Factsheet for AT1G27250.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY28457	Canola	cytoskeleton, cytosol, nucleus	40.88	66.67
Bra012419.1-P	Field mustard	cytosol	40.15	63.95
CDY40291	Canola	cytoskeleton, cytosol, nucleus	40.15	63.95
AT1G27220.1	Thale cress	nucleus	47.45	35.33
AT5G15040.2	Thale cress	cytoskeleton, cytosol, nucleus	20.44	32.18
AT5G15025.1	Thale cress	cytosol, nucleus, peroxisome	27.74	31.15
KRG99215	Soybean	cytosol	28.47	28.47
AT5G15030.1	Thale cress	endoplasmic reticulum	25.55	25.18
AT5G35610.1	Thale cress	cytosol	26.28	23.23
AT1G24200.1	Thale cress	cytosol	32.12	22.45
AT1G24210.1	Thale cress	cytosol	22.63	20.0
AT1G70030.1	Thale cress	cytosol	21.9	18.75
AT1G27240.1	Thale cress	cytosol	20.44	15.05
AT1G27280.1	Thale cress	cytosol	24.09	14.67
AT1G23810.1	Thale cress	cytosol, nucleus, peroxisome	24.82	14.11
AT1G24250.1	Thale cress	cytosol	25.55	13.89
AT1G27270.1	Thale cress	cytosol	24.09	13.69
AT1G27260.1	Thale cress	cytosol	21.17	13.06
AT1G24230.1	Thale cress	cytosol	18.25	10.2
KRH45778	Soybean	cytosol	37.23	8.01
AT1G24220.1	Thale cress	nucleus	25.55	4.7
AT1G59890.2	Thale cress	nucleus	37.23	4.37
AT1G24190.3	Thale cress	nucleus	42.34	4.33
AT1G70060.2	Thale cress	nucleus	41.61	4.3
AT5G15020.1	Thale cress	nucleus	40.88	4.1
AT1G10450.3	Thale cress	endoplasmic reticulum, plastid	35.04	4.09
AT3G01320.1	Thale cress	mitochondrion, nucleus	40.88	4.08
AT1G10250.1	Thale cress	cytosol	0.0	0.0

Protein Annotations

Gene3D:1.20.1160.11	MapMan:35.1	EntrezGene:839613	ProteinID:AAF79869.1	ProteinID:AEE30798.1	ArrayExpress:AT1G27250
EnsemblPlantsGene:AT1G27250	RefSeq:AT1G27250	TAIR:AT1G27250	RefSeq:AT1G27250-TAIR-G	EnsemblPlants:AT1G27250.1	TAIR:AT1G27250.1
Unigene:At.51785	GO:GO:0000118	GO:GO:0000122	GO:GO:0000785	GO:GO:0001106	GO:GO:0003674
GO:GO:0003824	GO:GO:0004407	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005654	GO:GO:0006139	GO:GO:0006355	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0016575	GO:GO:0016787	GO:GO:0019538
InterPro:IPR003822	RefSeq:NP_174044.1	UniProt:O04572	InterPro:PAH	InterPro:PAH_sf	PFAM:PF02671
PFscan:PS51477	PANTHER:PTHR12346	PANTHER:PTHR12346:SF0	SUPFAM:SSF47762	UniParc:UPI00000A89E4	SEG:seg

Description

Paired amphipathic helix (PAH2) superfamily protein [Source:UniProtKB/TrEMBL;Acc:O04572]

Coordinates

chr1:+:9468568..9469634

Molecular Weight (calculated)

15417.4 Da

IEP (calculated)

10.010

GRAVY (calculated)

-0.422

Length

137 amino acids

Sequence
(BLAST)

001: MVGGGSKHVG EGSKPRATKD DAYAYLRAVR AKFHNDSKKY DDFVAVMTNF KARRIDRDGC IKEVEQLLKG HRDLISGFNA FLPKCLEIKN YYFGAGEDLE
101: VVYTAKRKLL ARSVTKRSSS SSSSSSVYFL FRSCEII

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.