Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400058222 | Potato | nucleus | 98.46 | 98.1 |
| KRH45772 | Soybean | nucleus | 59.34 | 57.85 |
| KRG99216 | Soybean | nucleus | 58.68 | 57.78 |
| CDY31594 | Canola | nucleus | 15.44 | 52.9 |
| Solyc02g087370.1.1 | Tomato | cytosol | 7.28 | 51.56 |
| CDY30912 | Canola | nucleus | 39.41 | 51.05 |
| Solyc02g067570.2.1 | Tomato | nucleus | 50.44 | 50.89 |
| Solyc02g087360.2.1 | Tomato | nucleus | 50.07 | 50.71 |
| Bra027831.1-P | Field mustard | nucleus | 27.57 | 50.27 |
| CDY37976 | Canola | nucleus | 36.25 | 49.9 |
| Bra017891.1-P | Field mustard | nucleus | 35.88 | 49.8 |
| Bra019933.1-P | Field mustard | nucleus | 36.76 | 49.21 |
| CDX93425 | Canola | nucleus | 36.76 | 49.21 |
| Bra035418.1-P | Field mustard | nucleus | 40.0 | 49.14 |
| CDY24499 | Canola | nucleus | 39.93 | 48.96 |
| Solyc02g087380.1.1 | Tomato | nucleus, plastid | 4.93 | 48.91 |
| AT1G59890.2 | Thale cress | nucleus | 41.84 | 48.76 |
| CDY06480 | Canola | cytosol | 8.31 | 47.88 |
| CDY45153 | Canola | nucleus | 33.53 | 47.11 |
| CDY33612 | Canola | nucleus | 39.85 | 47.01 |
| CDY08302 | Canola | cytosol | 8.82 | 46.88 |
| CDY31595 | Canola | nucleus | 23.53 | 46.24 |
| Bra037066.1-P | Field mustard | nucleus | 9.26 | 45.32 |
| Bra037065.1-P | Field mustard | nucleus | 8.01 | 45.23 |
| KRH45776 | Soybean | nucleus | 30.51 | 45.01 |
| CDY08301 | Canola | cytosol | 9.19 | 44.96 |
| AT1G10450.3 | Thale cress | endoplasmic reticulum, plastid | 38.46 | 44.59 |
| Solyc02g087390.1.1 | Tomato | cytosol | 14.19 | 37.92 |
| Solyc07g041320.1.1 | Tomato | cytosol | 5.88 | 37.91 |
| Solyc10g048000.1.1 | Tomato | endoplasmic reticulum | 8.09 | 37.16 |
| Solyc10g047970.1.1 | Tomato | cytosol | 5.96 | 35.84 |
| Solyc04g025000.1.1 | Tomato | cytosol, mitochondrion, nucleus | 5.07 | 35.75 |
| Solyc11g045320.1.1 | Tomato | cytosol | 3.75 | 35.17 |
| Solyc10g047980.1.1 | Tomato | nucleus | 5.59 | 34.7 |
| Solyc10g047990.1.1 | Tomato | cytosol | 3.75 | 34.23 |
| Solyc04g024990.1.1 | Tomato | cytosol | 5.22 | 26.01 |
Protein Annotations
| Gene3D:1.20.1160.11 | MapMan:12.3.2.4.2 | ncoils:Coil | GO:GO:0000118 | GO:GO:0000122 | GO:GO:0000785 |
| GO:GO:0001106 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004407 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005654 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0006464 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016575 |
| GO:GO:0016787 | GO:GO:0019538 | InterPro:HDAC_interact_dom | InterPro:IPR003822 | UniProt:K4BWI0 | InterPro:PAH |
| InterPro:PAH_sf | PFAM:PF02671 | PFAM:PF08295 | PFAM:PF16879 | PFscan:PS51477 | PANTHER:PTHR12346 |
| PANTHER:PTHR12346:SF21 | SMART:SM00761 | SUPFAM:SSF47762 | InterPro:Sin3_C | EnsemblPlantsGene:Solyc05g006540.2 | EnsemblPlants:Solyc05g006540.2.1 |
| UniParc:UPI00027673D9 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr5:-:1156675..1164853
Molecular Weight (calculated)
154104.0 Da
IEP (calculated)
5.659
GRAVY (calculated)
-0.731
Length
1360 amino acids
Sequence
(BLAST)
(BLAST)
0001: MSSQLKRPVV VSSRGEPSGQ SPMMGGGSAN KLTTNDALSY LKSVKEIFQD RRDKYDEFLD VMKDFKSQRI DTSGVIARVK DLFKGHRTLI LGFNTFLPKG
0101: YEITNPEDEA PVKKPVEFEE AISFVNKIKT RFQGDDFVYK SFLDILNLYR KENKAIAEVY NEVSYLFRGH ADLLEEFTHF LPDAMAAARA RNAQAHRAPI
0201: MRYDEKSSSM TAARHMHVEK ATSLVVRENA VDRSDPEYEE TTMRTERERR ERQYEDRELD RKSVHRDVAV DQFEPSMQDH GFAYCERVKE RLQDMGERKQ
0301: FFKCLNFYCK EGVTRTQLQS GVSSLLQKHP DLMEGFDEFI SHCERTDGYL AAILSKTQSL WSDEPNPKSE KVEDRDKDRD CEWEERNRLR ETRERDRPVA
0401: YATRDAQGQK MSLYSKDKYA AKPIHELDLS NCDSCSPSYR LLPKNYPIPL ASQKTDIGAE VLNDHWVSVT SGSEDYSFKH MRKNQYEESL FRCEDDRFEL
0501: DMLLESVNAT TRRVEELLNK INDNTISSDS HIRIEEHFTA LNLRCIERLY GDHGLDVMDV LRKNAPLALP VILTRLKQKQ EEWARCRSDF NKVWAEIYAK
0601: NYHKSLDHRS FYFKQQDTKS LSTKALLAEI KEISENKCKE DDVLLSVAAG NGQPIITHLE FEYPDSDIHE DLYQIIKYSC IEVCTREQLD KVMKIWTTFL
0701: EPIFGVLRPP QGEVDGVDVE KAKNLNAKDK TAIEGKKVGS PASGSGMNCR QSSSRNGDEL PTSEHVISSR VQIADGENGF KDDSSPNVNG VMLKIATSKN
0801: LLHHGKSDAN LNMADGASGL SREAFCADPL VLSNSTTVGE SHGRVCIETA SGHGAGTSRP SGSTIKREPE IVSSNDSKDG GFVDPKAEGI KVEKCLEESV
0901: GKCKLEREEG ELTPNGDFED NFTPSSEGGQ NVSHSLKGSS SSKLYQSGHG EEKNCGGDRG CENDADEEGE ASAHGTSEDS ENASENCDVS GSESANGEGS
1001: HEEREEDGDN DVNDNKVESE GEVEGTADAH DAEGDGAVMP FSERLLHTSR PLTKHVPSIF HVREKESRIF YGNDSFYVLF RLHQTLYERL QKAKSHSSSA
1101: EHRWRVSNAI NPTESYSRFR SALYNLLDGS SDNAKFEDDC RAIIGAQSYL LFTLDKLIYK IVKQLQTIAT DELEGKLLQL YTYEISRKSS TFSDVVYHEN
1201: VRALLHDETI YRIACSSKKT RLSIQLMDYV YDKPEMSAVT MDPNFAAYMS NELLSVIPQK ENPGVFLTRN KRKSGVRDET FTSEAMEGLK FFNGLECKIA
1301: CSSSKVSYVL DTEDFLIRSR KRRRILKENL LSNGHSECLN KSNKIQRFRR LLSVEHAHFA
0101: YEITNPEDEA PVKKPVEFEE AISFVNKIKT RFQGDDFVYK SFLDILNLYR KENKAIAEVY NEVSYLFRGH ADLLEEFTHF LPDAMAAARA RNAQAHRAPI
0201: MRYDEKSSSM TAARHMHVEK ATSLVVRENA VDRSDPEYEE TTMRTERERR ERQYEDRELD RKSVHRDVAV DQFEPSMQDH GFAYCERVKE RLQDMGERKQ
0301: FFKCLNFYCK EGVTRTQLQS GVSSLLQKHP DLMEGFDEFI SHCERTDGYL AAILSKTQSL WSDEPNPKSE KVEDRDKDRD CEWEERNRLR ETRERDRPVA
0401: YATRDAQGQK MSLYSKDKYA AKPIHELDLS NCDSCSPSYR LLPKNYPIPL ASQKTDIGAE VLNDHWVSVT SGSEDYSFKH MRKNQYEESL FRCEDDRFEL
0501: DMLLESVNAT TRRVEELLNK INDNTISSDS HIRIEEHFTA LNLRCIERLY GDHGLDVMDV LRKNAPLALP VILTRLKQKQ EEWARCRSDF NKVWAEIYAK
0601: NYHKSLDHRS FYFKQQDTKS LSTKALLAEI KEISENKCKE DDVLLSVAAG NGQPIITHLE FEYPDSDIHE DLYQIIKYSC IEVCTREQLD KVMKIWTTFL
0701: EPIFGVLRPP QGEVDGVDVE KAKNLNAKDK TAIEGKKVGS PASGSGMNCR QSSSRNGDEL PTSEHVISSR VQIADGENGF KDDSSPNVNG VMLKIATSKN
0801: LLHHGKSDAN LNMADGASGL SREAFCADPL VLSNSTTVGE SHGRVCIETA SGHGAGTSRP SGSTIKREPE IVSSNDSKDG GFVDPKAEGI KVEKCLEESV
0901: GKCKLEREEG ELTPNGDFED NFTPSSEGGQ NVSHSLKGSS SSKLYQSGHG EEKNCGGDRG CENDADEEGE ASAHGTSEDS ENASENCDVS GSESANGEGS
1001: HEEREEDGDN DVNDNKVESE GEVEGTADAH DAEGDGAVMP FSERLLHTSR PLTKHVPSIF HVREKESRIF YGNDSFYVLF RLHQTLYERL QKAKSHSSSA
1101: EHRWRVSNAI NPTESYSRFR SALYNLLDGS SDNAKFEDDC RAIIGAQSYL LFTLDKLIYK IVKQLQTIAT DELEGKLLQL YTYEISRKSS TFSDVVYHEN
1201: VRALLHDETI YRIACSSKKT RLSIQLMDYV YDKPEMSAVT MDPNFAAYMS NELLSVIPQK ENPGVFLTRN KRKSGVRDET FTSEAMEGLK FFNGLECKIA
1301: CSSSKVSYVL DTEDFLIRSR KRRRILKENL LSNGHSECLN KSNKIQRFRR LLSVEHAHFA
0001: MVGGGSAQKL TTNDALAYLK AVKDKFQDQR GKYDEFLEVM KNFKSQRVDT AGVITRVKEL FKGHQELILG FNTFLPKGFE ITLQPEDGQP PLKKRVEFEE
0101: AISFVNKIKT RFQGDDRVYK SFLDILNMYR RDSKSITEVY QEVAILFRDH SDLLVEFTHF LPDTSATASI PSVKTSVRER GVSLADKKDR IITPHPDHDY
0201: GTEHIDQDRE RPIKKENKEH MRGTNKENEH RDARDFEPHS KKEQFLNKKQ KLHIRGDDPA EISNQSKLSG AVPSSSTYDE KGAMKSYSQD LAIVDRVKEK
0301: LNASEYQEFL RCLNLFSKEI ISRPELQSLV GNLIGVYPDL MDSFIEFLVQ CEKNEGLLSG ILTKKSLWSE GKYPQPSLDN DRDQEHKRDD GLRDRDHEKE
0401: RLEKAAANLK WAKPISELDL SNCEQCTPSY RLLPKNYPIS IASQKTEIGK LVLNDHWVSV TSGSEDYSFS HMRKNQYEES LFKCEDDRFE LDMLLESVNS
0501: TTKHVEELLT KINSNELKTN SPIRVEDHLT ALNLRCIERL YGDHGLDVMD VLKKNVSLAL PVILTRLKQK QEEWARCRSD FDKVWAEIYA KNYYKSLDHR
0601: SFYFKQQDSK KLSMKALLAE IKEITEKKRE DDSLLAFAAG NRLSISPDLE FDYPDHDLHE DLYQLIKYSC AEMCSTEQLD KVMKIWTTFV EQIFGVPSRP
0701: QGAEDQEDVV KSMNQNVKSG SSSAGESEGS PHNYASVADS RRSKSSRKAN EHSQLGQTSN SERDGAAGRT SDALCETAQH EKMLKNVVTS DEKPESKQAV
0801: SIERAHDSTA LAVDGLLDQS NGGSSIVHMT GHCNNNLKPV TCGTELELKM NDGNGPKLEV GNKKLLTNGI AVEITSDQEM AGTSKVEREE GELSPNGDFE
0901: EDNFAVYAKT DFETFSKAND STGNNISGDR SREGEPSCLE TRAENDAEGD ENAARSSEDS RNEYENGDVS GTESGGGEDP EDDLDNNNKG ESEGEAECMA
1001: DAHDAEENGS ALPVSARFLL HVKPLVKYVP SAIALHDKDK DSLKNSQVFY GNDSFYVLFR LHRILYERIL SAKVNSSSPE GKWRTSNTKN PTDSYARFMT
1101: ALYNLLDGTS DNAKFEDDCR AIIGTQSYIL FTLDKLIHKF IKHLQVVVAD EMDNKLLQLY FYEKSRRPET IFDAVYYDNT RVLLPDENIY RIECRLSTPA
1201: KLSIQLMCNG LDKPDVTSVS IDPTFAAYLH NDFLSIQPNA REDRRIYLNR NKRKVCREDE QLYSTDEVKI KNGLECKIAC GSSKVSYVLE TEDLLVRVKK
1301: RRKTLCHNQD SWRQNKNKSG NSPLLTSPDR AKLHSLSS
0101: AISFVNKIKT RFQGDDRVYK SFLDILNMYR RDSKSITEVY QEVAILFRDH SDLLVEFTHF LPDTSATASI PSVKTSVRER GVSLADKKDR IITPHPDHDY
0201: GTEHIDQDRE RPIKKENKEH MRGTNKENEH RDARDFEPHS KKEQFLNKKQ KLHIRGDDPA EISNQSKLSG AVPSSSTYDE KGAMKSYSQD LAIVDRVKEK
0301: LNASEYQEFL RCLNLFSKEI ISRPELQSLV GNLIGVYPDL MDSFIEFLVQ CEKNEGLLSG ILTKKSLWSE GKYPQPSLDN DRDQEHKRDD GLRDRDHEKE
0401: RLEKAAANLK WAKPISELDL SNCEQCTPSY RLLPKNYPIS IASQKTEIGK LVLNDHWVSV TSGSEDYSFS HMRKNQYEES LFKCEDDRFE LDMLLESVNS
0501: TTKHVEELLT KINSNELKTN SPIRVEDHLT ALNLRCIERL YGDHGLDVMD VLKKNVSLAL PVILTRLKQK QEEWARCRSD FDKVWAEIYA KNYYKSLDHR
0601: SFYFKQQDSK KLSMKALLAE IKEITEKKRE DDSLLAFAAG NRLSISPDLE FDYPDHDLHE DLYQLIKYSC AEMCSTEQLD KVMKIWTTFV EQIFGVPSRP
0701: QGAEDQEDVV KSMNQNVKSG SSSAGESEGS PHNYASVADS RRSKSSRKAN EHSQLGQTSN SERDGAAGRT SDALCETAQH EKMLKNVVTS DEKPESKQAV
0801: SIERAHDSTA LAVDGLLDQS NGGSSIVHMT GHCNNNLKPV TCGTELELKM NDGNGPKLEV GNKKLLTNGI AVEITSDQEM AGTSKVEREE GELSPNGDFE
0901: EDNFAVYAKT DFETFSKAND STGNNISGDR SREGEPSCLE TRAENDAEGD ENAARSSEDS RNEYENGDVS GTESGGGEDP EDDLDNNNKG ESEGEAECMA
1001: DAHDAEENGS ALPVSARFLL HVKPLVKYVP SAIALHDKDK DSLKNSQVFY GNDSFYVLFR LHRILYERIL SAKVNSSSPE GKWRTSNTKN PTDSYARFMT
1101: ALYNLLDGTS DNAKFEDDCR AIIGTQSYIL FTLDKLIHKF IKHLQVVVAD EMDNKLLQLY FYEKSRRPET IFDAVYYDNT RVLLPDENIY RIECRLSTPA
1201: KLSIQLMCNG LDKPDVTSVS IDPTFAAYLH NDFLSIQPNA REDRRIYLNR NKRKVCREDE QLYSTDEVKI KNGLECKIAC GSSKVSYVLE TEDLLVRVKK
1301: RRKTLCHNQD SWRQNKNKSG NSPLLTSPDR AKLHSLSS
Arabidopsis Description
SNL3SIN3-like 3 [Source:TAIR;Acc:AT1G24190]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.