Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES00446 | Sorghum | plastid | 69.23 | 69.23 |
| TraesCS3A01G002800.1 | Wheat | cytoskeleton, cytosol, nucleus | 27.69 | 18.95 |
| TraesCS3D01G007000.1 | Wheat | cytosol | 26.15 | 18.09 |
| Zm00001d041450_P002 | Maize | nucleus | 28.46 | 4.71 |
| Zm00001d041453_P001 | Maize | nucleus | 33.85 | 3.81 |
| Zm00001d008429_P019 | Maize | nucleus | 31.54 | 2.84 |
| Zm00001d040123_P007 | Maize | nucleus | 30.0 | 2.72 |
| Zm00001d035776_P004 | Maize | nucleus | 25.38 | 2.62 |
| Zm00001d009729_P001 | Maize | nucleus | 0.77 | 0.41 |
Protein Annotations
| Gene3D:1.20.1160.11 | EntrezGene:100277534 | MapMan:35.2 | UniProt:A0A1D6FCW6 | ProteinID:AQK89866.1 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR003822 | InterPro:PAH | InterPro:PAH_sf |
| PFAM:PF02671 | PFscan:PS51477 | PANTHER:PTHR12346 | SUPFAM:SSF47762 | UniParc:UPI0004DE927B | EnsemblPlantsGene:Zm00001d008431 |
| EnsemblPlants:Zm00001d008431_P001 | EnsemblPlants:Zm00001d008431_T001 | SEG:seg | : | : | : |
Description
Paired amphipathic helix protein Sin3-like 5
Coordinates
chr8:-:8616394..8617323
Molecular Weight (calculated)
14283.6 Da
IEP (calculated)
4.216
GRAVY (calculated)
-0.582
Length
130 amino acids
Sequence
(BLAST)
(BLAST)
001: MTYSSFSSDR PDADGGGAKN PPGPSPSPSV EDAMSFVQMV KEAFKERQPD KYGLFLRVME DFRNQRLDIA EVASTAKALF QDNPDLALRF NVFLPKGHQI
101: QLGLDELAAY LVRDINLGAD NNDDDSDGGQ
101: QLGLDELAAY LVRDINLGAD NNDDDSDGGQ
001: MKHLPVVSFK TMVANKKLTT TDALDFLHLV KTKYQDNREI YDSFLTIMKD FRGQRAKTCD VISKVKELFK GQPELLLGFN TFLPTGFEIT LSDDELTSNS
101: KFAHFDEAYE FVNKVKVVGQ NHTSN
101: KFAHFDEAYE FVNKVKVVGQ NHTSN
Arabidopsis Description
Paired amphipathic helix (PAH2) superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q84R24]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.