Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG20992 | Sorghum | nucleus | 83.9 | 84.78 |
| HORVU1Hr1G000290.3 | Barley | nucleus | 62.01 | 58.75 |
| TraesCS1B01G002000.1 | Wheat | nucleus | 60.27 | 58.6 |
| TraesCS1A01G002700.1 | Wheat | nucleus | 61.86 | 58.56 |
| TraesCS1D01G004900.4 | Wheat | nucleus | 62.09 | 58.22 |
| Zm00001d008429_P019 | Maize | nucleus | 61.3 | 53.57 |
| Zm00001d040123_P007 | Maize | nucleus | 60.9 | 53.52 |
| GSMUA_Achr1P20690_001 | Banana | nucleus | 54.96 | 51.68 |
| GSMUA_Achr9P00800_001 | Banana | nucleus | 56.3 | 50.86 |
| CDY23529 | Canola | cytosol | 6.19 | 49.37 |
| Os05t0100500-01 | Rice | plastid | 14.35 | 49.18 |
| GSMUA_Achr11P... | Banana | nucleus | 52.97 | 48.48 |
| GSMUA_Achr2P09580_001 | Banana | nucleus | 52.18 | 48.31 |
| CDY48380 | Canola | cytosol | 6.03 | 48.1 |
| VIT_01s0026g01010.t01 | Wine grape | nucleus | 53.53 | 46.52 |
| AT1G24200.1 | Thale cress | cytosol | 7.06 | 45.41 |
| KRH69432 | Soybean | nucleus | 51.07 | 45.03 |
| KRH74716 | Soybean | nucleus | 46.79 | 44.87 |
| CDY11625 | Canola | nucleus | 45.12 | 44.11 |
| CDY38781 | Canola | nucleus | 44.96 | 43.99 |
| CDX68358 | Canola | nucleus | 44.73 | 43.93 |
| Bra016241.1-P | Field mustard | nucleus | 44.88 | 43.91 |
| CDY23527 | Canola | nucleus | 45.04 | 43.89 |
| AT1G70060.2 | Thale cress | nucleus | 45.36 | 43.14 |
| Bra003967.1-P | Field mustard | nucleus | 44.73 | 42.89 |
| AT1G70030.1 | Thale cress | cytosol | 5.39 | 42.5 |
| AT1G24190.3 | Thale cress | nucleus | 44.65 | 42.08 |
| Zm00001d041450_P002 | Maize | nucleus | 24.98 | 40.08 |
| Bra003968.1-P | Field mustard | cytosol | 4.76 | 38.71 |
| CDY48381 | Canola | cytosol | 4.76 | 38.71 |
| CDY23528 | Canola | cytosol | 4.76 | 38.71 |
| Zm00001d041453_P001 | Maize | nucleus | 29.02 | 31.69 |
| Zm00001d009729_P001 | Maize | nucleus | 5.08 | 26.12 |
| Zm00001d008431_P001 | Maize | nucleus | 2.62 | 25.38 |
Protein Annotations
| Gene3D:1.20.1160.11 | MapMan:12.3.2.4.2 | UniProt:A0A1D6LIT0 | ProteinID:AQK79686.1 | ProteinID:AQK79687.1 | ncoils:Coil |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:HDAC_interact_dom | InterPro:IPR003822 |
| InterPro:PAH | InterPro:PAH_sf | PFAM:PF02671 | PFAM:PF08295 | PFAM:PF16879 | PFscan:PS51477 |
| PANTHER:PTHR12346 | PANTHER:PTHR12346:SF21 | SMART:SM00761 | SUPFAM:SSF47762 | InterPro:Sin3_C | UniParc:UPI0008459753 |
| EnsemblPlantsGene:Zm00001d035776 | EnsemblPlants:Zm00001d035776_P004 | EnsemblPlants:Zm00001d035776_T004 | SEG:seg | : | : |
Description
sin homolog1Paired amphipathic helix protein Sin3-like 3
Coordinates
chr6:+:48040384..48053188
Molecular Weight (calculated)
144186.0 Da
IEP (calculated)
5.996
GRAVY (calculated)
-0.792
Length
1261 amino acids
Sequence
(BLAST)
(BLAST)
0001: MARRPPPSPP PPAQGNGSGS GSLTTRDALA YLKAVKDKFQ EKRHTYEQFI QVMRDFKSDR LDSTGVIARV KTIFHGYPDL ILGFNAFLPK EHAIRPLDLR
0101: EDKKPVDYPR AISLVNRIKS RFQQEEHVYK SFLGILNKYR MHNKPIQDVY NEVTALLHGH PDLLEEFSHF LPDTPMPPPQ AGTTTKVRHD DNNAIMHSVT
0201: RAQTVQVNQQ IIESPVFNSK SQTVQRGRDF PSTADWDTSA DRLDLEHDIQ KSCIEKEKIR DACPRQHRRG YKRNEKNDEY ENEDLDVEQC GHKSQRKMEG
0301: TGDDTPGDAT LSSFNCSHAQ EFQFCEKLKA HLEPEAYQEF LKCLHIYNQD IITRNELKRL VKDILQHYPD LVNGFNDFLG HCENIDGFLE GTFNKRQTSR
0401: MVRPVEKERY KENEGDSDPE KERYKESKNS ERVLTFNSKE GAAHEASTFP SKEKYNLCKP ISELDLSNCQ RCTPSYRLLP KNYPVPSASN RTDTEASVLN
0501: DRWVSVTSGS EDYSFKHMRK NQYEESLFRC EDDMFELDML LESVTVAIER VEKLVERMEG NSLKPDSSIS LDEHLTSLNM RCIERLYGDH GLDVIDVLRK
0601: NVGVTLPVIL TRLKQKQEEW SRCQSDFNKV WAEVYSKNYH KSLDHRSFYF KQQDTKNLNT KALLSQIKEI SEKNRKGDDV LLAIAAGNRW PLVANMSFVY
0701: LDMDIHEDLY QIIKYSCGEL CNSSDQVNKV MRIWTTFLEP LLGIHHRAHG AEDADMVKSK RRTREVGLAC GGKTNNAAAK GGNGSKSAGA ESVAEFMGRN
0801: ETIPSMKSIK HDRITSLYGV GVHPFSAYSV SHNNLRPETE EGELSPNGDF KEEHFCVFED EAVDGTSKQN EGSTSRSPQG RPKNYLKFSG KDHSGAENEG
0901: NKRAQRSAED SENASEADED ISGSESAGDE ESSHEDQEEE EDDMDLDTKA KNDCRAEVNR EAQGLDGGTS LSFSECLQST VKPISKYVST ALPNHEKKLS
1001: HIFYGNDSFY VLFRLHQIFY ERILSAKTNC STSDNNWKAS RHINSPDQYS RFISALYNLL DGSSDHTKFE DDCRSIIGTQ SYVLFTIDKL IYKIVKQLQA
1101: LASDEMDNQL LQLYLYEKSR SPGSFFDLVY HENARALLHD DNIYRFECHS DPTELTIQLM EYGNEKPELT AVSFDPTFSP YLYNGYLSSI DDTKLVDDVF
1201: LRRNKRKQGR NDDSPTSLKI MDNVMFANGL ECKISCESSK VSYVLDTEDV LFRTRKRRSS I
0101: EDKKPVDYPR AISLVNRIKS RFQQEEHVYK SFLGILNKYR MHNKPIQDVY NEVTALLHGH PDLLEEFSHF LPDTPMPPPQ AGTTTKVRHD DNNAIMHSVT
0201: RAQTVQVNQQ IIESPVFNSK SQTVQRGRDF PSTADWDTSA DRLDLEHDIQ KSCIEKEKIR DACPRQHRRG YKRNEKNDEY ENEDLDVEQC GHKSQRKMEG
0301: TGDDTPGDAT LSSFNCSHAQ EFQFCEKLKA HLEPEAYQEF LKCLHIYNQD IITRNELKRL VKDILQHYPD LVNGFNDFLG HCENIDGFLE GTFNKRQTSR
0401: MVRPVEKERY KENEGDSDPE KERYKESKNS ERVLTFNSKE GAAHEASTFP SKEKYNLCKP ISELDLSNCQ RCTPSYRLLP KNYPVPSASN RTDTEASVLN
0501: DRWVSVTSGS EDYSFKHMRK NQYEESLFRC EDDMFELDML LESVTVAIER VEKLVERMEG NSLKPDSSIS LDEHLTSLNM RCIERLYGDH GLDVIDVLRK
0601: NVGVTLPVIL TRLKQKQEEW SRCQSDFNKV WAEVYSKNYH KSLDHRSFYF KQQDTKNLNT KALLSQIKEI SEKNRKGDDV LLAIAAGNRW PLVANMSFVY
0701: LDMDIHEDLY QIIKYSCGEL CNSSDQVNKV MRIWTTFLEP LLGIHHRAHG AEDADMVKSK RRTREVGLAC GGKTNNAAAK GGNGSKSAGA ESVAEFMGRN
0801: ETIPSMKSIK HDRITSLYGV GVHPFSAYSV SHNNLRPETE EGELSPNGDF KEEHFCVFED EAVDGTSKQN EGSTSRSPQG RPKNYLKFSG KDHSGAENEG
0901: NKRAQRSAED SENASEADED ISGSESAGDE ESSHEDQEEE EDDMDLDTKA KNDCRAEVNR EAQGLDGGTS LSFSECLQST VKPISKYVST ALPNHEKKLS
1001: HIFYGNDSFY VLFRLHQIFY ERILSAKTNC STSDNNWKAS RHINSPDQYS RFISALYNLL DGSSDHTKFE DDCRSIIGTQ SYVLFTIDKL IYKIVKQLQA
1101: LASDEMDNQL LQLYLYEKSR SPGSFFDLVY HENARALLHD DNIYRFECHS DPTELTIQLM EYGNEKPELT AVSFDPTFSP YLYNGYLSSI DDTKLVDDVF
1201: LRRNKRKQGR NDDSPTSLKI MDNVMFANGL ECKISCESSK VSYVLDTEDV LFRTRKRRSS I
0001: MVGGGSAQKL TTNDALAYLK AVKDKFQDQR GKYDEFLEVM KNFKSQRVDT AGVITRVKEL FKGHQELILG FNTFLPKGFE ITLQPEDGQP PLKKRVEFEE
0101: AISFVNKIKT RFQGDDRVYK SFLDILNMYR RDSKSITEVY QEVAILFRDH SDLLVEFTHF LPDTSATASI PSVKTSVRER GVSLADKKDR IITPHPDHDY
0201: GTEHIDQDRE RPIKKENKEH MRGTNKENEH RDARDFEPHS KKEQFLNKKQ KLHIRGDDPA EISNQSKLSG AVPSSSTYDE KGAMKSYSQD LAIVDRVKEK
0301: LNASEYQEFL RCLNLFSKEI ISRPELQSLV GNLIGVYPDL MDSFIEFLVQ CEKNEGLLSG ILTKSKSTYL LQGEGKYPQP SLDNDRDQEH KRDDGLRDRD
0401: HEKERLEKAA ANLKWAKPIS ELDLSNCEQC TPSYRLLPKN YPISIASQKT EIGKLVLNDH WVSVTSGSED YSFSHMRKNQ YEESLFKCED DRFELDMLLE
0501: SVNSTTKHVE ELLTKINSNE LKTNSPIRVE DHLTALNLRC IERLYGDHGL DVMDVLKKNV SLALPVILTR LKQKQEEWAR CRSDFDKVWA EIYAKNYYKS
0601: LDHRSFYFKQ QDSKKLSMKA LLAEIKEITE KKREDDSLLA FAAGNRLSIS PDLEFDYPDH DLHEDLYQLI KYSCAEMCST EQLDKVMKIW TTFVEQIFGV
0701: PSRPQGAEDQ EDVVKSMNQN VKSGSSSAGE SEGSPHNYAS VADSRRSKSS RKANEHSQLG QTSNSERDGA AGRTSDALCE TAQHEKMLKN VVTSDEKPES
0801: KQAVSIERAH DSTALAVDGL LDQSNGGSSI VHMTGHCNNN LKPVTCGTEL ELKMNDGNGP KLEVGNKKLL TNGIAVEITS DQEMAGTSKV EREEGELSPN
0901: GDFEEDNFAV YAKTDFETFS KANDSTGNNI SGDRSREGEP SCLETRAEND AEGDENAARS SEDSRNEYEN GDVSGTESGG GEDPEDDLDN NNKGESEGEA
1001: ECMADAHDAE ENGSALPVSA RFLLHVKPLV KYVPSAIALH DKDKDSLKNS QVFYGNDSFY VLFRLHRILY ERILSAKVNS SSPEGKWRTS NTKNPTDSYA
1101: RFMTALYNLL DGTSDNAKFE DDCRAIIGTQ SYILFTLDKL IHKFIKHLQV VVADEMDNKL LQLYFYEKSR RPETIFDAVY YDNTRVLLPD ENIYRIECRL
1201: STPAKLSIQL MCNGLDKPDV TSVSIDPTFA AYLHNDFLSI QPNAREDRRI YLNRNKRKVC REDEQLYSTD EVKIKNGLEC KIACGSSKVS YVLETEDLLV
1301: RVKKRRKTLC HNQDSWVRQM RLQYYKNNFL
0101: AISFVNKIKT RFQGDDRVYK SFLDILNMYR RDSKSITEVY QEVAILFRDH SDLLVEFTHF LPDTSATASI PSVKTSVRER GVSLADKKDR IITPHPDHDY
0201: GTEHIDQDRE RPIKKENKEH MRGTNKENEH RDARDFEPHS KKEQFLNKKQ KLHIRGDDPA EISNQSKLSG AVPSSSTYDE KGAMKSYSQD LAIVDRVKEK
0301: LNASEYQEFL RCLNLFSKEI ISRPELQSLV GNLIGVYPDL MDSFIEFLVQ CEKNEGLLSG ILTKSKSTYL LQGEGKYPQP SLDNDRDQEH KRDDGLRDRD
0401: HEKERLEKAA ANLKWAKPIS ELDLSNCEQC TPSYRLLPKN YPISIASQKT EIGKLVLNDH WVSVTSGSED YSFSHMRKNQ YEESLFKCED DRFELDMLLE
0501: SVNSTTKHVE ELLTKINSNE LKTNSPIRVE DHLTALNLRC IERLYGDHGL DVMDVLKKNV SLALPVILTR LKQKQEEWAR CRSDFDKVWA EIYAKNYYKS
0601: LDHRSFYFKQ QDSKKLSMKA LLAEIKEITE KKREDDSLLA FAAGNRLSIS PDLEFDYPDH DLHEDLYQLI KYSCAEMCST EQLDKVMKIW TTFVEQIFGV
0701: PSRPQGAEDQ EDVVKSMNQN VKSGSSSAGE SEGSPHNYAS VADSRRSKSS RKANEHSQLG QTSNSERDGA AGRTSDALCE TAQHEKMLKN VVTSDEKPES
0801: KQAVSIERAH DSTALAVDGL LDQSNGGSSI VHMTGHCNNN LKPVTCGTEL ELKMNDGNGP KLEVGNKKLL TNGIAVEITS DQEMAGTSKV EREEGELSPN
0901: GDFEEDNFAV YAKTDFETFS KANDSTGNNI SGDRSREGEP SCLETRAEND AEGDENAARS SEDSRNEYEN GDVSGTESGG GEDPEDDLDN NNKGESEGEA
1001: ECMADAHDAE ENGSALPVSA RFLLHVKPLV KYVPSAIALH DKDKDSLKNS QVFYGNDSFY VLFRLHRILY ERILSAKVNS SSPEGKWRTS NTKNPTDSYA
1101: RFMTALYNLL DGTSDNAKFE DDCRAIIGTQ SYILFTLDKL IHKFIKHLQV VVADEMDNKL LQLYFYEKSR RPETIFDAVY YDNTRVLLPD ENIYRIECRL
1201: STPAKLSIQL MCNGLDKPDV TSVSIDPTFA AYLHNDFLSI QPNAREDRRI YLNRNKRKVC REDEQLYSTD EVKIKNGLEC KIACGSSKVS YVLETEDLLV
1301: RVKKRRKTLC HNQDSWVRQM RLQYYKNNFL
Arabidopsis Description
SNL3SIN3-like 3 [Source:TAIR;Acc:AT1G24190]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.