Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d041450_P002 | Maize | nucleus | 61.65 | 90.59 |
| CDY23529 | Canola | cytosol | 6.84 | 50.0 |
| CDY48380 | Canola | cytosol | 6.67 | 48.73 |
| AT1G24200.1 | Thale cress | cytosol | 7.71 | 45.41 |
| AT1G70030.1 | Thale cress | cytosol | 5.8 | 41.88 |
| Bra003968.1-P | Field mustard | cytosol | 5.37 | 40.0 |
| CDY23528 | Canola | cytosol | 5.37 | 40.0 |
| CDY48381 | Canola | cytosol | 5.37 | 40.0 |
| Os05t0100500-01 | Rice | plastid | 12.12 | 38.04 |
| Zm00001d008431_P001 | Maize | nucleus | 3.81 | 33.85 |
| Zm00001d035776_P004 | Maize | nucleus | 31.69 | 29.02 |
| KXG20992 | Sorghum | nucleus | 31.34 | 29.01 |
| TraesCS1B01G002000.1 | Wheat | nucleus | 27.71 | 24.67 |
| TraesCS1A01G002700.1 | Wheat | nucleus | 27.79 | 24.1 |
| TraesCS1D01G004900.4 | Wheat | nucleus | 27.97 | 24.01 |
| HORVU1Hr1G000290.3 | Barley | nucleus | 27.62 | 23.97 |
| KRH74716 | Soybean | nucleus | 26.49 | 23.27 |
| GSMUA_Achr1P20690_001 | Banana | nucleus | 26.49 | 22.82 |
| Zm00001d040123_P007 | Maize | nucleus | 28.14 | 22.65 |
| GSMUA_Achr9P00800_001 | Banana | nucleus | 27.27 | 22.56 |
| GSMUA_Achr2P09580_001 | Banana | nucleus | 26.49 | 22.47 |
| Zm00001d008429_P019 | Maize | nucleus | 28.05 | 22.45 |
| CDY11625 | Canola | nucleus | 25.02 | 22.4 |
| CDY38781 | Canola | nucleus | 24.85 | 22.27 |
| Bra016241.1-P | Field mustard | nucleus | 24.76 | 22.19 |
| VIT_01s0026g01010.t01 | Wine grape | nucleus | 27.53 | 21.92 |
| KRH69432 | Soybean | nucleus | 26.84 | 21.68 |
| CDX68358 | Canola | nucleus | 23.98 | 21.57 |
| GSMUA_Achr11P... | Banana | nucleus | 25.71 | 21.55 |
| CDY23527 | Canola | nucleus | 24.07 | 21.48 |
| AT1G70060.2 | Thale cress | nucleus | 24.33 | 21.19 |
| Bra003967.1-P | Field mustard | nucleus | 24.07 | 21.14 |
| AT1G24190.3 | Thale cress | nucleus | 24.33 | 21.0 |
| Zm00001d009729_P001 | Maize | nucleus | 3.2 | 15.1 |
Protein Annotations
| Gene3D:1.20.1160.11 | MapMan:35.1 | UniProt:A0A1D6MWA2 | ncoils:Coil | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | InterPro:HDAC_interact_dom | InterPro:IPR003822 | ProteinID:ONM33071.1 | InterPro:PAH |
| InterPro:PAH_sf | PFAM:PF02671 | PFAM:PF08295 | PFscan:PS51477 | PANTHER:PTHR12346 | PANTHER:PTHR12346:SF21 |
| SMART:SM00761 | SUPFAM:SSF47762 | UniParc:UPI00084366C2 | EnsemblPlantsGene:Zm00001d041453 | EnsemblPlants:Zm00001d041453_P001 | EnsemblPlants:Zm00001d041453_T001 |
| SEG:seg | : | : | : | : | : |
Description
Paired amphipathic helix protein Sin3-like 3
Coordinates
chr3:+:120947618..120954091
Molecular Weight (calculated)
129850.0 Da
IEP (calculated)
5.961
GRAVY (calculated)
-1.000
Length
1155 amino acids
Sequence
(BLAST)
(BLAST)
0001: MARSPPPPPP SPAQGNGNGS GSGSLTARDA LAYIKAVKDN FQEKRHTYEQ FLQVMRDFKS NRLDSAGLIA RVKTLFHGYP DLVLGINAFL PKGHAIRPQD
0101: LSEDKEPVDY PRAINLVNRI KIRFQQEEHV YKSFLGILSM YRMDNKPIQD VYDEVTLLFH GHPDLLEEFT HFLPDTPIPP PEAGTTSKVR NDDKNAITHS
0201: AMRAQTVQRE RALPSAADSD SSVDRLDLEH DIQKGCIGKD KVRNACHGQH RRYYKRNRKN DKYENEDLDA EQSGPKSQRK VEGTGDDTPG VATMSSFNCN
0301: EGDSDPEKES KVRNDDKNAI MHSAMRAQTV QSERALPSAA DSDSSVDRLD LEHDIQKECI EKDKVRNACH DQHRGDYKRN MMNDEYENED LDAEQSGPKS
0401: QRKVEGTGDD TPGVATMSSF NCNEGDNDPE KESKVRNDDK NAIMHSAMRA QTVQRERALP SAADSDSSVD RLDLEHDIRK GCIEKDKVRN ACHGQHRRYY
0501: NRNRKNDKYE NEDLDAEQSG PKSQRKVEGT SDDTPGVATM SSFNCNEGDN DPEKESKVRN DDKNAIMHSA MRAQTVQSER ALPSAADSDS SVDRLDLEHD
0601: IQKECIEKDK VRNACHDQHR GDYKRNRMND EYENEDLDAE QSGPKSQRKV EGTGDDTPGV VTMSSFNCNE GDNDPEEESK VRNDNKNAIM HSAMRAQTVQ
0701: RERALLSAAD SDSSVDRLDL EHDIRKGCIE KDKVRNACHG QHRRDYKRNR KNDEYENEDL DAERSGPKSQ RKVEGTGDDS PGIAAMSSFN CNEGDSDPEK
0801: ERYNERGKSE RVLTFNSKEG AAHEASTFPS KEKYNLCKPI SELDLSNCQW CTPSYRLLPK NYPVPSASKR TDIEASVLND FCVLVTSGSG AFKHMRKNQY
0901: EEILFICEDD MFELDVLLES VSVTIKRVEE LVESMEGNSL KPDSSIHLDE HLTSLNMRCI EWLYGDHGLD VVDVLQKNAG VTLPVILTRL KQKQEEWSMC
1001: QSDFNKVWAE INEISEKNRK GDDVLLAISA GNRWPLVGKK QRTAGKRWAL KKHRHPPAWA SGTMPPPLLA SRASKNRTTS SMSGRFSGLA SQHLCMMFAI
1101: GLGQQRQAAG SAHTECQAAG SGTCMFSSVC GRLPAVNPGT ENKPDEQRRM IRLQS
0101: LSEDKEPVDY PRAINLVNRI KIRFQQEEHV YKSFLGILSM YRMDNKPIQD VYDEVTLLFH GHPDLLEEFT HFLPDTPIPP PEAGTTSKVR NDDKNAITHS
0201: AMRAQTVQRE RALPSAADSD SSVDRLDLEH DIQKGCIGKD KVRNACHGQH RRYYKRNRKN DKYENEDLDA EQSGPKSQRK VEGTGDDTPG VATMSSFNCN
0301: EGDSDPEKES KVRNDDKNAI MHSAMRAQTV QSERALPSAA DSDSSVDRLD LEHDIQKECI EKDKVRNACH DQHRGDYKRN MMNDEYENED LDAEQSGPKS
0401: QRKVEGTGDD TPGVATMSSF NCNEGDNDPE KESKVRNDDK NAIMHSAMRA QTVQRERALP SAADSDSSVD RLDLEHDIRK GCIEKDKVRN ACHGQHRRYY
0501: NRNRKNDKYE NEDLDAEQSG PKSQRKVEGT SDDTPGVATM SSFNCNEGDN DPEKESKVRN DDKNAIMHSA MRAQTVQSER ALPSAADSDS SVDRLDLEHD
0601: IQKECIEKDK VRNACHDQHR GDYKRNRMND EYENEDLDAE QSGPKSQRKV EGTGDDTPGV VTMSSFNCNE GDNDPEEESK VRNDNKNAIM HSAMRAQTVQ
0701: RERALLSAAD SDSSVDRLDL EHDIRKGCIE KDKVRNACHG QHRRDYKRNR KNDEYENEDL DAERSGPKSQ RKVEGTGDDS PGIAAMSSFN CNEGDSDPEK
0801: ERYNERGKSE RVLTFNSKEG AAHEASTFPS KEKYNLCKPI SELDLSNCQW CTPSYRLLPK NYPVPSASKR TDIEASVLND FCVLVTSGSG AFKHMRKNQY
0901: EEILFICEDD MFELDVLLES VSVTIKRVEE LVESMEGNSL KPDSSIHLDE HLTSLNMRCI EWLYGDHGLD VVDVLQKNAG VTLPVILTRL KQKQEEWSMC
1001: QSDFNKVWAE INEISEKNRK GDDVLLAISA GNRWPLVGKK QRTAGKRWAL KKHRHPPAWA SGTMPPPLLA SRASKNRTTS SMSGRFSGLA SQHLCMMFAI
1101: GLGQQRQAAG SAHTECQAAG SGTCMFSSVC GRLPAVNPGT ENKPDEQRRM IRLQS
0001: MVGGGSAQKL TTNDALAYLK AVKDKFQDQR GKYDEFLEVM KNFKSQRVDT AGVITRVKEL FKGHQELILG FNTFLPKGFE ITLQPEDGQP PLKKRVEFEE
0101: AISFVNKIKT RFQGDDRVYK SFLDILNMYR RDSKSITEVY QEVAILFRDH SDLLVEFTHF LPDTSATASI PSVKTSVRER GVSLADKKDR IITPHPDHDY
0201: GTEHIDQDRE RPIKKENKEH MRGTNKENEH RDARDFEPHS KKEQFLNKKQ KLHIRGDDPA EISNQSKLSG AVPSSSTYDE KGAMKSYSQD LAIVDRVKEK
0301: LNASEYQEFL RCLNLFSKEI ISRPELQSLV GNLIGVYPDL MDSFIEFLVQ CEKNEGLLSG ILTKSKSTYL LQGEGKYPQP SLDNDRDQEH KRDDGLRDRD
0401: HEKERLEKAA ANLKWAKPIS ELDLSNCEQC TPSYRLLPKN YPISIASQKT EIGKLVLNDH WVSVTSGSED YSFSHMRKNQ YEESLFKCED DRFELDMLLE
0501: SVNSTTKHVE ELLTKINSNE LKTNSPIRVE DHLTALNLRC IERLYGDHGL DVMDVLKKNV SLALPVILTR LKQKQEEWAR CRSDFDKVWA EIYAKNYYKS
0601: LDHRSFYFKQ QDSKKLSMKA LLAEIKEITE KKREDDSLLA FAAGNRLSIS PDLEFDYPDH DLHEDLYQLI KYSCAEMCST EQLDKVMKIW TTFVEQIFGV
0701: PSRPQGAEDQ EDVVKSMNQN VKSGSSSAGE SEGSPHNYAS VADSRRSKSS RKANEHSQLG QTSNSERDGA AGRTSDALCE TAQHEKMLKN VVTSDEKPES
0801: KQAVSIERAH DSTALAVDGL LDQSNGGSSI VHMTGHCNNN LKPVTCGTEL ELKMNDGNGP KLEVGNKKLL TNGIAVEITS DQEMAGTSKV EREEGELSPN
0901: GDFEEDNFAV YAKTDFETFS KANDSTGNNI SGDRSREGEP SCLETRAEND AEGDENAARS SEDSRNEYEN GDVSGTESGG GEDPEDDLDN NNKGESEGEA
1001: ECMADAHDAE ENGSALPVSA RFLLHVKPLV KYVPSAIALH DKDKDSLKNS QVFYGNDSFY VLFRLHRILY ERILSAKVNS SSPEGKWRTS NTKNPTDSYA
1101: RFMTALYNLL DGTSDNAKFE DDCRAIIGTQ SYILFTLDKL IHKFIKHLQV VVADEMDNKL LQLYFYEKSR RPETIFDAVY YDNTRVLLPD ENIYRIECRL
1201: STPAKLSIQL MCNGLDKPDV TSVSIDPTFA AYLHNDFLSI QPNAREDRRI YLNRNKRKVC REDEQLYSTD EVKIKNGLEC KIACGSSKVS YVLETEDLLV
1301: RVKKRRKTLC HNQDSWVRQM RLQYYKNNFL
0101: AISFVNKIKT RFQGDDRVYK SFLDILNMYR RDSKSITEVY QEVAILFRDH SDLLVEFTHF LPDTSATASI PSVKTSVRER GVSLADKKDR IITPHPDHDY
0201: GTEHIDQDRE RPIKKENKEH MRGTNKENEH RDARDFEPHS KKEQFLNKKQ KLHIRGDDPA EISNQSKLSG AVPSSSTYDE KGAMKSYSQD LAIVDRVKEK
0301: LNASEYQEFL RCLNLFSKEI ISRPELQSLV GNLIGVYPDL MDSFIEFLVQ CEKNEGLLSG ILTKSKSTYL LQGEGKYPQP SLDNDRDQEH KRDDGLRDRD
0401: HEKERLEKAA ANLKWAKPIS ELDLSNCEQC TPSYRLLPKN YPISIASQKT EIGKLVLNDH WVSVTSGSED YSFSHMRKNQ YEESLFKCED DRFELDMLLE
0501: SVNSTTKHVE ELLTKINSNE LKTNSPIRVE DHLTALNLRC IERLYGDHGL DVMDVLKKNV SLALPVILTR LKQKQEEWAR CRSDFDKVWA EIYAKNYYKS
0601: LDHRSFYFKQ QDSKKLSMKA LLAEIKEITE KKREDDSLLA FAAGNRLSIS PDLEFDYPDH DLHEDLYQLI KYSCAEMCST EQLDKVMKIW TTFVEQIFGV
0701: PSRPQGAEDQ EDVVKSMNQN VKSGSSSAGE SEGSPHNYAS VADSRRSKSS RKANEHSQLG QTSNSERDGA AGRTSDALCE TAQHEKMLKN VVTSDEKPES
0801: KQAVSIERAH DSTALAVDGL LDQSNGGSSI VHMTGHCNNN LKPVTCGTEL ELKMNDGNGP KLEVGNKKLL TNGIAVEITS DQEMAGTSKV EREEGELSPN
0901: GDFEEDNFAV YAKTDFETFS KANDSTGNNI SGDRSREGEP SCLETRAEND AEGDENAARS SEDSRNEYEN GDVSGTESGG GEDPEDDLDN NNKGESEGEA
1001: ECMADAHDAE ENGSALPVSA RFLLHVKPLV KYVPSAIALH DKDKDSLKNS QVFYGNDSFY VLFRLHRILY ERILSAKVNS SSPEGKWRTS NTKNPTDSYA
1101: RFMTALYNLL DGTSDNAKFE DDCRAIIGTQ SYILFTLDKL IHKFIKHLQV VVADEMDNKL LQLYFYEKSR RPETIFDAVY YDNTRVLLPD ENIYRIECRL
1201: STPAKLSIQL MCNGLDKPDV TSVSIDPTFA AYLHNDFLSI QPNAREDRRI YLNRNKRKVC REDEQLYSTD EVKIKNGLEC KIACGSSKVS YVLETEDLLV
1301: RVKKRRKTLC HNQDSWVRQM RLQYYKNNFL
Arabidopsis Description
SNL3SIN3-like 3 [Source:TAIR;Acc:AT1G24190]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.