Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT1G27260.1 | Thale cress | cytosol | 15.46 | 51.8 |
| AT1G23810.1 | Thale cress | cytosol, nucleus, peroxisome | 16.4 | 50.62 |
| AT1G27270.1 | Thale cress | cytosol | 15.86 | 48.96 |
| AT1G24230.1 | Thale cress | cytosol | 15.86 | 48.16 |
| AT1G24250.1 | Thale cress | cytosol | 15.73 | 46.43 |
| AT1G24210.1 | Thale cress | cytosol | 9.27 | 44.52 |
| AT1G27280.1 | Thale cress | cytosol | 13.17 | 43.56 |
| AT1G27240.1 | Thale cress | cytosol | 9.95 | 39.78 |
| AT5G15025.1 | Thale cress | cytosol, nucleus, peroxisome | 5.65 | 34.43 |
| AT1G70030.1 | Thale cress | cytosol | 7.26 | 33.75 |
| AT5G15040.2 | Thale cress | cytoskeleton, cytosol, nucleus | 3.76 | 32.18 |
| AT1G24200.1 | Thale cress | cytosol | 7.39 | 28.06 |
| AT5G15030.1 | Thale cress | endoplasmic reticulum | 5.11 | 27.34 |
| AT1G27250.1 | Thale cress | nucleus | 4.7 | 25.55 |
| AT5G35610.1 | Thale cress | cytosol | 5.11 | 24.52 |
| VIT_17s0000g07540.t01 | Wine grape | nucleus | 5.11 | 20.43 |
| AT1G27220.1 | Thale cress | nucleus | 4.44 | 17.93 |
| AT1G59890.2 | Thale cress | nucleus | 8.87 | 5.66 |
| AT1G10450.3 | Thale cress | endoplasmic reticulum, plastid | 8.47 | 5.37 |
| AT3G01320.1 | Thale cress | mitochondrion, nucleus | 9.54 | 5.17 |
| AT5G15020.1 | Thale cress | nucleus | 9.41 | 5.12 |
| AT1G70060.2 | Thale cress | nucleus | 8.87 | 4.98 |
| AT1G24190.3 | Thale cress | nucleus | 8.47 | 4.71 |
| AT1G10250.1 | Thale cress | cytosol | 0.0 | 0.0 |
Protein Annotations
| Gene3D:1.20.1160.11 | MapMan:35.2 | EntrezGene:839036 | ProteinID:AAC00582.1 | ProteinID:AEE30497.1 | ProteinID:ANM59952.1 |
| ArrayExpress:AT1G24220 | EnsemblPlantsGene:AT1G24220 | RefSeq:AT1G24220 | TAIR:AT1G24220 | RefSeq:AT1G24220-TAIR-G | EnsemblPlants:AT1G24220.1 |
| TAIR:AT1G24220.1 | Unigene:At.51749 | GO:GO:0000118 | GO:GO:0000122 | GO:GO:0000785 | GO:GO:0001106 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004407 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005654 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0006464 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016575 | GO:GO:0016787 |
| GO:GO:0019538 | InterPro:IPR003822 | RefSeq:NP_001319074.1 | RefSeq:NP_173832.1 | UniProt:O48689 | InterPro:PAH |
| InterPro:PAH_sf | PFAM:PF02671 | PO:PO:0000005 | PFscan:PS51477 | PANTHER:PTHR12346 | PANTHER:PTHR12346:SF0 |
| SUPFAM:SSF47762 | UniParc:UPI000009EBD0 | SEG:seg | : | : | : |
Description
F3I6.15 protein [Source:UniProtKB/TrEMBL;Acc:O48689]
Coordinates
chr1:-:8578658..8582767
Molecular Weight (calculated)
85709.5 Da
IEP (calculated)
10.452
GRAVY (calculated)
-0.719
Length
744 amino acids
Sequence
(BLAST)
(BLAST)
001: MVGRSVSQEP TMADAVSYIE SVKEEFHDEP AKFDEFRMRL NEVRDDRVEK DRITARINEL ISGNPKLHLG SKVFFPEAEI TIPPKVEQRH ESVDAKKKRA
101: NRENHRKKKL KCLDSLVFPP MTKKIDEGKK SVKKVHKKFL VLSKVDRTIP PDANKELRKS RTMFGKSVPL EKTLDDARSY IDSVKEAFHD EPAKYAEFLK
201: LLNDYKARRL DADSVIARVD ELTKDHRNLL LGLRAILLPA AKSTIPHKAK GKRTARPEAS RTIPVKLKIT IIPPKARRTI PSEADKPTHT DELNFMNKLP
301: PKRRRTIPSE AEKPTHTDEL NFMNKLPTKR RRTIPSEAEK PTHTDELNFM NKLPTKARRT IPSEAEKPTH TDELNFMNKL KTRFQRIDTH VVGSFHSIMT
401: MYKEGKKSRK EVHEEVCDLL YYHEDLRADF TRIFPKLGSF RINISTISVH LFLEIFEVVY TVKRKLLARS VTTRPYSSSF TVSLKLTMDD DYRLEIASTI
501: RETVTYIADV KEAFLDEPAK FHEFLRLMND VCDHKIEEAN GSARMAEIIK GHPRLLLVLS VFFPKSKQYE EAARSISSEA SRTIPPKATI PPKSSRTISP
601: KANRTIPPKS KKTFPREAKR TIPREANRNR IMPSEAKKTI HPEDKRTTRP VDHLAFFIPK AKRTIPPAES NKNKKNARFQ GYGSHVVNSV LQILKMYSEG
701: NKSKDEAYQE VVSLLQNHVD LVMEFGDYFS GISAYNRFLR DGKE
101: NRENHRKKKL KCLDSLVFPP MTKKIDEGKK SVKKVHKKFL VLSKVDRTIP PDANKELRKS RTMFGKSVPL EKTLDDARSY IDSVKEAFHD EPAKYAEFLK
201: LLNDYKARRL DADSVIARVD ELTKDHRNLL LGLRAILLPA AKSTIPHKAK GKRTARPEAS RTIPVKLKIT IIPPKARRTI PSEADKPTHT DELNFMNKLP
301: PKRRRTIPSE AEKPTHTDEL NFMNKLPTKR RRTIPSEAEK PTHTDELNFM NKLPTKARRT IPSEAEKPTH TDELNFMNKL KTRFQRIDTH VVGSFHSIMT
401: MYKEGKKSRK EVHEEVCDLL YYHEDLRADF TRIFPKLGSF RINISTISVH LFLEIFEVVY TVKRKLLARS VTTRPYSSSF TVSLKLTMDD DYRLEIASTI
501: RETVTYIADV KEAFLDEPAK FHEFLRLMND VCDHKIEEAN GSARMAEIIK GHPRLLLVLS VFFPKSKQYE EAARSISSEA SRTIPPKATI PPKSSRTISP
601: KANRTIPPKS KKTFPREAKR TIPREANRNR IMPSEAKKTI HPEDKRTTRP VDHLAFFIPK AKRTIPPAES NKNKKNARFQ GYGSHVVNSV LQILKMYSEG
701: NKSKDEAYQE VVSLLQNHVD LVMEFGDYFS GISAYNRFLR DGKE
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.