Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES00449 | Sorghum | nucleus | 95.61 | 95.21 |
| Zm00001d008429_P019 | Maize | nucleus | 92.96 | 92.45 |
| Os01t0109700-01 | Rice | nucleus | 75.54 | 81.75 |
| TraesCSU01G039900.1 | Wheat | nucleus | 77.28 | 77.61 |
| TraesCS3B01G005900.1 | Wheat | nucleus | 76.66 | 76.71 |
| TraesCS3D01G007600.2 | Wheat | nucleus, plastid | 73.38 | 76.36 |
| HORVU3Hr1G000540.2 | Barley | plastid | 77.21 | 71.9 |
| GSMUA_Achr1P20690_001 | Banana | nucleus | 63.97 | 68.46 |
| GSMUA_Achr9P00800_001 | Banana | nucleus | 64.53 | 66.33 |
| GSMUA_Achr11P... | Banana | nucleus | 61.12 | 63.64 |
| GSMUA_Achr2P09580_001 | Banana | nucleus | 59.93 | 63.14 |
| VIT_01s0026g01010.t01 | Wine grape | nucleus | 62.86 | 62.16 |
| Zm00001d035776_P004 | Maize | nucleus | 53.52 | 60.9 |
| KRH69432 | Soybean | nucleus | 58.54 | 58.74 |
| KRH74716 | Soybean | nucleus | 53.1 | 57.95 |
| CDY23529 | Canola | cytosol | 6.34 | 57.59 |
| CDY48380 | Canola | cytosol | 6.27 | 56.96 |
| AT1G24200.1 | Thale cress | cytosol | 7.53 | 55.1 |
| CDY38781 | Canola | nucleus | 47.67 | 53.06 |
| Bra016241.1-P | Field mustard | nucleus | 47.6 | 52.99 |
| CDY11625 | Canola | nucleus | 47.6 | 52.95 |
| CDY23527 | Canola | nucleus | 47.53 | 52.7 |
| CDX68358 | Canola | nucleus | 47.04 | 52.57 |
| AT1G70060.2 | Thale cress | nucleus | 48.43 | 52.41 |
| CDY48381 | Canola | cytosol | 5.64 | 52.26 |
| CDY23528 | Canola | cytosol | 5.64 | 52.26 |
| Bra003968.1-P | Field mustard | cytosol | 5.64 | 52.26 |
| AT1G24190.3 | Thale cress | nucleus | 48.57 | 52.09 |
| Bra003967.1-P | Field mustard | nucleus | 46.97 | 51.25 |
| AT1G70030.1 | Thale cress | cytosol | 5.71 | 51.25 |
| Zm00001d041450_P002 | Maize | nucleus | 19.37 | 35.37 |
| Zm00001d008431_P001 | Maize | nucleus | 2.72 | 30.0 |
| Zm00001d009729_P001 | Maize | nucleus | 4.88 | 28.57 |
| Zm00001d041453_P001 | Maize | nucleus | 22.65 | 28.14 |
Protein Annotations
| Gene3D:1.20.1160.11 | EntrezGene:103649898 | MapMan:12.3.2.4.2 | UniProt:A0A1D6MNA1 | ncoils:Coil | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:HDAC_interact_dom | InterPro:IPR003822 | ProteinID:ONM30577.1 |
| ProteinID:ONM30586.1 | ProteinID:ONM30589.1 | ProteinID:ONM30594.1 | ProteinID:ONM30600.1 | ProteinID:ONM30602.1 | ProteinID:ONM30603.1 |
| ProteinID:ONM30605.1 | ProteinID:ONM30607.1 | InterPro:PAH | InterPro:PAH_sf | PFAM:PF02671 | PFAM:PF08295 |
| PFAM:PF16879 | PFscan:PS51477 | PANTHER:PTHR12346 | PANTHER:PTHR12346:SF21 | SMART:SM00761 | SUPFAM:SSF47762 |
| InterPro:Sin3_C | UniParc:UPI000221EB03 | EnsemblPlantsGene:Zm00001d040123 | EnsemblPlants:Zm00001d040123_P007 | EnsemblPlants:Zm00001d040123_T007 | SEG:seg |
Description
Paired amphipathic helix protein Sin3-like 3
Coordinates
chr3:-:28444761..28454983
Molecular Weight (calculated)
162899.0 Da
IEP (calculated)
5.706
GRAVY (calculated)
-0.849
Length
1435 amino acids
Sequence
(BLAST)
(BLAST)
0001: MKRGTRDDAL MGSQLKRSNV VRSDPSAQPQ HMSVPGSASA AAPPPQAGAA PPAQPQQPSG AAFTNQKLTT NDALVYLKAV KDKFQDKREK YEEFLEVMRD
0101: FKSERIDTNG VIVRVKTLFN GYPELILGFN AFLPKGYAIK LQEEKKPVDF VEAINFVNKI KNRFQHDEQV YKAFLDILNM YRKDNKSIQD VYHEVAMLFK
0201: DHKDLLEEFQ HFLPDTSVAP QAVASKGGLV KREDRSSLVP PANKILHNDK RDRVYLSHAD RDFSVDRPDV EHDRQRRRLD KDKERKVERD RRDYEREDKD
0301: GEHDSRDLEL GQRKRKPFSR NIEDNVGAET HQGGPSENHG IHSVSASSYD DKDALKSVYT HEFHFCEKVK EKLEHEAYQE FLKCLHIYSQ EIITRSELKN
0401: LVNDILQHYP DLMEGFNEFL EHCENIDGFL AGVFNKRPST RAVKTEDKEK DRDRDREDKD RDREKEREKE RERLDKGSTF NSKEGSSHKP SMFSGKEKYN
0501: LSKPISELDL SNCQRCTPSY RLLPKNYPMP PASNRTDLGA SVLNDHWVSV TSGSEDYSFK HMRKNQYEES LFRCEDDRFE LDMLLESVNA ATKRVEELIE
0601: KMQDNSVKPE SPIRIDEHLT PLNLRCIERL YGDHGLDVMD VLRKNASVAL PVILTRLKQK QEEWSRCRSD FNKVWAEIYA KNYHKSLDHR SFYFKQQDTK
0701: NLSTKSLLTE IKEINEKKRK EDDVLLAIAA GNRRPIVPNM SFEYIDSEIH EDLHKIIKYS CAEVCNSSDQ LDKVMRVWTT FLEPVLGVQQ KHGSEDPDLV
0801: KTKSRTTKLG LANVRESNTI AGIVSKQSNG DESEQGPSSR ARLANGVAAG TQNGFHDADR IARKGEEPSN AILNGRVHGA VSADETLSLI TQNIASTERP
0901: AENAAAVRTE QHKANLVLTP GMNASRSSHD AVEVAGEGKT GNETLLSAEG GERLGPSLNG TSEGIKGRLN NDGSVPHTSK VEREEGELSP NGDFEEDHFV
1001: PFEDGTSKGK EDSTSRPFHG RPGEVVPSSA EAAGENDADA DDEGEESAQR STEDSENASE AGEDASGSES GDGEECSRED HDEEEEDMDH DDQDAKAESE
1101: GEAEGTTETH DVEGGISLPL SERFLYSVKP LAKHVPTALH DREFSRVFYG NDSFYVLFRL HQILYERLLS AKTNSFTAEK KWRNSKDTNP PDLYAKFMSA
1201: LYNLLDGSSD NTKFEDDCRA IIGTQSYVLF TLDKLIYKVV KQLQAIATDE MDNKLLQLYL YEKSRSPGRF FDLVYHENAR VLLHDESIYR FECCSSPTRL
1301: SIQLMEYGHE KPEVTAVSIE PNFSSYLFSE YLCSTPDKKL SEGVYLGRNK RKYSNNDEPS DSLKAMDGIN VVNGLECKIS CKTSKVSYVL DTEDFLFRLR
1401: KRRKILRGGN VPDRLQISSI SAAKVQRFNR FLSKP
0101: FKSERIDTNG VIVRVKTLFN GYPELILGFN AFLPKGYAIK LQEEKKPVDF VEAINFVNKI KNRFQHDEQV YKAFLDILNM YRKDNKSIQD VYHEVAMLFK
0201: DHKDLLEEFQ HFLPDTSVAP QAVASKGGLV KREDRSSLVP PANKILHNDK RDRVYLSHAD RDFSVDRPDV EHDRQRRRLD KDKERKVERD RRDYEREDKD
0301: GEHDSRDLEL GQRKRKPFSR NIEDNVGAET HQGGPSENHG IHSVSASSYD DKDALKSVYT HEFHFCEKVK EKLEHEAYQE FLKCLHIYSQ EIITRSELKN
0401: LVNDILQHYP DLMEGFNEFL EHCENIDGFL AGVFNKRPST RAVKTEDKEK DRDRDREDKD RDREKEREKE RERLDKGSTF NSKEGSSHKP SMFSGKEKYN
0501: LSKPISELDL SNCQRCTPSY RLLPKNYPMP PASNRTDLGA SVLNDHWVSV TSGSEDYSFK HMRKNQYEES LFRCEDDRFE LDMLLESVNA ATKRVEELIE
0601: KMQDNSVKPE SPIRIDEHLT PLNLRCIERL YGDHGLDVMD VLRKNASVAL PVILTRLKQK QEEWSRCRSD FNKVWAEIYA KNYHKSLDHR SFYFKQQDTK
0701: NLSTKSLLTE IKEINEKKRK EDDVLLAIAA GNRRPIVPNM SFEYIDSEIH EDLHKIIKYS CAEVCNSSDQ LDKVMRVWTT FLEPVLGVQQ KHGSEDPDLV
0801: KTKSRTTKLG LANVRESNTI AGIVSKQSNG DESEQGPSSR ARLANGVAAG TQNGFHDADR IARKGEEPSN AILNGRVHGA VSADETLSLI TQNIASTERP
0901: AENAAAVRTE QHKANLVLTP GMNASRSSHD AVEVAGEGKT GNETLLSAEG GERLGPSLNG TSEGIKGRLN NDGSVPHTSK VEREEGELSP NGDFEEDHFV
1001: PFEDGTSKGK EDSTSRPFHG RPGEVVPSSA EAAGENDADA DDEGEESAQR STEDSENASE AGEDASGSES GDGEECSRED HDEEEEDMDH DDQDAKAESE
1101: GEAEGTTETH DVEGGISLPL SERFLYSVKP LAKHVPTALH DREFSRVFYG NDSFYVLFRL HQILYERLLS AKTNSFTAEK KWRNSKDTNP PDLYAKFMSA
1201: LYNLLDGSSD NTKFEDDCRA IIGTQSYVLF TLDKLIYKVV KQLQAIATDE MDNKLLQLYL YEKSRSPGRF FDLVYHENAR VLLHDESIYR FECCSSPTRL
1301: SIQLMEYGHE KPEVTAVSIE PNFSSYLFSE YLCSTPDKKL SEGVYLGRNK RKYSNNDEPS DSLKAMDGIN VVNGLECKIS CKTSKVSYVL DTEDFLFRLR
1401: KRRKILRGGN VPDRLQISSI SAAKVQRFNR FLSKP
0001: MVGGGSAQKL TTNDALAYLK AVKDKFQDQR GKYDEFLEVM KNFKSQRVDT AGVITRVKEL FKGHQELILG FNTFLPKGFE ITLQPEDGQP PLKKRVEFEE
0101: AISFVNKIKT RFQGDDRVYK SFLDILNMYR RDSKSITEVY QEVAILFRDH SDLLVEFTHF LPDTSATASI PSVKTSVRER GVSLADKKDR IITPHPDHDY
0201: GTEHIDQDRE RPIKKENKEH MRGTNKENEH RDARDFEPHS KKEQFLNKKQ KLHIRGDDPA EISNQSKLSG AVPSSSTYDE KGAMKSYSQD LAIVDRVKEK
0301: LNASEYQEFL RCLNLFSKEI ISRPELQSLV GNLIGVYPDL MDSFIEFLVQ CEKNEGLLSG ILTKSKSTYL LQGEGKYPQP SLDNDRDQEH KRDDGLRDRD
0401: HEKERLEKAA ANLKWAKPIS ELDLSNCEQC TPSYRLLPKN YPISIASQKT EIGKLVLNDH WVSVTSGSED YSFSHMRKNQ YEESLFKCED DRFELDMLLE
0501: SVNSTTKHVE ELLTKINSNE LKTNSPIRVE DHLTALNLRC IERLYGDHGL DVMDVLKKNV SLALPVILTR LKQKQEEWAR CRSDFDKVWA EIYAKNYYKS
0601: LDHRSFYFKQ QDSKKLSMKA LLAEIKEITE KKREDDSLLA FAAGNRLSIS PDLEFDYPDH DLHEDLYQLI KYSCAEMCST EQLDKVMKIW TTFVEQIFGV
0701: PSRPQGAEDQ EDVVKSMNQN VKSGSSSAGE SEGSPHNYAS VADSRRSKSS RKANEHSQLG QTSNSERDGA AGRTSDALCE TAQHEKMLKN VVTSDEKPES
0801: KQAVSIERAH DSTALAVDGL LDQSNGGSSI VHMTGHCNNN LKPVTCGTEL ELKMNDGNGP KLEVGNKKLL TNGIAVEITS DQEMAGTSKV EREEGELSPN
0901: GDFEEDNFAV YAKTDFETFS KANDSTGNNI SGDRSREGEP SCLETRAEND AEGDENAARS SEDSRNEYEN GDVSGTESGG GEDPEDDLDN NNKGESEGEA
1001: ECMADAHDAE ENGSALPVSA RFLLHVKPLV KYVPSAIALH DKDKDSLKNS QVFYGNDSFY VLFRLHRILY ERILSAKVNS SSPEGKWRTS NTKNPTDSYA
1101: RFMTALYNLL DGTSDNAKFE DDCRAIIGTQ SYILFTLDKL IHKFIKHLQV VVADEMDNKL LQLYFYEKSR RPETIFDAVY YDNTRVLLPD ENIYRIECRL
1201: STPAKLSIQL MCNGLDKPDV TSVSIDPTFA AYLHNDFLSI QPNAREDRRI YLNRNKRKVC REDEQLYSTD EVKIKNGLEC KIACGSSKVS YVLETEDLLV
1301: RVKKRRKTLC HNQDSWVRQM RLQYYKNNFL
0101: AISFVNKIKT RFQGDDRVYK SFLDILNMYR RDSKSITEVY QEVAILFRDH SDLLVEFTHF LPDTSATASI PSVKTSVRER GVSLADKKDR IITPHPDHDY
0201: GTEHIDQDRE RPIKKENKEH MRGTNKENEH RDARDFEPHS KKEQFLNKKQ KLHIRGDDPA EISNQSKLSG AVPSSSTYDE KGAMKSYSQD LAIVDRVKEK
0301: LNASEYQEFL RCLNLFSKEI ISRPELQSLV GNLIGVYPDL MDSFIEFLVQ CEKNEGLLSG ILTKSKSTYL LQGEGKYPQP SLDNDRDQEH KRDDGLRDRD
0401: HEKERLEKAA ANLKWAKPIS ELDLSNCEQC TPSYRLLPKN YPISIASQKT EIGKLVLNDH WVSVTSGSED YSFSHMRKNQ YEESLFKCED DRFELDMLLE
0501: SVNSTTKHVE ELLTKINSNE LKTNSPIRVE DHLTALNLRC IERLYGDHGL DVMDVLKKNV SLALPVILTR LKQKQEEWAR CRSDFDKVWA EIYAKNYYKS
0601: LDHRSFYFKQ QDSKKLSMKA LLAEIKEITE KKREDDSLLA FAAGNRLSIS PDLEFDYPDH DLHEDLYQLI KYSCAEMCST EQLDKVMKIW TTFVEQIFGV
0701: PSRPQGAEDQ EDVVKSMNQN VKSGSSSAGE SEGSPHNYAS VADSRRSKSS RKANEHSQLG QTSNSERDGA AGRTSDALCE TAQHEKMLKN VVTSDEKPES
0801: KQAVSIERAH DSTALAVDGL LDQSNGGSSI VHMTGHCNNN LKPVTCGTEL ELKMNDGNGP KLEVGNKKLL TNGIAVEITS DQEMAGTSKV EREEGELSPN
0901: GDFEEDNFAV YAKTDFETFS KANDSTGNNI SGDRSREGEP SCLETRAEND AEGDENAARS SEDSRNEYEN GDVSGTESGG GEDPEDDLDN NNKGESEGEA
1001: ECMADAHDAE ENGSALPVSA RFLLHVKPLV KYVPSAIALH DKDKDSLKNS QVFYGNDSFY VLFRLHRILY ERILSAKVNS SSPEGKWRTS NTKNPTDSYA
1101: RFMTALYNLL DGTSDNAKFE DDCRAIIGTQ SYILFTLDKL IHKFIKHLQV VVADEMDNKL LQLYFYEKSR RPETIFDAVY YDNTRVLLPD ENIYRIECRL
1201: STPAKLSIQL MCNGLDKPDV TSVSIDPTFA AYLHNDFLSI QPNAREDRRI YLNRNKRKVC REDEQLYSTD EVKIKNGLEC KIACGSSKVS YVLETEDLLV
1301: RVKKRRKTLC HNQDSWVRQM RLQYYKNNFL
Arabidopsis Description
SNL3SIN3-like 3 [Source:TAIR;Acc:AT1G24190]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.