Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1B01G002000.1 | Wheat | nucleus | 91.96 | 94.37 |
| TraesCS1A01G002700.1 | Wheat | nucleus | 94.44 | 94.37 |
| TraesCS1D01G004900.4 | Wheat | nucleus | 94.74 | 93.75 |
| Os05t0100500-01 | Rice | plastid | 18.78 | 67.93 |
| KXG20992 | Sorghum | nucleus | 58.9 | 62.82 |
| Zm00001d035776_P004 | Maize | nucleus | 58.75 | 62.01 |
| GSMUA_Achr1P20690_001 | Banana | nucleus | 62.36 | 61.89 |
| GSMUA_Achr9P00800_001 | Banana | nucleus | 63.34 | 60.39 |
| HORVU3Hr1G000540.2 | Barley | plastid | 69.12 | 59.7 |
| GSMUA_Achr11P... | Banana | nucleus | 60.18 | 58.13 |
| GSMUA_Achr2P09580_001 | Banana | nucleus | 58.83 | 57.49 |
| VIT_01s0026g01010.t01 | Wine grape | nucleus | 61.83 | 56.72 |
| CDY23529 | Canola | cytosol | 6.61 | 55.7 |
| CDY48380 | Canola | cytosol | 6.46 | 54.43 |
| KRH69432 | Soybean | nucleus | 58.08 | 54.06 |
| KRH74716 | Soybean | nucleus | 52.59 | 53.23 |
| AT1G70030.1 | Thale cress | cytosol | 6.39 | 53.12 |
| Bra003968.1-P | Field mustard | cytosol | 6.16 | 52.9 |
| CDY23528 | Canola | cytosol | 6.16 | 52.9 |
| CDY48381 | Canola | cytosol | 6.16 | 52.9 |
| AT1G24200.1 | Thale cress | cytosol | 7.66 | 52.04 |
| CDY38781 | Canola | nucleus | 49.81 | 51.44 |
| Bra016241.1-P | Field mustard | nucleus | 49.74 | 51.36 |
| CDY11625 | Canola | nucleus | 49.59 | 51.16 |
| CDY23527 | Canola | nucleus | 49.51 | 50.93 |
| CDX68358 | Canola | nucleus | 48.99 | 50.78 |
| AT1G70060.2 | Thale cress | nucleus | 50.34 | 50.53 |
| Bra003967.1-P | Field mustard | nucleus | 48.91 | 49.51 |
| AT1G24190.3 | Thale cress | nucleus | 49.59 | 49.33 |
| Zm00001d041450_P002 | Maize | nucleus | 20.74 | 35.11 |
| Zm00001d041453_P001 | Maize | nucleus | 23.97 | 27.62 |
| HORVU1Hr1G093550.1 | Barley | nucleus | 14.88 | 26.58 |
| HORVU1Hr1G093540.1 | Barley | nucleus | 15.55 | 26.07 |
| HORVU1Hr1G093530.1 | Barley | nucleus | 15.55 | 26.07 |
| HORVU1Hr1G093490.1 | Barley | nucleus | 15.03 | 25.81 |
Protein Annotations
| Gene3D:1.20.1160.11 | MapMan:12.3.2.4.2 | ncoils:Coil | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | InterPro:HDAC_interact_dom | EnsemblPlantsGene:HORVU1Hr1G000290 | EnsemblPlants:HORVU1Hr1G000290.3 | InterPro:IPR003822 | UniProt:M0Y2M8 |
| InterPro:PAH | InterPro:PAH_sf | PFAM:PF02671 | PFAM:PF08295 | PFAM:PF16879 | PFscan:PS51477 |
| PANTHER:PTHR12346 | PANTHER:PTHR12346:SF21 | SMART:SM00761 | SUPFAM:SSF47762 | InterPro:Sin3_C | UniParc:UPI00029697B2 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chrchr1H:+:968320..979886
Molecular Weight (calculated)
150335.0 Da
IEP (calculated)
5.842
GRAVY (calculated)
-0.775
Length
1331 amino acids
Sequence
(BLAST)
(BLAST)
0001: MSPPPASPAL SAQKLTTNDA LAYLKAVKDK FHDNRAKYDE FLEVMRDFKS ARIDTAGVII RVKTLFSGYP ELILGFNAFL PKGFAIKLQD IDGGDKKPVD
0101: FMEAINFVNK IKARFQAQDH VYKSFLAILN MYRMHNKSIQ DVYQEVATLF REHADLLEEF KHFLPDTSNA PQQLAAPKAV SAKQEAPAMP SASARNVQSI
0201: KRERPHPSTA ERDSSVDRPD LEHDPDRKRI DKEKDRKIDR DRKDHEKDGE YESKDLDGGL RKRKAFSKKL EGETHQGAAS ISASSYNDND ALKGAYTQEF
0301: LFCEKVKEKL EPEAYQEFLK CLHIYSQEII TRSELKNLVH DILQRYPELM NGFSEFLEHC ENIDGFLDGV INKRQTSRTV KALEKERDKG RAGEDRERDA
0401: EKLSEKERER LDKVSALNSK EATTHKATAF STKEKYLCKP ISELDLSNCQ RCTPSYRLLP KNYPVPASSC RTDLGVSVLN DHWVSVTSGS EDYSFKHMRK
0501: NQYEESLFRC EDDRFELDML LESVNVAIKR VEELIEKMQE NSIKPDSPIR IDEHLTSLNL RCIERLYGDH GLDVMDVLRK NASVALPVIL TRLKQKQEEW
0601: SRCRSDFNKV WAEIYAKNYH KSLDHRSFYF KQQDTKNLST RALLCEIKEI NEKKRKEDDV LLAIAAGNRR PIVPNMSFEY ADPEIHEDVY QIIKYSCGEV
0701: CGSTDQAEKV MRTWTTFVEP ILGVQPRTPV VEDAGVVKSK SRTPTTGLAS VGESNNVIPN GAVTVKQANG DESIPKEQAQ SSRGLLANGV SEDAHNGFHD
0801: ADRTVRRGEG PSNTSLHQTE QNQRRTNMEL TSGTNSSRSN FSGNEAVVEA MGGNETIPSI GRGEAGRPGP IPQKNPKVER EEGELSPNGD FEEELYRPLG
0901: NAAVGGASKP KEVSAGRTRP AEFAGENDAD ADDEGEESAQ RSTEDSENAS EAGEDASGSE SGDGGECSPE DHEDEEDVDH DDPDAKAESE GEAEGNTEAH
1001: DVDGGMTLPF SERLHNTVKP LAKHVPRALQ DHGGKFSRIF YGNDSFYVLF RLHQILYERI LSAKTNSSTA EKKWRTSKDT SSPHQYSKFM SALYNLLDGS
1101: SDNTKFEDDC RSIIGTQSYV LFTLDKLIYK VVKQLQAIAA DEMDNKLLQL YVYEKSRSPG RFFDLVYHEN ARVLLHDESI YRFERRSNPM RLTVQLMEYG
1201: HEKPEITAVS IDPNFSSYLY DEYLSSVSDS KVSEDVFLER NKRKRGSSNG PQASLEVMDD FKVANGLECK ITCKSSKVSY VLDTEDFLFR MRNRRRISSG
1301: PTTQAPGKAD FVKPADAVKA QRFHKFLLSR S
0101: FMEAINFVNK IKARFQAQDH VYKSFLAILN MYRMHNKSIQ DVYQEVATLF REHADLLEEF KHFLPDTSNA PQQLAAPKAV SAKQEAPAMP SASARNVQSI
0201: KRERPHPSTA ERDSSVDRPD LEHDPDRKRI DKEKDRKIDR DRKDHEKDGE YESKDLDGGL RKRKAFSKKL EGETHQGAAS ISASSYNDND ALKGAYTQEF
0301: LFCEKVKEKL EPEAYQEFLK CLHIYSQEII TRSELKNLVH DILQRYPELM NGFSEFLEHC ENIDGFLDGV INKRQTSRTV KALEKERDKG RAGEDRERDA
0401: EKLSEKERER LDKVSALNSK EATTHKATAF STKEKYLCKP ISELDLSNCQ RCTPSYRLLP KNYPVPASSC RTDLGVSVLN DHWVSVTSGS EDYSFKHMRK
0501: NQYEESLFRC EDDRFELDML LESVNVAIKR VEELIEKMQE NSIKPDSPIR IDEHLTSLNL RCIERLYGDH GLDVMDVLRK NASVALPVIL TRLKQKQEEW
0601: SRCRSDFNKV WAEIYAKNYH KSLDHRSFYF KQQDTKNLST RALLCEIKEI NEKKRKEDDV LLAIAAGNRR PIVPNMSFEY ADPEIHEDVY QIIKYSCGEV
0701: CGSTDQAEKV MRTWTTFVEP ILGVQPRTPV VEDAGVVKSK SRTPTTGLAS VGESNNVIPN GAVTVKQANG DESIPKEQAQ SSRGLLANGV SEDAHNGFHD
0801: ADRTVRRGEG PSNTSLHQTE QNQRRTNMEL TSGTNSSRSN FSGNEAVVEA MGGNETIPSI GRGEAGRPGP IPQKNPKVER EEGELSPNGD FEEELYRPLG
0901: NAAVGGASKP KEVSAGRTRP AEFAGENDAD ADDEGEESAQ RSTEDSENAS EAGEDASGSE SGDGGECSPE DHEDEEDVDH DDPDAKAESE GEAEGNTEAH
1001: DVDGGMTLPF SERLHNTVKP LAKHVPRALQ DHGGKFSRIF YGNDSFYVLF RLHQILYERI LSAKTNSSTA EKKWRTSKDT SSPHQYSKFM SALYNLLDGS
1101: SDNTKFEDDC RSIIGTQSYV LFTLDKLIYK VVKQLQAIAA DEMDNKLLQL YVYEKSRSPG RFFDLVYHEN ARVLLHDESI YRFERRSNPM RLTVQLMEYG
1201: HEKPEITAVS IDPNFSSYLY DEYLSSVSDS KVSEDVFLER NKRKRGSSNG PQASLEVMDD FKVANGLECK ITCKSSKVSY VLDTEDFLFR MRNRRRISSG
1301: PTTQAPGKAD FVKPADAVKA QRFHKFLLSR S
0001: MVGGGSAQKL TTNDALAYLK AVKDKFQDQR GKYDEFLEVM KNFKSQRVDT AGVITRVKEL FKGHQELILG FNTFLPKGFE ITLQPEDGQP PLKKRVEFEE
0101: AISFVNKIKT RFQGDDRVYK SFLDILNMYR RDSKSITEVY QEVAILFRDH SDLLVEFTHF LPDTSATASI PSVKTSVRER GVSLADKKDR IITPHPDHDY
0201: GTEHIDQDRE RPIKKENKEH MRGTNKENEH RDARDFEPHS KKEQFLNKKQ KLHIRGDDPA EISNQSKLSG AVPSSSTYDE KGAMKSYSQD LAIVDRVKEK
0301: LNASEYQEFL RCLNLFSKEI ISRPELQSLV GNLIGVYPDL MDSFIEFLVQ CEKNEGLLSG ILTKSKSTYL LQGEGKYPQP SLDNDRDQEH KRDDGLRDRD
0401: HEKERLEKAA ANLKWAKPIS ELDLSNCEQC TPSYRLLPKN YPISIASQKT EIGKLVLNDH WVSVTSGSED YSFSHMRKNQ YEESLFKCED DRFELDMLLE
0501: SVNSTTKHVE ELLTKINSNE LKTNSPIRVE DHLTALNLRC IERLYGDHGL DVMDVLKKNV SLALPVILTR LKQKQEEWAR CRSDFDKVWA EIYAKNYYKS
0601: LDHRSFYFKQ QDSKKLSMKA LLAEIKEITE KKREDDSLLA FAAGNRLSIS PDLEFDYPDH DLHEDLYQLI KYSCAEMCST EQLDKVMKIW TTFVEQIFGV
0701: PSRPQGAEDQ EDVVKSMNQN VKSGSSSAGE SEGSPHNYAS VADSRRSKSS RKANEHSQLG QTSNSERDGA AGRTSDALCE TAQHEKMLKN VVTSDEKPES
0801: KQAVSIERAH DSTALAVDGL LDQSNGGSSI VHMTGHCNNN LKPVTCGTEL ELKMNDGNGP KLEVGNKKLL TNGIAVEITS DQEMAGTSKV EREEGELSPN
0901: GDFEEDNFAV YAKTDFETFS KANDSTGNNI SGDRSREGEP SCLETRAEND AEGDENAARS SEDSRNEYEN GDVSGTESGG GEDPEDDLDN NNKGESEGEA
1001: ECMADAHDAE ENGSALPVSA RFLLHVKPLV KYVPSAIALH DKDKDSLKNS QVFYGNDSFY VLFRLHRILY ERILSAKVNS SSPEGKWRTS NTKNPTDSYA
1101: RFMTALYNLL DGTSDNAKFE DDCRAIIGTQ SYILFTLDKL IHKFIKHLQV VVADEMDNKL LQLYFYEKSR RPETIFDAVY YDNTRVLLPD ENIYRIECRL
1201: STPAKLSIQL MCNGLDKPDV TSVSIDPTFA AYLHNDFLSI QPNAREDRRI YLNRNKRKVC REDEQLYSTD EVKIKNGLEC KIACGSSKVS YVLETEDLLV
1301: RVKKRRKTLC HNQDSWVRQM RLQYYKNNFL
0101: AISFVNKIKT RFQGDDRVYK SFLDILNMYR RDSKSITEVY QEVAILFRDH SDLLVEFTHF LPDTSATASI PSVKTSVRER GVSLADKKDR IITPHPDHDY
0201: GTEHIDQDRE RPIKKENKEH MRGTNKENEH RDARDFEPHS KKEQFLNKKQ KLHIRGDDPA EISNQSKLSG AVPSSSTYDE KGAMKSYSQD LAIVDRVKEK
0301: LNASEYQEFL RCLNLFSKEI ISRPELQSLV GNLIGVYPDL MDSFIEFLVQ CEKNEGLLSG ILTKSKSTYL LQGEGKYPQP SLDNDRDQEH KRDDGLRDRD
0401: HEKERLEKAA ANLKWAKPIS ELDLSNCEQC TPSYRLLPKN YPISIASQKT EIGKLVLNDH WVSVTSGSED YSFSHMRKNQ YEESLFKCED DRFELDMLLE
0501: SVNSTTKHVE ELLTKINSNE LKTNSPIRVE DHLTALNLRC IERLYGDHGL DVMDVLKKNV SLALPVILTR LKQKQEEWAR CRSDFDKVWA EIYAKNYYKS
0601: LDHRSFYFKQ QDSKKLSMKA LLAEIKEITE KKREDDSLLA FAAGNRLSIS PDLEFDYPDH DLHEDLYQLI KYSCAEMCST EQLDKVMKIW TTFVEQIFGV
0701: PSRPQGAEDQ EDVVKSMNQN VKSGSSSAGE SEGSPHNYAS VADSRRSKSS RKANEHSQLG QTSNSERDGA AGRTSDALCE TAQHEKMLKN VVTSDEKPES
0801: KQAVSIERAH DSTALAVDGL LDQSNGGSSI VHMTGHCNNN LKPVTCGTEL ELKMNDGNGP KLEVGNKKLL TNGIAVEITS DQEMAGTSKV EREEGELSPN
0901: GDFEEDNFAV YAKTDFETFS KANDSTGNNI SGDRSREGEP SCLETRAEND AEGDENAARS SEDSRNEYEN GDVSGTESGG GEDPEDDLDN NNKGESEGEA
1001: ECMADAHDAE ENGSALPVSA RFLLHVKPLV KYVPSAIALH DKDKDSLKNS QVFYGNDSFY VLFRLHRILY ERILSAKVNS SSPEGKWRTS NTKNPTDSYA
1101: RFMTALYNLL DGTSDNAKFE DDCRAIIGTQ SYILFTLDKL IHKFIKHLQV VVADEMDNKL LQLYFYEKSR RPETIFDAVY YDNTRVLLPD ENIYRIECRL
1201: STPAKLSIQL MCNGLDKPDV TSVSIDPTFA AYLHNDFLSI QPNAREDRRI YLNRNKRKVC REDEQLYSTD EVKIKNGLEC KIACGSSKVS YVLETEDLLV
1301: RVKKRRKTLC HNQDSWVRQM RLQYYKNNFL
Arabidopsis Description
SNL3SIN3-like 3 [Source:TAIR;Acc:AT1G24190]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.