Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc10g047990.1.1 | Tomato | cytosol | 51.33 | 77.85 |
| Solyc10g047980.1.1 | Tomato | nucleus | 74.78 | 77.17 |
| Solyc10g048000.1.1 | Tomato | endoplasmic reticulum | 74.34 | 56.76 |
| PGSC0003DMT400090159 | Potato | cytosol, extracellular, mitochondrion, nucleus | 44.25 | 36.23 |
| Solyc02g087380.1.1 | Tomato | nucleus, plastid | 21.24 | 35.04 |
| PGSC0003DMT400097436 | Potato | cytosol | 71.24 | 32.46 |
| Solyc04g025000.1.1 | Tomato | cytosol, mitochondrion, nucleus | 22.57 | 26.42 |
| Solyc02g087370.1.1 | Tomato | cytosol | 21.24 | 25.0 |
| Solyc07g041320.1.1 | Tomato | cytosol | 23.01 | 24.64 |
| Solyc04g024990.1.1 | Tomato | cytosol | 22.12 | 18.32 |
| CDY55066 | Canola | cytosol | 30.97 | 17.59 |
| Solyc11g045320.1.1 | Tomato | cytosol | 9.73 | 15.17 |
| Solyc02g087390.1.1 | Tomato | cytosol | 30.09 | 13.36 |
| Solyc02g067570.2.1 | Tomato | nucleus | 40.71 | 6.82 |
| Solyc02g087360.2.1 | Tomato | nucleus | 39.82 | 6.7 |
| Solyc05g006540.2.1 | Tomato | nucleus | 35.84 | 5.96 |
| CDY55065 | Canola | nucleus | 4.42 | 1.43 |
Protein Annotations
| Gene3D:1.20.1160.11 | MapMan:35.1 | GO:GO:0000118 | GO:GO:0000122 | GO:GO:0000785 | GO:GO:0001106 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004407 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005654 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0006464 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016575 | GO:GO:0016787 |
| GO:GO:0019538 | InterPro:IPR003822 | UniProt:K4D056 | InterPro:PAH | InterPro:PAH_sf | PFAM:PF02671 |
| PFscan:PS51477 | PANTHER:PTHR12346 | PANTHER:PTHR12346:SF8 | SUPFAM:SSF47762 | EnsemblPlantsGene:Solyc10g047970.1 | EnsemblPlants:Solyc10g047970.1.1 |
| UniParc:UPI0002769EE5 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr10:+:43344141..43346231
Molecular Weight (calculated)
26394.4 Da
IEP (calculated)
4.723
GRAVY (calculated)
-0.398
Length
226 amino acids
Sequence
(BLAST)
(BLAST)
001: MKRLKSDVVD TPPFKWSIYS SNEEPIRYVS SIDPDATRSY IRQIKDTFVD QEGKYDMLVY VMKDLKDGRI NHVGVIERVR ELYKGYPSLI LGFNAYMHNG
101: YEIMLSDEEK ASLKNVTNYE EERNFVENIK VEVRLNEHHD LLDEFSEFLK DSVTPNPLSS LLLVLDPLLP CGYDIILNDE VKSLNKSIHF EQVYILLSGR
201: PYLLDEFSRF LPDSFTTNML SNFGRQ
101: YEIMLSDEEK ASLKNVTNYE EERNFVENIK VEVRLNEHHD LLDEFSEFLK DSVTPNPLSS LLLVLDPLLP CGYDIILNDE VKSLNKSIHF EQVYILLSGR
201: PYLLDEFSRF LPDSFTTNML SNFGRQ
001: MKHLPVVSFK TMVANKKLTT TDALDFLHLV KTKYQDNREI YDSFLTIMKD FRGQRAKTCD VISKVKELFK GQPELLLGFN TFLPTGFEIT LSDDELTSNS
101: KFAHFDEAYE FVNKVKVAIL FQGHRDLLEE FHLFLPHYG
101: KFAHFDEAYE FVNKVKVAIL FQGHRDLLEE FHLFLPHYG
Arabidopsis Description
Paired amphipathic helix (PAH2) superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q84R24]
SUBAcon: [mitochondrion,cytosol]
SUBAcon: [mitochondrion,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.