Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES00449 | Sorghum | nucleus | 83.86 | 77.17 |
| Zm00001d008429_P019 | Maize | nucleus | 82.5 | 75.81 |
| Zm00001d040123_P007 | Maize | nucleus | 81.75 | 75.54 |
| TraesCSU01G039900.1 | Wheat | nucleus | 79.49 | 73.76 |
| TraesCS3B01G005900.1 | Wheat | nucleus | 78.81 | 72.87 |
| TraesCS3D01G007600.2 | Wheat | nucleus, plastid | 74.36 | 71.5 |
| HORVU3Hr1G000540.2 | Barley | plastid | 79.41 | 68.33 |
| GSMUA_Achr1P20690_001 | Banana | nucleus | 64.4 | 63.68 |
| GSMUA_Achr9P00800_001 | Banana | nucleus | 64.71 | 61.46 |
| GSMUA_Achr11P... | Banana | nucleus | 61.92 | 59.58 |
| GSMUA_Achr2P09580_001 | Banana | nucleus | 60.11 | 58.52 |
| VIT_01s0026g01010.t01 | Wine grape | nucleus | 63.05 | 57.62 |
| KRH69432 | Soybean | nucleus | 59.05 | 54.76 |
| KRH74716 | Soybean | nucleus | 52.94 | 53.38 |
| Os05t0100500-01 | Rice | plastid | 14.48 | 52.17 |
| CDY38781 | Canola | nucleus | 49.62 | 51.05 |
| Bra016241.1-P | Field mustard | nucleus | 49.55 | 50.97 |
| CDY11625 | Canola | nucleus | 49.47 | 50.85 |
| CDX68358 | Canola | nucleus | 49.09 | 50.7 |
| CDY23527 | Canola | nucleus | 49.47 | 50.7 |
| AT1G70060.2 | Thale cress | nucleus | 50.45 | 50.45 |
| AT1G24190.3 | Thale cress | nucleus | 50.53 | 50.07 |
| Bra003967.1-P | Field mustard | nucleus | 49.02 | 49.43 |
| CDY23529 | Canola | cytosol | 5.51 | 46.2 |
| CDY48380 | Canola | cytosol | 5.43 | 45.57 |
| AT1G24200.1 | Thale cress | cytosol | 6.33 | 42.86 |
| AT1G70030.1 | Thale cress | cytosol | 4.83 | 40.0 |
| CDY48381 | Canola | cytosol | 4.6 | 39.35 |
| CDY23528 | Canola | cytosol | 4.6 | 39.35 |
| Bra003968.1-P | Field mustard | cytosol | 4.6 | 39.35 |
| Os05t0588700-01 | Rice | nucleus | 17.5 | 27.04 |
Protein Annotations
| Gene3D:1.20.1160.11 | MapMan:12.3.2.4.2 | ProteinID:BAF03709.1 | ProteinID:BAS70002.1 | ncoils:Coil | GO:GO:0000118 |
| GO:GO:0000122 | GO:GO:0000785 | GO:GO:0001106 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004407 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005654 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0016043 | GO:GO:0016575 | GO:GO:0016787 | GO:GO:0019538 | InterPro:HDAC_interact_dom | InterPro:IPR003822 |
| EnsemblPlantsGene:Os01g0109700 | EnsemblPlants:Os01t0109700-01 | InterPro:PAH | InterPro:PAH_sf | PFAM:PF02671 | PFAM:PF08295 |
| PFAM:PF16879 | PFscan:PS51477 | PANTHER:PTHR12346 | PANTHER:PTHR12346:SF21 | UniProt:Q0JRB9 | SMART:SM00761 |
| SUPFAM:SSF47762 | InterPro:Sin3_C | UniParc:UPI0000DD890E | SEG:seg | : | : |
Description
Similar to Paired amphipathic helix repeat-containing protein / transcription regulator-related. (Os01t0109700-01)
Coordinates
chr1:-:513890..522448
Molecular Weight (calculated)
149534.0 Da
IEP (calculated)
5.554
GRAVY (calculated)
-0.810
Length
1326 amino acids
Sequence
(BLAST)
(BLAST)
0001: VMRDFKSERI DTNGVIIRVK TLFNGYPELI LGFNTFLPKG YAIKLQEEKK PVDFVEAINF VNKIKNRFQH DEHVYKAFLD ILNMYRKDNK SIQDVYHEVA
0101: VLFADHKDLL EEFQHFLPDT SVPPQAVAPS RPGIRRDDRT SLVPPASRNE KRDKAHPHAD RESVDRPDLD HVIQRRRPKD RHDYDRGDKD GELDSKDLDI
0201: GLKRKPFPRK MEDPTSADAH HGGPLENHGI LGASASLYDN KDALKSVYTQ EFHFCEKVKE KLEHDAYQEF LKCLHIYSQE IITRSELKNL VNDILQQHPD
0301: LMDGFNEFLE HCENIDGFLA GVFSKRQTGR IVKTEERKEG GKGTEKEPDR IEKVPAYKEA PSQKPVFSSK EKYIYKPVSE LDLSNCQRCT PSYRLLPKHY
0401: PMPPAGNKTE LGASVLNDHW VSVTSGSEDY SFKHMRKNQY EESLFRCEDD RFELDMLLES VNAATKRVEE LIEKMQDNSL KPDSPIRIDE HLTPLNLRCI
0501: ERLYGDHGLD VMDVLRKNAS VALPVILTRL KQKQEEWSRC RSDFNKVWAE IYAKNYHKSL DHRSFYFKQQ DTKNLSTKSL LTEIKEINEK KRKEDDVLLA
0601: IAAGNRRPIV PNMSFDYVDS NIHEDMYKII KYSCGEVCSS SDQLDKVVRI WTTFLEPILG VQPRTHGAED ADAVKPKSRT TKSGLATVGE INTTAAGAVA
0701: KHGHDENIPQ EQTPSSLARM VNGVATDTQN GFHDVDRTAR RAEEPSNTAV NGRVQGASPG TNEIPAVSTQ NMPTERSAEN IPVARTEQHG NAKANLEPTS
0801: GVNASRSSHA GNDTAAEARA GNETLPSVEG GETGRSGSTL NGGGASEGNK GRLFNEASAS HNTPKVEREE GELSPNGDFE EDNFAPFEDG AVDGVSKAKE
0901: GSTSRPFQGR SGEAQPSCAE AAGENDADAD DEGEESAQRS TEDSENASEG GEDASGSESG DGEECSREDH DEEEEDMDHD DQDAKAESEG EAEGTTETHD
1001: VEGGISLPLS ERFLHSVKPL AKHVPTALHD RDEKSSRIFY GNDSFYVLFR LHQILYERLL SAKTNSSSAE KKWRTSKDTN PPDLYAKFIS ALYNLLDGSS
1101: DNTKFEDDCR SIIGTQSYVL FTLDKLIYKV VKQLQAIATD EMDNKLLQLY LYEKSRSPGR FFDLVYHENA RVLLHEESIY RFECCSNPTK LSIQLMEYGH
1201: EKPEVTAVSI DPNFSSYLFN EYLSSMSDRK LSEGVFLERN KRKHSNNDEP SDSLKAMDGV KVANGLECKI SCKTSKVSYV LDTEDFLFRL RKRRRFSPVG
1301: NVPEKLQASK TYAAKVQRFH RFLSKP
0101: VLFADHKDLL EEFQHFLPDT SVPPQAVAPS RPGIRRDDRT SLVPPASRNE KRDKAHPHAD RESVDRPDLD HVIQRRRPKD RHDYDRGDKD GELDSKDLDI
0201: GLKRKPFPRK MEDPTSADAH HGGPLENHGI LGASASLYDN KDALKSVYTQ EFHFCEKVKE KLEHDAYQEF LKCLHIYSQE IITRSELKNL VNDILQQHPD
0301: LMDGFNEFLE HCENIDGFLA GVFSKRQTGR IVKTEERKEG GKGTEKEPDR IEKVPAYKEA PSQKPVFSSK EKYIYKPVSE LDLSNCQRCT PSYRLLPKHY
0401: PMPPAGNKTE LGASVLNDHW VSVTSGSEDY SFKHMRKNQY EESLFRCEDD RFELDMLLES VNAATKRVEE LIEKMQDNSL KPDSPIRIDE HLTPLNLRCI
0501: ERLYGDHGLD VMDVLRKNAS VALPVILTRL KQKQEEWSRC RSDFNKVWAE IYAKNYHKSL DHRSFYFKQQ DTKNLSTKSL LTEIKEINEK KRKEDDVLLA
0601: IAAGNRRPIV PNMSFDYVDS NIHEDMYKII KYSCGEVCSS SDQLDKVVRI WTTFLEPILG VQPRTHGAED ADAVKPKSRT TKSGLATVGE INTTAAGAVA
0701: KHGHDENIPQ EQTPSSLARM VNGVATDTQN GFHDVDRTAR RAEEPSNTAV NGRVQGASPG TNEIPAVSTQ NMPTERSAEN IPVARTEQHG NAKANLEPTS
0801: GVNASRSSHA GNDTAAEARA GNETLPSVEG GETGRSGSTL NGGGASEGNK GRLFNEASAS HNTPKVEREE GELSPNGDFE EDNFAPFEDG AVDGVSKAKE
0901: GSTSRPFQGR SGEAQPSCAE AAGENDADAD DEGEESAQRS TEDSENASEG GEDASGSESG DGEECSREDH DEEEEDMDHD DQDAKAESEG EAEGTTETHD
1001: VEGGISLPLS ERFLHSVKPL AKHVPTALHD RDEKSSRIFY GNDSFYVLFR LHQILYERLL SAKTNSSSAE KKWRTSKDTN PPDLYAKFIS ALYNLLDGSS
1101: DNTKFEDDCR SIIGTQSYVL FTLDKLIYKV VKQLQAIATD EMDNKLLQLY LYEKSRSPGR FFDLVYHENA RVLLHEESIY RFECCSNPTK LSIQLMEYGH
1201: EKPEVTAVSI DPNFSSYLFN EYLSSMSDRK LSEGVFLERN KRKHSNNDEP SDSLKAMDGV KVANGLECKI SCKTSKVSYV LDTEDFLFRL RKRRRFSPVG
1301: NVPEKLQASK TYAAKVQRFH RFLSKP
0001: MVGGGSAQKL TTNDALAYLK AVKDKFQDQR GKYDEFLEVM KNFKSQRVDT AGVITRVKEL FKGHQELILG FNTFLPKGFE ITLQPEDGQP PLKKRVEFEE
0101: AISFVNKIKT RFQGDDRVYK SFLDILNMYR RDSKSITEVY QEVAILFRDH SDLLVEFTHF LPDTSATASI PSVKTSVRER GVSLADKKDR IITPHPDHDY
0201: GTEHIDQDRE RPIKKENKEH MRGTNKENEH RDARDFEPHS KKEQFLNKKQ KLHIRGDDPA EISNQSKLSG AVPSSSTYDE KGAMKSYSQD LAIVDRVKEK
0301: LNASEYQEFL RCLNLFSKEI ISRPELQSLV GNLIGVYPDL MDSFIEFLVQ CEKNEGLLSG ILTKSKSTYL LQGEGKYPQP SLDNDRDQEH KRDDGLRDRD
0401: HEKERLEKAA ANLKWAKPIS ELDLSNCEQC TPSYRLLPKN YPISIASQKT EIGKLVLNDH WVSVTSGSED YSFSHMRKNQ YEESLFKCED DRFELDMLLE
0501: SVNSTTKHVE ELLTKINSNE LKTNSPIRVE DHLTALNLRC IERLYGDHGL DVMDVLKKNV SLALPVILTR LKQKQEEWAR CRSDFDKVWA EIYAKNYYKS
0601: LDHRSFYFKQ QDSKKLSMKA LLAEIKEITE KKREDDSLLA FAAGNRLSIS PDLEFDYPDH DLHEDLYQLI KYSCAEMCST EQLDKVMKIW TTFVEQIFGV
0701: PSRPQGAEDQ EDVVKSMNQN VKSGSSSAGE SEGSPHNYAS VADSRRSKSS RKANEHSQLG QTSNSERDGA AGRTSDALCE TAQHEKMLKN VVTSDEKPES
0801: KQAVSIERAH DSTALAVDGL LDQSNGGSSI VHMTGHCNNN LKPVTCGTEL ELKMNDGNGP KLEVGNKKLL TNGIAVEITS DQEMAGTSKV EREEGELSPN
0901: GDFEEDNFAV YAKTDFETFS KANDSTGNNI SGDRSREGEP SCLETRAEND AEGDENAARS SEDSRNEYEN GDVSGTESGG GEDPEDDLDN NNKGESEGEA
1001: ECMADAHDAE ENGSALPVSA RFLLHVKPLV KYVPSAIALH DKDKDSLKNS QVFYGNDSFY VLFRLHRILY ERILSAKVNS SSPEGKWRTS NTKNPTDSYA
1101: RFMTALYNLL DGTSDNAKFE DDCRAIIGTQ SYILFTLDKL IHKFIKHLQV VVADEMDNKL LQLYFYEKSR RPETIFDAVY YDNTRVLLPD ENIYRIECRL
1201: STPAKLSIQL MCNGLDKPDV TSVSIDPTFA AYLHNDFLSI QPNAREDRRI YLNRNKRKVC REDEQLYSTD EVKIKNGLEC KIACGSSKVS YVLETEDLLV
1301: RVKKRRKTLC HNQDSWVRQM RLQYYKNNFL
0101: AISFVNKIKT RFQGDDRVYK SFLDILNMYR RDSKSITEVY QEVAILFRDH SDLLVEFTHF LPDTSATASI PSVKTSVRER GVSLADKKDR IITPHPDHDY
0201: GTEHIDQDRE RPIKKENKEH MRGTNKENEH RDARDFEPHS KKEQFLNKKQ KLHIRGDDPA EISNQSKLSG AVPSSSTYDE KGAMKSYSQD LAIVDRVKEK
0301: LNASEYQEFL RCLNLFSKEI ISRPELQSLV GNLIGVYPDL MDSFIEFLVQ CEKNEGLLSG ILTKSKSTYL LQGEGKYPQP SLDNDRDQEH KRDDGLRDRD
0401: HEKERLEKAA ANLKWAKPIS ELDLSNCEQC TPSYRLLPKN YPISIASQKT EIGKLVLNDH WVSVTSGSED YSFSHMRKNQ YEESLFKCED DRFELDMLLE
0501: SVNSTTKHVE ELLTKINSNE LKTNSPIRVE DHLTALNLRC IERLYGDHGL DVMDVLKKNV SLALPVILTR LKQKQEEWAR CRSDFDKVWA EIYAKNYYKS
0601: LDHRSFYFKQ QDSKKLSMKA LLAEIKEITE KKREDDSLLA FAAGNRLSIS PDLEFDYPDH DLHEDLYQLI KYSCAEMCST EQLDKVMKIW TTFVEQIFGV
0701: PSRPQGAEDQ EDVVKSMNQN VKSGSSSAGE SEGSPHNYAS VADSRRSKSS RKANEHSQLG QTSNSERDGA AGRTSDALCE TAQHEKMLKN VVTSDEKPES
0801: KQAVSIERAH DSTALAVDGL LDQSNGGSSI VHMTGHCNNN LKPVTCGTEL ELKMNDGNGP KLEVGNKKLL TNGIAVEITS DQEMAGTSKV EREEGELSPN
0901: GDFEEDNFAV YAKTDFETFS KANDSTGNNI SGDRSREGEP SCLETRAEND AEGDENAARS SEDSRNEYEN GDVSGTESGG GEDPEDDLDN NNKGESEGEA
1001: ECMADAHDAE ENGSALPVSA RFLLHVKPLV KYVPSAIALH DKDKDSLKNS QVFYGNDSFY VLFRLHRILY ERILSAKVNS SSPEGKWRTS NTKNPTDSYA
1101: RFMTALYNLL DGTSDNAKFE DDCRAIIGTQ SYILFTLDKL IHKFIKHLQV VVADEMDNKL LQLYFYEKSR RPETIFDAVY YDNTRVLLPD ENIYRIECRL
1201: STPAKLSIQL MCNGLDKPDV TSVSIDPTFA AYLHNDFLSI QPNAREDRRI YLNRNKRKVC REDEQLYSTD EVKIKNGLEC KIACGSSKVS YVLETEDLLV
1301: RVKKRRKTLC HNQDSWVRQM RLQYYKNNFL
Arabidopsis Description
SNL3SIN3-like 3 [Source:TAIR;Acc:AT1G24190]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.