TPDSYPRFMD ALYNLLDGSI DNTKFEDECR AIFGAQSYVL FTLDKLVQKF VKHLHSVASD ETDTKLLQLH
1001: AYENYRKPGK FFDLVYHENA CALLHEANIY RIRYSSEGTR LSIQLMNSGN NQLEVMGVAM EPAFADYLQN KCLKSVNDEE NHGLFLNRNK KKFTSLDESR
1101: GMPVAMERLN IINEMECRMA CSSSKVKYVA NTSDLLYRSK QGKPNSRVSE ILKQRRISRF HIMLNCRLCA LPL
0101: EKYESFLELM KEFKAQTIDT NGVIERIKVL FKGYRDLLLG FNTFLPKGYK ITLLPEEEKP KIRVDFKDAI GFVTKIKTRF GDDEHAYKRF LDILNLYRKE
0201: KKSISEVYEE VTMLFKGHED LLMEFVNFLP NCPESAPSTK NAVPRHKGTA TTAMHSDKKR KQRCKLEDYS GHSDQREDGD ENLVTCSADS PVGEGQPGYF
0301: RDYENREDTE TDTADRTEKS AASGSQDIGN HKSTTKYVGT PINELDLSEC TQCTPSYRLL PKDYAVEIPS YRNTLGKKTL NDHLVSVTSG SEDYSFSHMR
0401: KNQYEESLFR CEDDRYEMDM LLGSVSSAIK QVEILLEKMN NNTISVDSTI CIEKHLSAMN LRCIERLYGD NGLDVMDLLK KNMHSALPVI LTRLKQKQEE
0501: WARCHSDFQK VWAEVYAKNH HKSLDHRSFY FKQQDSKNLS TKCLVAEVKD ISEKKHQEDL LQAIAVRVMP LFTPDLEFNY CDTQIHEDLY LLIKYYCEEI
0601: CATEQSDKVM KLWITFLEPI FGILSRSQDN LALEDVSKLK NNRELQDACL AVKETASGSN RKHPISPKRL SKDNTKMQGS SSREDVSANI KVKTAQPDKL
0701: QDDAAMTNEV IQSSKFVSPK NDQIMEDEGN HMVNAASVEK HELEEGELSP TASREQSNFE VNGQNAFKPL QKVTDNVRSN KDKQSCDKKG AKNKTRAEDD
0801: KQENCHKLSE NNKTASEMLV SGTKVSCHEE NNRVMNCNGR GSVAGEMANG NQGEDGSFAF SERFLQTVKP VAKHLSWPLQ ASETCSQNDS QVFYGNDSYY
0901: VLFRLHQMLY ERIQTAKKHS EKKWKAADNT TPDSYPRFMD ALYNLLDGSI DNTKFEDECR AIFGAQSYVL FTLDKLVQKF VKHLHSVASD ETDTKLLQLH
1001: AYENYRKPGK FFDLVYHENA CALLHEANIY RIRYSSEGTR LSIQLMNSGN NQLEVMGVAM EPAFADYLQN KCLKSVNDEE NHGLFLNRNK KKFTSLDESR
1101: GMPVAMERLN IINEMECRMA CSSSKVKYVA NTSDLLYRSK QGKPNSRVSE ILKQRRISRF HIMLNCRLCA LPL
Arabidopsis Description
SNL6Paired amphipathic helix protein Sin3-like 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9XIK6]
SUBAcon: [endoplasmic reticulum,plastid]
SUBAcon: [endoplasmic reticulum,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.