Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 2
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH74716 | Soybean | nucleus | 87.62 | 95.29 |
| KRH45772 | Soybean | nucleus | 74.69 | 76.56 |
| KRG99216 | Soybean | nucleus | 73.57 | 76.18 |
| VIT_01s0026g01010.t01 | Wine grape | nucleus | 75.1 | 74.02 |
| CDY23529 | Canola | cytosol | 7.27 | 65.82 |
| CDY48380 | Canola | cytosol | 7.13 | 64.56 |
| GSMUA_Achr1P20690_001 | Banana | nucleus | 59.37 | 63.31 |
| GSMUA_Achr9P00800_001 | Banana | nucleus | 60.7 | 62.18 |
| AT1G70060.2 | Thale cress | nucleus | 56.29 | 60.71 |
| CDY11625 | Canola | nucleus | 54.41 | 60.31 |
| CDY38781 | Canola | nucleus | 54.06 | 59.97 |
| Bra016241.1-P | Field mustard | nucleus | 53.99 | 59.89 |
| CDX68358 | Canola | nucleus | 53.36 | 59.42 |
| AT1G70030.1 | Thale cress | cytosol | 6.64 | 59.38 |
| CDY23527 | Canola | nucleus | 53.64 | 59.27 |
| Os01t0109700-01 | Rice | nucleus | 54.76 | 59.05 |
| Zm00001d008429_P019 | Maize | nucleus | 59.23 | 58.7 |
| GSMUA_Achr11P... | Banana | nucleus | 56.43 | 58.56 |
| Zm00001d040123_P007 | Maize | nucleus | 58.74 | 58.54 |
| EES00449 | Sorghum | nucleus | 58.95 | 58.5 |
| KRH45776 | Soybean | nucleus | 37.48 | 58.13 |
| HORVU1Hr1G000290.3 | Barley | nucleus | 54.06 | 58.08 |
| GSMUA_Achr2P09580_001 | Banana | nucleus | 55.31 | 58.08 |
| CDY48381 | Canola | cytosol | 6.29 | 58.06 |
| CDY23528 | Canola | cytosol | 6.29 | 58.06 |
| Bra003968.1-P | Field mustard | cytosol | 6.29 | 58.06 |
| TraesCS1B01G002000.1 | Wheat | nucleus | 52.66 | 58.06 |
| Bra003967.1-P | Field mustard | nucleus | 53.36 | 58.02 |
| AT1G24190.3 | Thale cress | nucleus | 54.13 | 57.85 |
| TraesCS1A01G002700.1 | Wheat | nucleus | 53.78 | 57.73 |
| AT1G24200.1 | Thale cress | cytosol | 7.9 | 57.65 |
| KRH18559 | Soybean | nucleus | 18.88 | 57.45 |
| KRH18561 | Soybean | nucleus | 36.15 | 57.32 |
| TraesCS1D01G004900.4 | Wheat | nucleus | 53.78 | 57.17 |
| Os05t0100500-01 | Rice | plastid | 14.48 | 56.25 |
| KRG93437 | Soybean | nucleus | 54.97 | 56.06 |
| TraesCSU01G039900.1 | Wheat | nucleus | 55.24 | 55.28 |
| TraesCS3B01G005900.1 | Wheat | nucleus | 55.1 | 54.95 |
| TraesCS3D01G007600.2 | Wheat | nucleus, plastid | 52.87 | 54.82 |
| KRG99215 | Soybean | cytosol | 5.17 | 54.01 |
| KXG20992 | Sorghum | nucleus | 46.57 | 53.37 |
| Zm00001d035776_P004 | Maize | nucleus | 45.03 | 51.07 |
| HORVU3Hr1G000540.2 | Barley | plastid | 54.97 | 51.01 |
| KRH45778 | Soybean | cytosol | 22.31 | 50.08 |
| KRH18551 | Soybean | cytosol, nucleus, peroxisome | 5.38 | 35.65 |
| Zm00001d041450_P002 | Maize | nucleus | 18.46 | 33.59 |
| Zm00001d041453_P001 | Maize | nucleus | 21.68 | 26.84 |
Protein Annotations
| Gene3D:1.20.1160.11 | EntrezGene:100811928 | MapMan:12.3.2.4.2 | EMBL:ACUP02000707 | ncoils:Coil | EnsemblPlantsGene:GLYMA_02G026700 |
| GO:GO:0000118 | GO:GO:0000122 | GO:GO:0000785 | GO:GO:0001106 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0004407 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005654 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016575 | GO:GO:0016787 | GO:GO:0019538 | InterPro:HDAC_interact_dom |
| InterPro:IPR003822 | UniProt:K7K633 | EnsemblPlants:KRH69432 | ProteinID:KRH69432 | ProteinID:KRH69432.1 | ProteinID:KRH69433.1 |
| InterPro:PAH | InterPro:PAH_sf | PFAM:PF02671 | PFAM:PF08295 | PFAM:PF16879 | PFscan:PS51477 |
| PANTHER:PTHR12346 | PANTHER:PTHR12346:SF21 | SMART:SM00761 | SUPFAM:SSF47762 | InterPro:Sin3_C | UniParc:UPI0002962AB4 |
| SEG:seg | : | : | : | : | : |
Description
hypothetical protein
Coordinates
chr2:+:2399619..2412530
Molecular Weight (calculated)
162684.0 Da
IEP (calculated)
5.550
GRAVY (calculated)
-0.836
Length
1430 amino acids
Sequence
(BLAST)
(BLAST)
0001: MKRSRDEVFT SCSQLKRPVV SSRGEASGQP QIMNGGAQKL TTNDALAYLK AVKDIFQDKR DKYDDFLEVM KDFKAQRIDT AGVIARVKEL FKGHRDLILG
0101: FNTFLPKGYE ITLPSEDEQL APKKPVEFEE AINFVNKIKT RFQGDDHVYK SFLDILNMYR KENKSITEVY QEVAAIFQDH PDLLDEFTHF LPDASAAAST
0201: HFVSARNSML RDRSSAMPTI RQLHVEKRER TIVSHGDHDP SVDRPDPDND RGLLRIEKER RRVEKEKERR EDRDKRDRER DDRDFEHDGA RDRERFSHKR
0301: NRKVEDSGAE PFLDADENFG APPMPSTCDD KNSLKSMYSQ EFAFCENVKE KLRNPDDYQE FLKCLHIYSR EIITRHELQS LVGDLLGKYP DLMEGFNEFL
0401: LQSEKNDGGF LAGVMNKKSL WNDGHGLKQI KVDDGDRDRD RDRDRDRYRD DGMKERDREF RERDKSTVIA NKDVLGSKMS LYPSKEKYLS KPINELDLSN
0501: CDQCTPSYRL LPKNYPIPVA SQKTELGAGV LNDHWVSVTS GSEDYSFKHM RKNQYEESLF RCEDDRFELD MLLESVNVTT KRVEELLDKI NSNIIKGDSL
0601: IRIEEHLTAI NLRCIERLYG DHGLDVMEVL RKNAPLALPV ILTRLKQKQE EWARCRADFS KVWGEIYAKN YHKSLDHRSF YFKQQDTKSL STKALLAEIK
0701: EISEKKRKED DVLLAIAAGN RRPILPNLEF KYSDPDIHED LYQLIKYSSG EICTTEHVDK VMKVWTTFLE PMLCVPCRPQ GAEDTEDVVK AKNNHVKNGT
0801: ATVAESDCSP VVGAIIMNPK HINVSRNGDD CMPLDQSTSN KAWQSNGGVR EDRYLDDCAL RKTETLGSNT QHGKMNRIAF TPDGPSGFNN KQDQSSERLV
0901: NANVSPASGM EQSNGRTNID NLSGLTATPT RPGNASVEGG LDIPSSEGGD STRLGTSTNG AITGGTKVHR YQEESVRAFK SEREEGELSP NGDFEEDNSE
1001: VYGGNGLDAV HKGKDGGVSR QYQNRHGEEV CGETRGENDA DADDEGEESP HRSSEDSENA SENVDVSGSE SADAEECSRE EHEDGEHDNK AESEGEAEGI
1101: ADAHDVEGDG MPLPYSERFL LTVKPLAKHV PPMLHEKDMN SRVFYGNDSI YVLLRLHQTL YERIQSAKIN SSSADRKWKA SSDTSSTDQY DRFMNALYSL
1201: LDGSSDNTKF EDDCRAIIGI QSYVLFTLDK LIYKLVKQLQ AVAADEMDTK LLQLYAYEKS RKPGKFVDMV YHENARVLLH DENIYRIEYS PGPMKLSIQL
1301: MDSGHDKPEV TAVSMDPNFS TYLHNDFLSV VPDKKEKSGI FLKRNKRRYA GNDEFSSQAM EGLQIINGLE CKIACSSSKV SYVLDTEDFL FRIRRKKRVL
1401: HPKSSGAHEQ AQSPKSSSRV QRFRNLFSIT
0101: FNTFLPKGYE ITLPSEDEQL APKKPVEFEE AINFVNKIKT RFQGDDHVYK SFLDILNMYR KENKSITEVY QEVAAIFQDH PDLLDEFTHF LPDASAAAST
0201: HFVSARNSML RDRSSAMPTI RQLHVEKRER TIVSHGDHDP SVDRPDPDND RGLLRIEKER RRVEKEKERR EDRDKRDRER DDRDFEHDGA RDRERFSHKR
0301: NRKVEDSGAE PFLDADENFG APPMPSTCDD KNSLKSMYSQ EFAFCENVKE KLRNPDDYQE FLKCLHIYSR EIITRHELQS LVGDLLGKYP DLMEGFNEFL
0401: LQSEKNDGGF LAGVMNKKSL WNDGHGLKQI KVDDGDRDRD RDRDRDRYRD DGMKERDREF RERDKSTVIA NKDVLGSKMS LYPSKEKYLS KPINELDLSN
0501: CDQCTPSYRL LPKNYPIPVA SQKTELGAGV LNDHWVSVTS GSEDYSFKHM RKNQYEESLF RCEDDRFELD MLLESVNVTT KRVEELLDKI NSNIIKGDSL
0601: IRIEEHLTAI NLRCIERLYG DHGLDVMEVL RKNAPLALPV ILTRLKQKQE EWARCRADFS KVWGEIYAKN YHKSLDHRSF YFKQQDTKSL STKALLAEIK
0701: EISEKKRKED DVLLAIAAGN RRPILPNLEF KYSDPDIHED LYQLIKYSSG EICTTEHVDK VMKVWTTFLE PMLCVPCRPQ GAEDTEDVVK AKNNHVKNGT
0801: ATVAESDCSP VVGAIIMNPK HINVSRNGDD CMPLDQSTSN KAWQSNGGVR EDRYLDDCAL RKTETLGSNT QHGKMNRIAF TPDGPSGFNN KQDQSSERLV
0901: NANVSPASGM EQSNGRTNID NLSGLTATPT RPGNASVEGG LDIPSSEGGD STRLGTSTNG AITGGTKVHR YQEESVRAFK SEREEGELSP NGDFEEDNSE
1001: VYGGNGLDAV HKGKDGGVSR QYQNRHGEEV CGETRGENDA DADDEGEESP HRSSEDSENA SENVDVSGSE SADAEECSRE EHEDGEHDNK AESEGEAEGI
1101: ADAHDVEGDG MPLPYSERFL LTVKPLAKHV PPMLHEKDMN SRVFYGNDSI YVLLRLHQTL YERIQSAKIN SSSADRKWKA SSDTSSTDQY DRFMNALYSL
1201: LDGSSDNTKF EDDCRAIIGI QSYVLFTLDK LIYKLVKQLQ AVAADEMDTK LLQLYAYEKS RKPGKFVDMV YHENARVLLH DENIYRIEYS PGPMKLSIQL
1301: MDSGHDKPEV TAVSMDPNFS TYLHNDFLSV VPDKKEKSGI FLKRNKRRYA GNDEFSSQAM EGLQIINGLE CKIACSSSKV SYVLDTEDFL FRIRRKKRVL
1401: HPKSSGAHEQ AQSPKSSSRV QRFRNLFSIT
0001: MVGGSSAQKL TTNDALAYLK AVKDKFQDKR DKYDEFLEVM KDFKAQRVDT TGVILRVKEL FKGNRELILG FNTFLPKGFE ITLRPEDDQP AAPKKPVEFE
0101: EAISFVNKIK TRFQGDDRVY KSFLDILNMY RKENKSITEV YHEVAILFRD HHDLLGEFTH FLPDTSATAS TNDSVKVPVR DRGIKSLPTM RQIDLDKKDR
0201: IITSHPNRAL KTENMDVDHE RSLLKDSKEE VRRIDKKNDF MDDRDRKDYR GLDHDSHKEH FFNSKKKLIR KDDDSAEMSD QAREGDKFSG AIPSSSTYDE
0301: KGHSQELAFV DRVKAKLDTA DNQEFLRCLN LYSKEIISQP ELQSLVSDLI GVYPDLMDAF KVFLAQCDKN DGLLSGIVSK KSLWSEGKCP QPTKSLDKDT
0401: DREREKIERY RERDREKERL EKVAASQKWA KPISELDLSN CEQCTPSYRR LPKNYPIPIA SQKMEIGSQV LNDHWVSVTS GSEDYSFKHM RKNQYEESLF
0501: KCEDDRFELD MLLESVISAT NRVEELLAKI NSNELKTDTP ICIEDHLTAL NLRCIERLYS DHGLDVLDLL KKNAYLALPV ILTRLKQKQE EWARCRTEFN
0601: KVWADIYTKN YHRSLDHRSF YFKQQDSKNL STKALLAEIK EISEKKRGED DALLALAAGN RRTISSNMSF DYPDPDLHED LYQLIKYSCG EMCSTEQLDK
0701: VMKVWTEFLE PIFGVPSRPQ GAEDREDAVK STNHDREDQE DAVSPQNGAS IANSMRSNGP RKVNESNQVR QASELDKDVT SSKTSDALLS CDNTQNDKMP
0801: KNLTTPDERA ETKQAVSIER AHNSNALPLD GLLPQRNGKI SSLSVAGLSN SNPKPALTSG TEELKPNYVN GPRVEIGDNP VIPNGTVAEW FAGEAKVERE
0901: EGELSPTGDF EEDNYAVHGE NDMEALSKSK ENDATADDAS APRSSDGSGN TSHNGDVSGT DSGDGEDCYR EDDIDHNKVE SEGEAEEGMS DGHDDTEGDM
1001: PVLSISVKNL LHVKPLAKYV PPALYDKDND DSRKNSQVFY GNDSFYVLFR LHQILYDRIL SAKINSSSPD RKWKTSNPTN PADSYARIMD ALYNLLDGTS
1101: DNSKFEDDCR AIIGTQSYVL FTLDKLIYKL IKHLQAVAAD EMDNKLQQLY AYEKSRKPEK FLDAVYYENA LVLLPDEDIY RIECEQSTPS KLSIQLLDYG
1201: HDKPDVTSIS MDPTFAAYLH NVFLSYQPNA KENPRIYLKR NKRKNGGDDE LCTTDEVKII NGLECKITCS SSKVSYVLDT EDVLHRAKRR KLLNQSGLPL
1301: AHDSVCSGSL IRQRRTQRYQ KLLTGQ
0101: EAISFVNKIK TRFQGDDRVY KSFLDILNMY RKENKSITEV YHEVAILFRD HHDLLGEFTH FLPDTSATAS TNDSVKVPVR DRGIKSLPTM RQIDLDKKDR
0201: IITSHPNRAL KTENMDVDHE RSLLKDSKEE VRRIDKKNDF MDDRDRKDYR GLDHDSHKEH FFNSKKKLIR KDDDSAEMSD QAREGDKFSG AIPSSSTYDE
0301: KGHSQELAFV DRVKAKLDTA DNQEFLRCLN LYSKEIISQP ELQSLVSDLI GVYPDLMDAF KVFLAQCDKN DGLLSGIVSK KSLWSEGKCP QPTKSLDKDT
0401: DREREKIERY RERDREKERL EKVAASQKWA KPISELDLSN CEQCTPSYRR LPKNYPIPIA SQKMEIGSQV LNDHWVSVTS GSEDYSFKHM RKNQYEESLF
0501: KCEDDRFELD MLLESVISAT NRVEELLAKI NSNELKTDTP ICIEDHLTAL NLRCIERLYS DHGLDVLDLL KKNAYLALPV ILTRLKQKQE EWARCRTEFN
0601: KVWADIYTKN YHRSLDHRSF YFKQQDSKNL STKALLAEIK EISEKKRGED DALLALAAGN RRTISSNMSF DYPDPDLHED LYQLIKYSCG EMCSTEQLDK
0701: VMKVWTEFLE PIFGVPSRPQ GAEDREDAVK STNHDREDQE DAVSPQNGAS IANSMRSNGP RKVNESNQVR QASELDKDVT SSKTSDALLS CDNTQNDKMP
0801: KNLTTPDERA ETKQAVSIER AHNSNALPLD GLLPQRNGKI SSLSVAGLSN SNPKPALTSG TEELKPNYVN GPRVEIGDNP VIPNGTVAEW FAGEAKVERE
0901: EGELSPTGDF EEDNYAVHGE NDMEALSKSK ENDATADDAS APRSSDGSGN TSHNGDVSGT DSGDGEDCYR EDDIDHNKVE SEGEAEEGMS DGHDDTEGDM
1001: PVLSISVKNL LHVKPLAKYV PPALYDKDND DSRKNSQVFY GNDSFYVLFR LHQILYDRIL SAKINSSSPD RKWKTSNPTN PADSYARIMD ALYNLLDGTS
1101: DNSKFEDDCR AIIGTQSYVL FTLDKLIYKL IKHLQAVAAD EMDNKLQQLY AYEKSRKPEK FLDAVYYENA LVLLPDEDIY RIECEQSTPS KLSIQLLDYG
1201: HDKPDVTSIS MDPTFAAYLH NVFLSYQPNA KENPRIYLKR NKRKNGGDDE LCTTDEVKII NGLECKITCS SSKVSYVLDT EDVLHRAKRR KLLNQSGLPL
1301: AHDSVCSGSL IRQRRTQRYQ KLLTGQ
Arabidopsis Description
SNL4Paired amphipathic helix protein Sin3-like 4 [Source:UniProtKB/Swiss-Prot;Acc:O04539]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.