Factsheet for AT3G01320.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

nucleus 3
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra040510.1-P	Field mustard	mitochondrion, nucleus	78.72	80.3
CDY28683	Canola	mitochondrion, nucleus	78.28	79.79
AT5G15020.1	Thale cress	nucleus	71.57	71.84
KRH18559	Soybean	nucleus	22.01	64.26
AT1G10250.1	Thale cress	cytosol	3.57	63.64
AT5G15025.1	Thale cress	cytosol, nucleus, peroxisome	5.39	60.66
KRG93437	Soybean	nucleus	59.77	58.49
VIT_14s0066g02330.t01	Wine grape	nucleus	58.53	57.98
AT1G70030.1	Thale cress	cytosol	6.56	56.25
KRH18561	Soybean	nucleus	36.88	56.1
Solyc02g067570.2.1	Tomato	nucleus	53.5	54.45
Solyc02g087370.1.1	Tomato	cytosol	7.58	54.17
Solyc02g087360.2.1	Tomato	nucleus	52.62	53.76
Solyc02g087380.1.1	Tomato	nucleus, plastid	5.32	53.28
PGSC0003DMT400003538	Potato	nucleus	52.04	52.62
AT1G24200.1	Thale cress	cytosol	7.36	51.53
AT1G70060.2	Thale cress	nucleus	45.7	47.29
AT5G15040.2	Thale cress	cytoskeleton, cytosol, nucleus	2.92	45.98
AT1G59890.2	Thale cress	nucleus	38.85	45.67
AT1G24190.3	Thale cress	nucleus	44.53	45.67
AT5G35610.1	Thale cress	cytosol	5.03	44.52
PGSC0003DMT400003545	Potato	cytosol, mitochondrion	15.52	41.6
AT1G10450.3	Thale cress	endoplasmic reticulum, plastid	34.99	40.92
AT1G27250.1	Thale cress	nucleus	4.08	40.88
AT1G27220.1	Thale cress	nucleus	5.25	39.13
Solyc02g087390.1.1	Tomato	cytosol	14.14	38.11
AT1G24210.1	Thale cress	cytosol	4.08	36.13
AT5G15030.1	Thale cress	endoplasmic reticulum	3.57	35.25
AT1G27240.1	Thale cress	cytosol	4.45	32.8
AT1G24230.1	Thale cress	cytosol	4.81	26.94
AT1G27280.1	Thale cress	cytosol	4.37	26.67
AT1G27260.1	Thale cress	cytosol	4.15	25.68
AT1G24250.1	Thale cress	cytosol	4.59	25.0
AT1G27270.1	Thale cress	cytosol	4.37	24.9
AT1G23810.1	Thale cress	cytosol, nucleus, peroxisome	4.3	24.48
AT1G24220.1	Thale cress	nucleus	5.17	9.54

Protein Annotations

Gene3D:1.20.1160.11	MapMan:12.3.2.4.2	EntrezGene:821265	ProteinID:AAF03494.1	ProteinID:AEE73639.1	ArrayExpress:AT3G01320
EnsemblPlantsGene:AT3G01320	RefSeq:AT3G01320	TAIR:AT3G01320	RefSeq:AT3G01320-TAIR-G	EnsemblPlants:AT3G01320.1	TAIR:AT3G01320.1
Unigene:At.41297	ncoils:Coil	GO:GO:0000118	GO:GO:0000122	GO:GO:0000785	GO:GO:0001106
GO:GO:0003674	GO:GO:0003824	GO:GO:0004407	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016043	GO:GO:0016575	GO:GO:0016787	GO:GO:0019538	GO:GO:0045892	InterPro:HDAC_interact_dom
InterPro:IPR003822	RefSeq:NP_186781.4	InterPro:PAH	InterPro:PAH_sf	PFAM:PF02671	PFAM:PF08295
PFAM:PF16879	PO:PO:0000013	PO:PO:0000037	PO:PO:0000084	PO:PO:0000230	PO:PO:0000282
PO:PO:0000293	PO:PO:0001017	PO:PO:0001054	PO:PO:0001078	PO:PO:0001081	PO:PO:0001185
PO:PO:0004507	PO:PO:0007064	PO:PO:0007095	PO:PO:0007098	PO:PO:0007103	PO:PO:0007115
PO:PO:0007123	PO:PO:0007611	PO:PO:0007616	PO:PO:0008019	PO:PO:0009005	PO:PO:0009006
PO:PO:0009009	PO:PO:0009010	PO:PO:0009025	PO:PO:0009029	PO:PO:0009030	PO:PO:0009031
PO:PO:0009032	PO:PO:0009046	PO:PO:0009047	PO:PO:0009052	PO:PO:0020030	PO:PO:0020038
PO:PO:0020100	PO:PO:0020137	PO:PO:0025022	PO:PO:0025195	PO:PO:0025281	PFscan:PS51477
PANTHER:PTHR12346	PANTHER:PTHR12346:SF21	UniProt:Q9SRH9	SMART:SM00761	Symbol:SNL1	SUPFAM:SSF47762
InterPro:Sin3_C	UniParc:UPI00005DC1F6	SEG:seg	:	:	:

Description

SNL1Paired amphipathic helix protein Sin3-like 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SRH9]

Coordinates

chr3:+:106294..113679

Molecular Weight (calculated)

156217.0 Da

IEP (calculated)

5.073

GRAVY (calculated)

-0.743

Length

1372 amino acids

Sequence
(BLAST)

0001: MKRIRDDVYA SGSQFRRPLG SSRGQLCGQS PVHGSGDTEE EEEGGSRRVS QKLTTNDALS YLREVKEMFQ DQREKYDRFL EVMKDFKAQR TDTGGVIARV
0101: KELFKGHNNL IYGFNTFLPK GYEITLIEED DALPKKTVEF EQAINFVNKI KMRFKHDEHV YKSFLEILNM YRKENKEIKE VYNEVSILFQ GHLDLLEQFT
0201: RFLPASLPSH SAAQHSRSQA QQYSDRGSDP PLLHQMQVEK ERRRERAVAL RGDYSVERYD LNDDKTMVKI QREQRKRLDK ENRARRGRDL DDREAGQDNL
0301: HHFPEKRKSS RRAEALEAYS GSASHSEKDN LKSMYKQAFV FCEKVKDRLC SQDDYQTFLK CLNIFSNGII QRKDLQNLVS DLLGKFPDLM DEFNQFFERC
0401: ESITDGFQRL AGVMSKKLFS SEEQLSRPMK VEEKESEHKP ELEAVKETEQ CKKEYMGKSI QELDLSDCEC CTPSYRLLPA DYPIPIASQR SELGAEVLND
0501: HWVSVTSGSE DYSFKHMRRN QYEESLFRCE DDRFELDMLL ESVSSAARSA ESLLNIITEK KISFSGSFRI EDHFTALNLR CIERLYGDHG LDVIDILNKN
0601: PATALPVILT RLKQKQGEWK KCRDDFDKVW ANVYAKNHYK SLDHRSFYFK QQDSKNLSAK SLLAEIKELK EKSQNDDDVL LSISAGYRQP INPNLEYEYL
0701: NRAIHEDMFK VVQFSCEELC STKEQLSKVL RLWENFLEAV LGVPPRAKGT DLVEDVVINP KTLDVNHSTS PNGEAAVSSG GDTARLASRK LKSAANGDEN
0801: SSSGTFKHGI GLLNKDSTGK ENLEDVEIAN RDGVACSAVK PQKEQETGNE AEKRFGKPIP MDISERAAIS SISIPSGAEN NHCVVGKEVL PGAHEIQAKP
0901: SDTLTDIHHD VDSIETVHST QGGDVGNSIV LANGLRSDSS KGTRNSDDPE GPSRNEKEEG ELSPNGDFED NFGVYKDHGV KSTSKPENSA EAEVEADAEV
1001: ENEDDADDVD SENASEASGT ESGGDVCSQD EDREEENGEH DEIDGKAESE GEAEGMDPHL LEGESELLPQ SERVLLSVRP LSKHVAAVLC DERTKDLQVF
1101: YGNDDFYVLF RLHQILYERI LYAKRNCSGG ELKSKNLKDT NAGDPYARFM RVLYGLLDGS AENTKFEDEC RAIIGNQSYV LFTLDKLIYR LVKQLQAIVA
1201: DEMDNKLLQL YEYEKSRKPG RVIDSVYYEN VRVLVHEENI YRLECSSLPS RLSIQLMDNI IEKPEAYAVS MDPTFASYMQ TELLSVSSGK KEEGHDIVLQ
1301: RNLTGLYDLC KAMEGVEVVN GLECKMSCSS YKIAYVLDTE DYFHRKKKKK KTEQLWQRNK VRVERFHRFL SA

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.