Factsheet for AT1G10450.3

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, plastid

Predictor Summary:

plastid 3
extracellular 1
endoplasmic reticulum 3
vacuole 1
plasma membrane 1
golgi 1
nucleus 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, plastid
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT1G10250.1	Thale cress	cytosol	6.14	93.51
Bra019933.1-P	Field mustard	nucleus	64.54	74.51
CDX93425	Canola	nucleus	64.36	74.31
CDY37976	Canola	nucleus	62.06	73.68
AT1G59890.2	Thale cress	nucleus	61.64	61.95
CDY06480	Canola	cytosol	11.17	55.51
CDY08302	Canola	cytosol	11.34	51.95
CDY08301	Canola	cytosol	11.94	50.36
Bra037066.1-P	Field mustard	nucleus	11.76	49.64
Bra037065.1-P	Field mustard	nucleus	10.06	48.96
AT1G70030.1	Thale cress	cytosol	6.48	47.5
AT1G24200.1	Thale cress	cytosol	7.5	44.9
AT5G15025.1	Thale cress	cytosol, nucleus, peroxisome	4.52	43.44
KRG99216	Soybean	nucleus	48.0	40.77
AT5G15040.2	Thale cress	cytoskeleton, cytosol, nucleus	2.98	40.23
KRH45772	Soybean	nucleus	47.83	40.22
AT1G70060.2	Thale cress	nucleus	43.65	38.61
Solyc05g006540.2.1	Tomato	nucleus	44.59	38.46
PGSC0003DMT400058222	Potato	nucleus	44.42	38.17
AT1G24190.3	Thale cress	nucleus	43.48	38.12
AT5G35610.1	Thale cress	cytosol	5.03	38.06
AT5G15020.1	Thale cress	nucleus	41.77	35.84
AT1G27250.1	Thale cress	nucleus	4.09	35.04
AT3G01320.1	Thale cress	mitochondrion, nucleus	40.92	34.99
AT1G27220.1	Thale cress	nucleus	5.29	33.7
AT1G24210.1	Thale cress	cytosol	4.43	33.55
AT5G15030.1	Thale cress	endoplasmic reticulum	3.84	32.37
KRH45776	Soybean	nucleus	24.13	30.69
AT1G27240.1	Thale cress	cytosol	4.52	28.49
AT1G27270.1	Thale cress	cytosol	4.77	23.24
AT1G27260.1	Thale cress	cytosol	4.35	22.97
AT1G27280.1	Thale cress	cytosol	4.35	22.67
AT1G24230.1	Thale cress	cytosol	4.69	22.45
AT1G24250.1	Thale cress	cytosol	4.77	22.22
AT1G23810.1	Thale cress	cytosol, nucleus, peroxisome	4.43	21.58
AT1G24220.1	Thale cress	nucleus	5.37	8.47

Protein Annotations

Gene3D:1.20.1160.11	MapMan:12.3.2.4.2	EntrezGene:837584	ProteinID:AAD39565.1	ProteinID:AEE28580.1	ProteinID:ANM59404.1
ArrayExpress:AT1G10450	EnsemblPlantsGene:AT1G10450	RefSeq:AT1G10450	TAIR:AT1G10450	RefSeq:AT1G10450-TAIR-G	EnsemblPlants:AT1G10450.3
Unigene:At.42179	GO:GO:0000118	GO:GO:0000122	GO:GO:0000785	GO:GO:0001106	GO:GO:0003674
GO:GO:0003824	GO:GO:0004407	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005654	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0016575	GO:GO:0016787
GO:GO:0019538	InterPro:HDAC_interact_dom	InterPro:IPR003822	RefSeq:NP_001321764.1	RefSeq:NP_001321765.1	RefSeq:NP_172515.2
InterPro:PAH	InterPro:PAH_sf	PFAM:PF02671	PFAM:PF08295	PFAM:PF16879	PFscan:PS51477
PANTHER:PTHR12346	PANTHER:PTHR12346:SF21	UniProt:Q9XIK6	SMART:SM00761	Symbol:SNL6	SUPFAM:SSF47762
InterPro:Sin3_C	UniParc:UPI0000162D07	SEG:seg	:	:	:

Description

SNL6Paired amphipathic helix protein Sin3-like 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9XIK6]

Coordinates

chr1:+:3432160..3437979

Molecular Weight (calculated)

134424.0 Da

IEP (calculated)

7.448

GRAVY (calculated)

-0.693

Length

1173 amino acids

Sequence
(BLAST)

0001: MRDLLLGTTI PSYFSWLGLF PRFLVWFGFL KASFFCSSRN QSAGESGRRL KMKRAREDVH TDTQKRKPEV SSRGETNKLP RTIDALTYLK AVKDIFHDNK
0101: EKYESFLELM KEFKAQTIDT NGVIERIKVL FKGYRDLLLG FNTFLPKGYK ITLLPEEEKP KIRVDFKDAI GFVTKIKTRF GDDEHAYKRF LDILNLYRKE
0201: KKSISEVYEE VTMLFKGHED LLMEFVNFLP NCPESAPSTK NAVPRHKGTA TTAMHSDKKR KQRCKLEDYS GHSDQREDGD ENLVTCSADS PVGEGQPGYF
0301: RDYENREDTE TDTADRTEKS AASGSQDIGN HKSTTKYVGT PINELDLSEC TQCTPSYRLL PKDYAVEIPS YRNTLGKKTL NDHLVSVTSG SEDYSFSHMR
0401: KNQYEESLFR CEDDRYEMDM LLGSVSSAIK QVEILLEKMN NNTISVDSTI CIEKHLSAMN LRCIERLYGD NGLDVMDLLK KNMHSALPVI LTRLKQKQEE
0501: WARCHSDFQK VWAEVYAKNH HKSLDHRSFY FKQQDSKNLS TKCLVAEVKD ISEKKHQEDL LQAIAVRVMP LFTPDLEFNY CDTQIHEDLY LLIKYYCEEI
0601: CATEQSDKVM KLWITFLEPI FGILSRSQDN LALEDVSKLK NNRELQDACL AVKETASGSN RKHPISPKRL SKDNTKMQGS SSREDVSANI KVKTAQPDKL
0701: QDDAAMTNEV IQSSKFVSPK NDQIMEDEGN HMVNAASVEK HELEEGELSP TASREQSNFE VNGQNAFKPL QKVTDNVRSN KDKQSCDKKG AKNKTRAEDD
0801: KQENCHKLSE NNKTASEMLV SGTKVSCHEE NNRVMNCNGR GSVAGEMANG NQGEDGSFAF SERFLQTVKP VAKHLSWPLQ ASETCSQNDS QVFYGNDSYY
0901: VLFRLHQMLY ERIQTAKKHS EKKWKAADNT TPDSYPRFMD ALYNLLDGSI DNTKFEDECR AIFGAQSYVL FTLDKLVQKF VKHLHSVASD ETDTKLLQLH
1001: AYENYRKPGK FFDLVYHENA CALLHEANIY RIRYSSEGTR LSIQLMNSGN NQLEVMGVAM EPAFADYLQN KCLKSVNDEE NHGLFLNRNK KKFTSLDESR
1101: GMPVAMERLN IINEMECRMA CSSSKVKYVA NTSDLLYRSK QGKPNSRVSE ILKQRRISRF HIMLNCRLCA LPL

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.