Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH45772 | Soybean | nucleus | 93.63 | 92.69 |
| KRH69432 | Soybean | nucleus | 76.18 | 73.57 |
| KRH74716 | Soybean | nucleus | 69.95 | 73.46 |
| KRH45776 | Soybean | nucleus | 42.14 | 63.12 |
| Solyc05g006540.2.1 | Tomato | nucleus | 57.78 | 58.68 |
| PGSC0003DMT400058222 | Potato | nucleus | 57.78 | 58.46 |
| CDY31594 | Canola | nucleus | 16.73 | 58.19 |
| KRH18561 | Soybean | nucleus | 37.65 | 57.65 |
| KRG99215 | Soybean | cytosol | 5.5 | 55.47 |
| CDY30912 | Canola | nucleus | 42.14 | 55.43 |
| KRG93437 | Soybean | nucleus | 55.39 | 54.56 |
| Bra035418.1-P | Field mustard | nucleus | 43.66 | 54.47 |
| CDY24499 | Canola | nucleus | 43.66 | 54.37 |
| AT1G59890.2 | Thale cress | nucleus | 45.76 | 54.16 |
| CDY37976 | Canola | nucleus | 38.52 | 53.85 |
| Bra017891.1-P | Field mustard | nucleus | 38.09 | 53.67 |
| Bra019933.1-P | Field mustard | nucleus | 39.1 | 53.15 |
| CDX93425 | Canola | nucleus | 39.03 | 53.05 |
| Bra027831.1-P | Field mustard | nucleus | 28.53 | 52.81 |
| CDY33612 | Canola | nucleus | 43.59 | 52.21 |
| CDY45153 | Canola | nucleus | 35.99 | 51.34 |
| KRH18559 | Soybean | nucleus | 17.45 | 51.28 |
| CDY31595 | Canola | nucleus | 25.34 | 50.58 |
| CDY06480 | Canola | cytosol | 8.62 | 50.42 |
| CDY08302 | Canola | cytosol | 9.05 | 48.83 |
| AT1G10450.3 | Thale cress | endoplasmic reticulum, plastid | 40.77 | 48.0 |
| Bra037065.1-P | Field mustard | nucleus | 8.33 | 47.72 |
| KRH45778 | Soybean | cytosol | 21.94 | 47.57 |
| CDY08301 | Canola | cytosol | 9.49 | 47.12 |
| Bra037066.1-P | Field mustard | nucleus | 9.41 | 46.76 |
| KRH18551 | Soybean | cytosol, nucleus, peroxisome | 5.65 | 36.11 |
Protein Annotations
| Gene3D:1.20.1160.11 | EntrezGene:100813398 | MapMan:12.3.2.4.2 | EMBL:ACUP02011006 | ncoils:Coil | EnsemblPlantsGene:GLYMA_18G130400 |
| GO:GO:0000118 | GO:GO:0000122 | GO:GO:0000785 | GO:GO:0001106 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0004407 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005654 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016575 | GO:GO:0016787 | GO:GO:0019538 | InterPro:HDAC_interact_dom |
| InterPro:IPR003822 | UniProt:K7MRS2 | EnsemblPlants:KRG99216 | ProteinID:KRG99216 | ProteinID:KRG99216.1 | ProteinID:KRG99217.1 |
| InterPro:PAH | InterPro:PAH_sf | PFAM:PF02671 | PFAM:PF08295 | PFAM:PF16879 | PFscan:PS51477 |
| PANTHER:PTHR12346 | PANTHER:PTHR12346:SF21 | SMART:SM00761 | SUPFAM:SSF47762 | InterPro:Sin3_C | UniParc:UPI000296F98D |
| SEG:seg | : | : | : | : | : |
Description
hypothetical protein
Coordinates
chr18:+:18115603..18128112
Molecular Weight (calculated)
156739.0 Da
IEP (calculated)
5.314
GRAVY (calculated)
-0.800
Length
1381 amino acids
Sequence
(BLAST)
(BLAST)
0001: MKRTRDDVYM SSQLKRPMVS SRGEPSGQPQ MTSGGGQKLT TNDALAYLRA VKDIFQDKRE KYDDFLEVMK DFKAQRIDTS GVIARVKELF KGHKDLILGF
0101: NTFLPKGYEI TLPLEDEQPP QKKPVEFAEA INFVGKIKAR FYANDRVYKS FLDILNMYRM EAKSIAEVYK EVAALFQDHV DLLREFTHFL PDTSGTANNS
0201: LLHDRTTIRQ MHVEKKERNI ASHGDRDLGA DHPDPELDRC LIRADKDQRR RDEKEKDSRD YDHDGISHKR KSGCRAEDSG AEPLHDTDEN FGMHRISYAC
0301: EDKSSLKSMY SPVLGYLDKV KDKLRNPEDY QEFLKCLNIY SKEIIARHEL QSLVGNLLGK HADLMEGFDE FLAQCEKNEG FLAGLLKKRH GPKPVKVEDR
0401: DQDRDRDDGM KERDRECRER DKATANKDVS VPKTSLYTSK DKYAAKPISE LDLSNCEQCT PSYRLLPKNY PIPPASQRTE LGAEVLNDHW VSVTSGSEDY
0501: SFKHMRKNQY EESLFRCEDD RFELDMLLES VNVATKRVEE LLEKVNANII KGDSPICIEE HLTALNLRCI ERLYGDHGLD VMDVLKKNAS LALPVILTRL
0601: KQKQDEWARC RADFNKVWAE IYAKNYHKSL DHRSFYFKQQ DTKSLSTKVL LAEIKEISEK KRKEDDVLLA IAAGNRQPFI PHLEFVYPDP EIHEDLYQLI
0701: KYSCGEMCTT EQLDKAMKIW TTFLEPMLGV PSRPQGPEDT EDVVKANKNN SSKSGTAIDD GDSSPVTNPK NLNTKRNEDE NFPSEQINSC KQWQTNGDNK
0801: VKEDNYLDSE CPAHKIETLG STTQQDKVHI NASMPDEVSR ANKQDHSIER LVNGNVSPSS GMEQISRITN VDNASGLAAT PSRPGNISGA GGLGLPSLEG
0901: ADSTRPVTST NGAIIEDTKV HRYREDAGPF KSEREEGELS PNGDFEEDEF AVYGHAGLEA VHKGKNGTIC RQYQNRHGEE VRGEAGGEND ADDEVEESPH
1001: RSMEDSENAS ENGDVSGTES ADGEECSREH EEDGDHEHDN KAESEGEAEG MADANDVEGD GASLPYSECF LVTVKPLAKH VPPVLHDKER TARVFYGNDS
1101: FYVLFRLHQT LYERIQSAKV NSSSAEKKWR ASNDTGSSDQ YGRFMDALYN LLDGSSDSTK FEDDCRAIIG TQSYVLFTLD KLIYKLVKQL QAVATEEIDN
1201: KLLQLYAYEN SRKPGRFVDL VYHENARVLL HDENIYRIEC SPAPTQLSSI QLMDYGYDKP ELTAVSMDPN FSAYLHNDFL SVVPDKMEKS GIYLKRNKRK
1301: YAISDEYSSQ TLDGLEIING LECKIVCNSS KVSYVLDTED FLHRTRRKRR TLHQSSSCHE QAKSSIICSS RAQRFCKLFS I
0101: NTFLPKGYEI TLPLEDEQPP QKKPVEFAEA INFVGKIKAR FYANDRVYKS FLDILNMYRM EAKSIAEVYK EVAALFQDHV DLLREFTHFL PDTSGTANNS
0201: LLHDRTTIRQ MHVEKKERNI ASHGDRDLGA DHPDPELDRC LIRADKDQRR RDEKEKDSRD YDHDGISHKR KSGCRAEDSG AEPLHDTDEN FGMHRISYAC
0301: EDKSSLKSMY SPVLGYLDKV KDKLRNPEDY QEFLKCLNIY SKEIIARHEL QSLVGNLLGK HADLMEGFDE FLAQCEKNEG FLAGLLKKRH GPKPVKVEDR
0401: DQDRDRDDGM KERDRECRER DKATANKDVS VPKTSLYTSK DKYAAKPISE LDLSNCEQCT PSYRLLPKNY PIPPASQRTE LGAEVLNDHW VSVTSGSEDY
0501: SFKHMRKNQY EESLFRCEDD RFELDMLLES VNVATKRVEE LLEKVNANII KGDSPICIEE HLTALNLRCI ERLYGDHGLD VMDVLKKNAS LALPVILTRL
0601: KQKQDEWARC RADFNKVWAE IYAKNYHKSL DHRSFYFKQQ DTKSLSTKVL LAEIKEISEK KRKEDDVLLA IAAGNRQPFI PHLEFVYPDP EIHEDLYQLI
0701: KYSCGEMCTT EQLDKAMKIW TTFLEPMLGV PSRPQGPEDT EDVVKANKNN SSKSGTAIDD GDSSPVTNPK NLNTKRNEDE NFPSEQINSC KQWQTNGDNK
0801: VKEDNYLDSE CPAHKIETLG STTQQDKVHI NASMPDEVSR ANKQDHSIER LVNGNVSPSS GMEQISRITN VDNASGLAAT PSRPGNISGA GGLGLPSLEG
0901: ADSTRPVTST NGAIIEDTKV HRYREDAGPF KSEREEGELS PNGDFEEDEF AVYGHAGLEA VHKGKNGTIC RQYQNRHGEE VRGEAGGEND ADDEVEESPH
1001: RSMEDSENAS ENGDVSGTES ADGEECSREH EEDGDHEHDN KAESEGEAEG MADANDVEGD GASLPYSECF LVTVKPLAKH VPPVLHDKER TARVFYGNDS
1101: FYVLFRLHQT LYERIQSAKV NSSSAEKKWR ASNDTGSSDQ YGRFMDALYN LLDGSSDSTK FEDDCRAIIG TQSYVLFTLD KLIYKLVKQL QAVATEEIDN
1201: KLLQLYAYEN SRKPGRFVDL VYHENARVLL HDENIYRIEC SPAPTQLSSI QLMDYGYDKP ELTAVSMDPN FSAYLHNDFL SVVPDKMEKS GIYLKRNKRK
1301: YAISDEYSSQ TLDGLEIING LECKIVCNSS KVSYVLDTED FLHRTRRKRR TLHQSSSCHE QAKSSIICSS RAQRFCKLFS I
0001: MVGGSSAQKL TTNDALAYLK AVKDKFQDKR DKYDEFLEVM KDFKAQRVDT TGVILRVKEL FKGNRELILG FNTFLPKGFE ITLRPEDDQP AAPKKPVEFE
0101: EAISFVNKIK TRFQGDDRVY KSFLDILNMY RKENKSITEV YHEVAILFRD HHDLLGEFTH FLPDTSATAS TNDSVKVPVR DRGIKSLPTM RQIDLDKKDR
0201: IITSHPNRAL KTENMDVDHE RSLLKDSKEE VRRIDKKNDF MDDRDRKDYR GLDHDSHKEH FFNSKKKLIR KDDDSAEMSD QAREGDKFSG AIPSSSTYDE
0301: KGHSQELAFV DRVKAKLDTA DNQEFLRCLN LYSKEIISQP ELQSLVSDLI GVYPDLMDAF KVFLAQCDKN DGLLSGIVSK KSLWSEGKCP QPTKSLDKDT
0401: DREREKIERY RERDREKERL EKVAASQKWA KPISELDLSN CEQCTPSYRR LPKNYPIPIA SQKMEIGSQV LNDHWVSVTS GSEDYSFKHM RKNQYEESLF
0501: KCEDDRFELD MLLESVISAT NRVEELLAKI NSNELKTDTP ICIEDHLTAL NLRCIERLYS DHGLDVLDLL KKNAYLALPV ILTRLKQKQE EWARCRTEFN
0601: KVWADIYTKN YHRSLDHRSF YFKQQDSKNL STKALLAEIK EISEKKRGED DALLALAAGN RRTISSNMSF DYPDPDLHED LYQLIKYSCG EMCSTEQLDK
0701: VMKVWTEFLE PIFGVPSRPQ GAEDREDAVK STNHDREDQE DAVSPQNGAS IANSMRSNGP RKVNESNQVR QASELDKDVT SSKTSDALLS CDNTQNDKMP
0801: KNLTTPDERA ETKQAVSIER AHNSNALPLD GLLPQRNGKI SSLSVAGLSN SNPKPALTSG TEELKPNYVN GPRVEIGDNP VIPNGTVAEW FAGEAKVERE
0901: EGELSPTGDF EEDNYAVHGE NDMEALSKSK ENDATADDAS APRSSDGSGN TSHNGDVSGT DSGDGEDCYR EDDIDHNKVE SEGEAEEGMS DGHDDTEGDM
1001: PVLSISVKNL LHVKPLAKYV PPALYDKDND DSRKNSQVFY GNDSFYVLFR LHQILYDRIL SAKINSSSPD RKWKTSNPTN PADSYARIMD ALYNLLDGTS
1101: DNSKFEDDCR AIIGTQSYVL FTLDKLIYKL IKHLQAVAAD EMDNKLQQLY AYEKSRKPEK FLDAVYYENA LVLLPDEDIY RIECEQSTPS KLSIQLLDYG
1201: HDKPDVTSIS MDPTFAAYLH NVFLSYQPNA KENPRIYLKR NKRKNGGDDE LCTTDEVKII NGLECKITCS SSKVSYVLDT EDVLHRAKRR KLLNQSGLPL
1301: AHDSVCSGSL IRQRRTQRYQ KLLTGQ
0101: EAISFVNKIK TRFQGDDRVY KSFLDILNMY RKENKSITEV YHEVAILFRD HHDLLGEFTH FLPDTSATAS TNDSVKVPVR DRGIKSLPTM RQIDLDKKDR
0201: IITSHPNRAL KTENMDVDHE RSLLKDSKEE VRRIDKKNDF MDDRDRKDYR GLDHDSHKEH FFNSKKKLIR KDDDSAEMSD QAREGDKFSG AIPSSSTYDE
0301: KGHSQELAFV DRVKAKLDTA DNQEFLRCLN LYSKEIISQP ELQSLVSDLI GVYPDLMDAF KVFLAQCDKN DGLLSGIVSK KSLWSEGKCP QPTKSLDKDT
0401: DREREKIERY RERDREKERL EKVAASQKWA KPISELDLSN CEQCTPSYRR LPKNYPIPIA SQKMEIGSQV LNDHWVSVTS GSEDYSFKHM RKNQYEESLF
0501: KCEDDRFELD MLLESVISAT NRVEELLAKI NSNELKTDTP ICIEDHLTAL NLRCIERLYS DHGLDVLDLL KKNAYLALPV ILTRLKQKQE EWARCRTEFN
0601: KVWADIYTKN YHRSLDHRSF YFKQQDSKNL STKALLAEIK EISEKKRGED DALLALAAGN RRTISSNMSF DYPDPDLHED LYQLIKYSCG EMCSTEQLDK
0701: VMKVWTEFLE PIFGVPSRPQ GAEDREDAVK STNHDREDQE DAVSPQNGAS IANSMRSNGP RKVNESNQVR QASELDKDVT SSKTSDALLS CDNTQNDKMP
0801: KNLTTPDERA ETKQAVSIER AHNSNALPLD GLLPQRNGKI SSLSVAGLSN SNPKPALTSG TEELKPNYVN GPRVEIGDNP VIPNGTVAEW FAGEAKVERE
0901: EGELSPTGDF EEDNYAVHGE NDMEALSKSK ENDATADDAS APRSSDGSGN TSHNGDVSGT DSGDGEDCYR EDDIDHNKVE SEGEAEEGMS DGHDDTEGDM
1001: PVLSISVKNL LHVKPLAKYV PPALYDKDND DSRKNSQVFY GNDSFYVLFR LHQILYDRIL SAKINSSSPD RKWKTSNPTN PADSYARIMD ALYNLLDGTS
1101: DNSKFEDDCR AIIGTQSYVL FTLDKLIYKL IKHLQAVAAD EMDNKLQQLY AYEKSRKPEK FLDAVYYENA LVLLPDEDIY RIECEQSTPS KLSIQLLDYG
1201: HDKPDVTSIS MDPTFAAYLH NVFLSYQPNA KENPRIYLKR NKRKNGGDDE LCTTDEVKII NGLECKITCS SSKVSYVLDT EDVLHRAKRR KLLNQSGLPL
1301: AHDSVCSGSL IRQRRTQRYQ KLLTGQ
Arabidopsis Description
SNL4Paired amphipathic helix protein Sin3-like 4 [Source:UniProtKB/Swiss-Prot;Acc:O04539]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.