Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc04g011650.2.1 | |
| Solyc05g054410.2.1 | |
| Solyc06g082520.2.1 | |
| Solyc09g008440.1.1 | |
| Solyc09g091440.2.1 | nucleus |
| Solyc11g012720.1.1 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400003538 | Potato | nucleus | 93.22 | 92.26 |
| Solyc02g067570.2.1 | Tomato | nucleus | 76.99 | 76.71 |
| Solyc02g087370.1.1 | Tomato | cytosol | 10.65 | 74.48 |
| Solyc02g087380.1.1 | Tomato | nucleus, plastid | 7.3 | 71.53 |
| KRH18559 | Soybean | nucleus | 22.71 | 64.89 |
| VIT_14s0066g02330.t01 | Wine grape | nucleus | 63.29 | 61.37 |
| KRG93437 | Soybean | nucleus | 61.58 | 58.99 |
| KRH18561 | Soybean | nucleus | 38.64 | 57.54 |
| CDX91007 | Canola | nucleus | 53.24 | 54.04 |
| Bra006276.1-P | Field mustard | nucleus | 54.13 | 54.01 |
| CDX70587 | Canola | nucleus | 54.43 | 53.95 |
| CDX78604 | Canola | nucleus | 54.21 | 53.93 |
| CDX85568 | Canola | nucleus | 53.09 | 53.37 |
| Bra023501.1-P | Field mustard | nucleus | 53.09 | 53.37 |
| AT5G15020.1 | Thale cress | nucleus | 53.98 | 53.04 |
| AT3G01320.1 | Thale cress | mitochondrion, nucleus | 53.76 | 52.62 |
| Bra040510.1-P | Field mustard | mitochondrion, nucleus | 52.12 | 52.04 |
| CDY28683 | Canola | mitochondrion, nucleus | 51.82 | 51.71 |
| Solyc05g006540.2.1 | Tomato | nucleus | 50.71 | 50.07 |
| Solyc02g087390.1.1 | Tomato | cytosol | 16.98 | 44.79 |
| Solyc10g048000.1.1 | Tomato | endoplasmic reticulum | 9.16 | 41.55 |
| Solyc07g041320.1.1 | Tomato | cytosol | 6.48 | 41.23 |
| Solyc11g045320.1.1 | Tomato | cytosol | 4.39 | 40.69 |
| Solyc10g047970.1.1 | Tomato | cytosol | 6.7 | 39.82 |
| Solyc10g047990.1.1 | Tomato | cytosol | 4.32 | 38.93 |
| Solyc04g025000.1.1 | Tomato | cytosol, mitochondrion, nucleus | 5.58 | 38.86 |
| Solyc10g047980.1.1 | Tomato | nucleus | 6.25 | 38.36 |
| Solyc04g024990.1.1 | Tomato | cytosol | 5.81 | 28.57 |
Protein Annotations
| Gene3D:1.20.1160.11 | MapMan:12.3.2.4.2 | ncoils:Coil | GO:GO:0000118 | GO:GO:0000122 | GO:GO:0000785 |
| GO:GO:0001106 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004407 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005654 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0006464 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016575 |
| GO:GO:0016787 | GO:GO:0019538 | InterPro:HDAC_interact_dom | InterPro:IPR003822 | UniProt:K4BBP3 | InterPro:PAH |
| InterPro:PAH_sf | PFAM:PF02671 | PFAM:PF08295 | PFAM:PF16879 | PFscan:PS51477 | PANTHER:PTHR12346 |
| PANTHER:PTHR12346:SF21 | SMART:SM00761 | SUPFAM:SSF47762 | InterPro:Sin3_C | EnsemblPlantsGene:Solyc02g087360.2 | EnsemblPlants:Solyc02g087360.2.1 |
| UniParc:UPI0002767F38 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr2:-:49784379..49792547
Molecular Weight (calculated)
151703.0 Da
IEP (calculated)
5.009
GRAVY (calculated)
-0.796
Length
1343 amino acids
Sequence
(BLAST)
(BLAST)
0001: MGMIALRLSG HLAPTEENRK FYNPSQVPGS GQGGVGGGSS AGGASASNSK LTTGDALSYL KEVKDMFQSQ RDKYDMFLDV MKDFKAQRID TVGVIARVKD
0101: LFKGHPRLIL GFNTFLPKGY EITLNDEDEA PPKKVEFEEA ISFVNKIKTR FQNDDHVYKS FLDILNMYRK EHKGIDEVYR EVAVLFSDHP DLLDEFTRFL
0201: PDNSGTASAA QTSVGRPSFH RYDERSSAMP ILRQSHMDKR FRRDRIIGPY AERDLSIERP DLDDEKTMMK LHKEQKRRTE KESRDRRTHD QDYKEPDNEN
0301: NEDLSIQRHT DKKKSARKVE EFGGPHEDKD ALKNMYSQEF SFCEKVKERL RSPTDYQAFL KCLHIYSTEI ITRTELQSLV ADLLGKHPDL LEGFGEFLER
0401: CEQDDGFLEG FMRKSRWNDG HASKSAKDDG KEKEPKRETD GTKEKDRYKE KYSGKSIQEL DLSNCKRCTP SYRLLPDDYP IPTASQKSEL GAQVLNDHWV
0501: SVTSGSEDYS FKHMRRNQYE ESLFRCEDDR FELDMLLESV SSTAKRVEEL LNAINDNSIG GAFRVEDHFT VLNLRCIERI YGDHGLDTVD ILRKNPSHAL
0601: PVILTRLKQK QEEWTKCRTD FNKVWSEIYA KNHYKSLDHR SFYFKQQDSK NLGSKSLLAE IKEIKENKQK EDDMILSISA GSRYSITPNL EFDYTDSELH
0701: EDLYKLIKYS CEEVCSSKEQ LDKVLGLWTN FVEQILGVPC RPRDSEATEN DVLLKPHGPK ADGASIGESD GSPSADASTR NCKQSKVISN RDANAPPLRV
0801: NPSRTSFASA DALPKEDGLP VTGEHLTSSD AAPAMGADTV HGRVELTSGR GARQGNGASD DGQVSKSNID NVPASESDTS RSIPLGNGGF AEGSTMNGYN
0901: DDSADPCKNE KEEGELSPNG DFEEDNFVAF RSGASHNESV QYQTRGAEEI GSQDAAGEND ADADDEDSEN VSEAEEDVSG SESAADECSR EEHEEEDDGE
1001: HDELDGKAES EGEAEGTNEA HYAGGDGNVL QMSDRVLLTS KPLTKYAASP VCEGVVKYPR VFYGNETFYV LFRLQQILYE RLLSAKMNSA LSESKWRTGK
1101: DTGSIPYDRF MSALHSLLDG SAENSKFEDD CRSIIGNQSY VLFTLDKLIY KLVKQLQTVS SDELDCKLLQ LYEYERLRKP EKFVDSAYYE NAHVLLQEDS
1201: IYRFECMSSP TRLSIQLMDD RSDKSEVVAV AVDPNFAGYL HNDYLSVKHG KKESSAVLLK RNKRKRADND ESTALCMAME HVILVNGLEC KMASNSSKIS
1301: YVLDTEDFFF RQGGKRRKVS AGRLSCLYQA RVERFHRVLL SSL
0101: LFKGHPRLIL GFNTFLPKGY EITLNDEDEA PPKKVEFEEA ISFVNKIKTR FQNDDHVYKS FLDILNMYRK EHKGIDEVYR EVAVLFSDHP DLLDEFTRFL
0201: PDNSGTASAA QTSVGRPSFH RYDERSSAMP ILRQSHMDKR FRRDRIIGPY AERDLSIERP DLDDEKTMMK LHKEQKRRTE KESRDRRTHD QDYKEPDNEN
0301: NEDLSIQRHT DKKKSARKVE EFGGPHEDKD ALKNMYSQEF SFCEKVKERL RSPTDYQAFL KCLHIYSTEI ITRTELQSLV ADLLGKHPDL LEGFGEFLER
0401: CEQDDGFLEG FMRKSRWNDG HASKSAKDDG KEKEPKRETD GTKEKDRYKE KYSGKSIQEL DLSNCKRCTP SYRLLPDDYP IPTASQKSEL GAQVLNDHWV
0501: SVTSGSEDYS FKHMRRNQYE ESLFRCEDDR FELDMLLESV SSTAKRVEEL LNAINDNSIG GAFRVEDHFT VLNLRCIERI YGDHGLDTVD ILRKNPSHAL
0601: PVILTRLKQK QEEWTKCRTD FNKVWSEIYA KNHYKSLDHR SFYFKQQDSK NLGSKSLLAE IKEIKENKQK EDDMILSISA GSRYSITPNL EFDYTDSELH
0701: EDLYKLIKYS CEEVCSSKEQ LDKVLGLWTN FVEQILGVPC RPRDSEATEN DVLLKPHGPK ADGASIGESD GSPSADASTR NCKQSKVISN RDANAPPLRV
0801: NPSRTSFASA DALPKEDGLP VTGEHLTSSD AAPAMGADTV HGRVELTSGR GARQGNGASD DGQVSKSNID NVPASESDTS RSIPLGNGGF AEGSTMNGYN
0901: DDSADPCKNE KEEGELSPNG DFEEDNFVAF RSGASHNESV QYQTRGAEEI GSQDAAGEND ADADDEDSEN VSEAEEDVSG SESAADECSR EEHEEEDDGE
1001: HDELDGKAES EGEAEGTNEA HYAGGDGNVL QMSDRVLLTS KPLTKYAASP VCEGVVKYPR VFYGNETFYV LFRLQQILYE RLLSAKMNSA LSESKWRTGK
1101: DTGSIPYDRF MSALHSLLDG SAENSKFEDD CRSIIGNQSY VLFTLDKLIY KLVKQLQTVS SDELDCKLLQ LYEYERLRKP EKFVDSAYYE NAHVLLQEDS
1201: IYRFECMSSP TRLSIQLMDD RSDKSEVVAV AVDPNFAGYL HNDYLSVKHG KKESSAVLLK RNKRKRADND ESTALCMAME HVILVNGLEC KMASNSSKIS
1301: YVLDTEDFFF RQGGKRRKVS AGRLSCLYQA RVERFHRVLL SSL
0001: MKRIRDDIYA TGSQFKRPLG SSRGESYEQS PITGGGSIGE GGINTQKLTT DDALTYLKEV KEMFQDQRDK YDMFLEVMKD FKAQKTDTSG VISRVKELFK
0101: GHNNLIFGFN TFLPKGFEIT LDDVEAPSKK TVEFEEAISF VNKIKTRFQH NELVYKSFLE ILNMYRKDNK DITEVYNEVS TLFEDHSDLL EEFTRFLPDS
0201: LAPHTEAQLL RSQAQRYDDR GSGPPLVRRM FMEKDRRRER TVASRGDRDH SVDRSDLNDD KSMVKMHRDQ RKRVDKDNRE RRSRDLEDGE AEQDNLQHFS
0301: EKRKSSRRME GFEAYSGPAS HSEKNNLKSM YNQAFLFCEK VKERLCSQDD YQAFLKCLNM FSNGIIQRKD LQNLVSDVLG KFPDLMDEFN QFFERCESID
0401: GFQHLAGVMS KKSLGSEENL SRSVKGEEKD REHKRDVEAA KEKERSKDKY MGKSIQELDL SDCERCTPSY RLLPPDYPIP SVRHRQKSGA AVLNDHWVSV
0501: TSGSEDYSFK HMRRNQYEES LFRCEDDRFE LDMLLESVGS AAKSAEELLN IIIDKKISFE GSFRIEDHFT ALNLRCIERL YGDHGLDVTD LIRKNPAAAL
0601: PVILTRLKQK QDEWTKCREG FNVVWADVYA KNHYKSLDHR SFYFKQQDSK NLSAKALVSE VKDLKEKSQK EDDVVLSISA GYRQPIIPHL EYDYLDRAIH
0701: EDLFKLVQFS CEEICSTKEQ TGKVLKLWAN FLELMLDVAP RAKGSDSVED VVETQHQRAF TSGEANESSD AISLVSRQLK FATNGDVHAS SGVSKHGETG
0801: LLNRDSSGKE NLKDGDLANK DVATCAEKPQ KDQEIGNGAA KRSGDVDERV ATSSSSFPSG VENNNGKVGS RDSSGSRGIL SKPSEAIDKV DSIQHTQGVD
0901: IGRIIVLGNG LQSDTSKANS NYDESGGPSK IEKEEGELSP VGDSEDNFVV YEDRELKATA KTEHSVEAEG ENDEDADDED GDDASEAGED ASGTESIGDE
1001: CSQDDNGVEE EGEHDEIDGK AESEGEAEGM ESHLIEDKGL FPSSERVLLS VKPLSKHIAA AALVDEKKKD SRVFYGNDDF YVLFRLHRIL YERILSAKTY
1101: CSGSEMKLRN TKDTCSPDPY ARFMNALFSL LNGSAENSKF EDECRAIIGN QSYVLFTLEK LIYKLVKQLQ AVVADDMDNK LLQLYEYENS RRPGRVFDSV
1201: YYENARILLH EENIYRLECS SSPSRLSIQL MDNIIEKPDA YAVSMEPTFT SYLQNEFLSN SSGKKELQDI VLQRNMRGYN GLDDLAVACK AMEGVQVING
1301: LECKMSCSSY KISYVLDTED FFHRKKKQKK SNNLSLAKLS QNRIARFHKF LSASR
0101: GHNNLIFGFN TFLPKGFEIT LDDVEAPSKK TVEFEEAISF VNKIKTRFQH NELVYKSFLE ILNMYRKDNK DITEVYNEVS TLFEDHSDLL EEFTRFLPDS
0201: LAPHTEAQLL RSQAQRYDDR GSGPPLVRRM FMEKDRRRER TVASRGDRDH SVDRSDLNDD KSMVKMHRDQ RKRVDKDNRE RRSRDLEDGE AEQDNLQHFS
0301: EKRKSSRRME GFEAYSGPAS HSEKNNLKSM YNQAFLFCEK VKERLCSQDD YQAFLKCLNM FSNGIIQRKD LQNLVSDVLG KFPDLMDEFN QFFERCESID
0401: GFQHLAGVMS KKSLGSEENL SRSVKGEEKD REHKRDVEAA KEKERSKDKY MGKSIQELDL SDCERCTPSY RLLPPDYPIP SVRHRQKSGA AVLNDHWVSV
0501: TSGSEDYSFK HMRRNQYEES LFRCEDDRFE LDMLLESVGS AAKSAEELLN IIIDKKISFE GSFRIEDHFT ALNLRCIERL YGDHGLDVTD LIRKNPAAAL
0601: PVILTRLKQK QDEWTKCREG FNVVWADVYA KNHYKSLDHR SFYFKQQDSK NLSAKALVSE VKDLKEKSQK EDDVVLSISA GYRQPIIPHL EYDYLDRAIH
0701: EDLFKLVQFS CEEICSTKEQ TGKVLKLWAN FLELMLDVAP RAKGSDSVED VVETQHQRAF TSGEANESSD AISLVSRQLK FATNGDVHAS SGVSKHGETG
0801: LLNRDSSGKE NLKDGDLANK DVATCAEKPQ KDQEIGNGAA KRSGDVDERV ATSSSSFPSG VENNNGKVGS RDSSGSRGIL SKPSEAIDKV DSIQHTQGVD
0901: IGRIIVLGNG LQSDTSKANS NYDESGGPSK IEKEEGELSP VGDSEDNFVV YEDRELKATA KTEHSVEAEG ENDEDADDED GDDASEAGED ASGTESIGDE
1001: CSQDDNGVEE EGEHDEIDGK AESEGEAEGM ESHLIEDKGL FPSSERVLLS VKPLSKHIAA AALVDEKKKD SRVFYGNDDF YVLFRLHRIL YERILSAKTY
1101: CSGSEMKLRN TKDTCSPDPY ARFMNALFSL LNGSAENSKF EDECRAIIGN QSYVLFTLEK LIYKLVKQLQ AVVADDMDNK LLQLYEYENS RRPGRVFDSV
1201: YYENARILLH EENIYRLECS SSPSRLSIQL MDNIIEKPDA YAVSMEPTFT SYLQNEFLSN SSGKKELQDI VLQRNMRGYN GLDDLAVACK AMEGVQVING
1301: LECKMSCSSY KISYVLDTED FFHRKKKQKK SNNLSLAKLS QNRIARFHKF LSASR
Arabidopsis Description
SNL2Paired amphipathic helix protein Sin3-like 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LFQ3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.