Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra006276.1-P | Field mustard | nucleus | 83.91 | 85.22 |
| CDX78604 | Canola | nucleus | 83.98 | 85.04 |
| CDX70587 | Canola | nucleus | 84.13 | 84.87 |
| CDX85568 | Canola | nucleus | 80.83 | 82.71 |
| Bra023501.1-P | Field mustard | nucleus | 80.76 | 82.63 |
| CDX91007 | Canola | nucleus | 79.96 | 82.62 |
| AT3G01320.1 | Thale cress | mitochondrion, nucleus | 71.84 | 71.57 |
| KRH18559 | Soybean | nucleus | 22.82 | 66.38 |
| AT1G10250.1 | Thale cress | cytosol | 3.51 | 62.34 |
| AT5G15025.1 | Thale cress | cytosol, nucleus, peroxisome | 5.49 | 61.48 |
| KRG93437 | Soybean | nucleus | 60.86 | 59.34 |
| VIT_14s0066g02330.t01 | Wine grape | nucleus | 59.11 | 58.34 |
| AT1G70030.1 | Thale cress | cytosol | 6.66 | 56.88 |
| KRH18561 | Soybean | nucleus | 37.45 | 56.76 |
| Solyc02g067570.2.1 | Tomato | nucleus | 53.47 | 54.23 |
| Solyc02g087360.2.1 | Tomato | nucleus | 53.04 | 53.98 |
| PGSC0003DMT400003538 | Potato | nucleus | 53.26 | 53.65 |
| Solyc02g087380.1.1 | Tomato | nucleus, plastid | 5.34 | 53.28 |
| Solyc02g087370.1.1 | Tomato | cytosol | 7.46 | 53.12 |
| AT1G24200.1 | Thale cress | cytosol | 7.61 | 53.06 |
| AT1G70060.2 | Thale cress | nucleus | 45.79 | 47.21 |
| AT5G15040.2 | Thale cress | cytoskeleton, cytosol, nucleus | 3.0 | 47.13 |
| AT1G24190.3 | Thale cress | nucleus | 44.99 | 45.96 |
| AT1G59890.2 | Thale cress | nucleus | 38.55 | 45.16 |
| AT5G35610.1 | Thale cress | cytosol | 5.05 | 44.52 |
| AT1G10450.3 | Thale cress | endoplasmic reticulum, plastid | 35.84 | 41.77 |
| PGSC0003DMT400003545 | Potato | cytosol, mitochondrion | 15.58 | 41.6 |
| AT1G27220.1 | Thale cress | nucleus | 5.56 | 41.3 |
| AT1G27250.1 | Thale cress | nucleus | 4.1 | 40.88 |
| Solyc02g087390.1.1 | Tomato | cytosol | 14.34 | 38.51 |
| AT5G15030.1 | Thale cress | endoplasmic reticulum | 3.58 | 35.25 |
| AT1G24210.1 | Thale cress | cytosol | 3.8 | 33.55 |
| AT1G27240.1 | Thale cress | cytosol | 3.95 | 29.03 |
| AT1G27280.1 | Thale cress | cytosol | 4.54 | 27.56 |
| AT1G24250.1 | Thale cress | cytosol | 4.68 | 25.4 |
| AT1G27260.1 | Thale cress | cytosol | 4.1 | 25.23 |
| AT1G24230.1 | Thale cress | cytosol | 4.46 | 24.9 |
| AT1G23810.1 | Thale cress | cytosol, nucleus, peroxisome | 4.39 | 24.9 |
| AT1G27270.1 | Thale cress | cytosol | 4.24 | 24.07 |
| AT1G24220.1 | Thale cress | nucleus | 5.12 | 9.41 |
Protein Annotations
| Gene3D:1.20.1160.11 | MapMan:12.3.2.4.2 | EntrezGene:831354 | ProteinID:AED92105.1 | EMBL:AK118953 | ArrayExpress:AT5G15020 |
| EnsemblPlantsGene:AT5G15020 | RefSeq:AT5G15020 | TAIR:AT5G15020 | RefSeq:AT5G15020-TAIR-G | EnsemblPlants:AT5G15020.1 | TAIR:AT5G15020.1 |
| Unigene:At.43354 | ProteinID:CAC01821.1 | GO:GO:0000118 | GO:GO:0000122 | GO:GO:0000785 | GO:GO:0001106 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004407 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005654 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0016043 | GO:GO:0016575 | GO:GO:0016787 | GO:GO:0019538 | InterPro:HDAC_interact_dom | InterPro:IPR003822 |
| RefSeq:NP_197006.2 | InterPro:PAH | InterPro:PAH_sf | PFAM:PF02671 | PFAM:PF08295 | PFAM:PF16879 |
| PO:PO:0000005 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 |
| PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PO:PO:0025281 | PFscan:PS51477 | PANTHER:PTHR12346 | PANTHER:PTHR12346:SF21 | UniProt:Q9LFQ3 |
| SMART:SM00761 | Symbol:SNL2 | SUPFAM:SSF47762 | InterPro:Sin3_C | UniParc:UPI0001505843 | SEG:seg |
Description
SNL2Paired amphipathic helix protein Sin3-like 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LFQ3]
Coordinates
chr5:-:4859127..4866031
Molecular Weight (calculated)
155127.0 Da
IEP (calculated)
5.044
GRAVY (calculated)
-0.749
Length
1367 amino acids
Sequence
(BLAST)
(BLAST)
0001: MKRIRDDIYA TGSQFKRPLG SSRGESYEQS PITGGGSIGE GGINTQKLTT DDALTYLKEV KEMFQDQRDK YDMFLEVMKD FKAQKTDTSG VISRVKELFK
0101: GHNNLIFGFN TFLPKGFEIT LDDVEAPSKK TVEFEEAISF VNKIKTRFQH NELVYKSFLE ILNMYRKDNK DITEVYNEVS TLFEDHSDLL EEFTRFLPDS
0201: LAPHTEAQLL RSQAQRYDDR GSGPPLVRRM FMEKDRRRER TVASRGDRDH SVDRSDLNDD KSMVKMHRDQ RKRVDKDNRE RRSRDLEDGE AEQDNLQHFS
0301: EKRKSSRRME GFEAYSGPAS HSEKNNLKSM YNQAFLFCEK VKERLCSQDD YQAFLKCLNM FSNGIIQRKD LQNLVSDVLG KFPDLMDEFN QFFERCESID
0401: GFQHLAGVMS KKSLGSEENL SRSVKGEEKD REHKRDVEAA KEKERSKDKY MGKSIQELDL SDCERCTPSY RLLPPDYPIP SVRHRQKSGA AVLNDHWVSV
0501: TSGSEDYSFK HMRRNQYEES LFRCEDDRFE LDMLLESVGS AAKSAEELLN IIIDKKISFE GSFRIEDHFT ALNLRCIERL YGDHGLDVTD LIRKNPAAAL
0601: PVILTRLKQK QDEWTKCREG FNVVWADVYA KNHYKSLDHR SFYFKQQDSK NLSAKALVSE VKDLKEKSQK EDDVVLSISA GYRQPIIPHL EYDYLDRAIH
0701: EDLFKLVQFS CEEICSTKEQ TGKVLKLWAN FLELMLDVAP RAKGSDSVED VVETQHQRAF TSGEANESSD AISLVSRQLK FATNGDVHAS SGVSKHGETG
0801: LLNRDSSGKE NLKDGDLANK DVATCAEKPQ KDQEIGNGAA KRSGDVDERV ATSSSSFPSG VENNNGKVGS RDSSGSRGIL SKPSEAIDKV DSIQHTQGVD
0901: IGRIIVLGNG LQSDTSKANS NYDESGGPSK IEKEEGELSP VGDSEDNFVV YEDRELKATA KTEHSVEAEG ENDEDADDED GDDASEAGED ASGTESIGDE
1001: CSQDDNGVEE EGEHDEIDGK AESEGEAEGM ESHLIEDKGL FPSSERVLLS VKPLSKHIAA AALVDEKKKD SRVFYGNDDF YVLFRLHRVS AIDSYDLLSH
1101: ILYERILSAK TYCSGSEMKL RNTKDTCSPD PYARFMNALF SLLNGSAENS KFEDECRAII GNQSYVLFTL EKLIYKLVKQ LQAVVADDMD NKLLQLYEYE
1201: NSRRPGRVFD SVYYENARIL LHEENIYRLE CSSSPSRLSI QLMDNIIEKP DAYAVSMEPT FTSYLQNEFL SNSSGKKELQ DIVLQRNMRG YNGLDDLAVA
1301: CKAMEGVQVI NGLECKMSCS SYKISYVLDT EDFFHRKKKQ KKSNNLSLAK LSQNRIARFH KFLSASR
0101: GHNNLIFGFN TFLPKGFEIT LDDVEAPSKK TVEFEEAISF VNKIKTRFQH NELVYKSFLE ILNMYRKDNK DITEVYNEVS TLFEDHSDLL EEFTRFLPDS
0201: LAPHTEAQLL RSQAQRYDDR GSGPPLVRRM FMEKDRRRER TVASRGDRDH SVDRSDLNDD KSMVKMHRDQ RKRVDKDNRE RRSRDLEDGE AEQDNLQHFS
0301: EKRKSSRRME GFEAYSGPAS HSEKNNLKSM YNQAFLFCEK VKERLCSQDD YQAFLKCLNM FSNGIIQRKD LQNLVSDVLG KFPDLMDEFN QFFERCESID
0401: GFQHLAGVMS KKSLGSEENL SRSVKGEEKD REHKRDVEAA KEKERSKDKY MGKSIQELDL SDCERCTPSY RLLPPDYPIP SVRHRQKSGA AVLNDHWVSV
0501: TSGSEDYSFK HMRRNQYEES LFRCEDDRFE LDMLLESVGS AAKSAEELLN IIIDKKISFE GSFRIEDHFT ALNLRCIERL YGDHGLDVTD LIRKNPAAAL
0601: PVILTRLKQK QDEWTKCREG FNVVWADVYA KNHYKSLDHR SFYFKQQDSK NLSAKALVSE VKDLKEKSQK EDDVVLSISA GYRQPIIPHL EYDYLDRAIH
0701: EDLFKLVQFS CEEICSTKEQ TGKVLKLWAN FLELMLDVAP RAKGSDSVED VVETQHQRAF TSGEANESSD AISLVSRQLK FATNGDVHAS SGVSKHGETG
0801: LLNRDSSGKE NLKDGDLANK DVATCAEKPQ KDQEIGNGAA KRSGDVDERV ATSSSSFPSG VENNNGKVGS RDSSGSRGIL SKPSEAIDKV DSIQHTQGVD
0901: IGRIIVLGNG LQSDTSKANS NYDESGGPSK IEKEEGELSP VGDSEDNFVV YEDRELKATA KTEHSVEAEG ENDEDADDED GDDASEAGED ASGTESIGDE
1001: CSQDDNGVEE EGEHDEIDGK AESEGEAEGM ESHLIEDKGL FPSSERVLLS VKPLSKHIAA AALVDEKKKD SRVFYGNDDF YVLFRLHRVS AIDSYDLLSH
1101: ILYERILSAK TYCSGSEMKL RNTKDTCSPD PYARFMNALF SLLNGSAENS KFEDECRAII GNQSYVLFTL EKLIYKLVKQ LQAVVADDMD NKLLQLYEYE
1201: NSRRPGRVFD SVYYENARIL LHEENIYRLE CSSSPSRLSI QLMDNIIEKP DAYAVSMEPT FTSYLQNEFL SNSSGKKELQ DIVLQRNMRG YNGLDDLAVA
1301: CKAMEGVQVI NGLECKMSCS SYKISYVLDT EDFFHRKKKQ KKSNNLSLAK LSQNRIARFH KFLSASR
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.