Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 1
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCSU01G039900.1 | Wheat | nucleus | 97.56 | 97.9 |
| TraesCS3D01G007600.2 | Wheat | nucleus, plastid | 92.19 | 95.87 |
| HORVU3Hr1G000540.2 | Barley | plastid | 93.44 | 86.96 |
| Os01t0109700-01 | Rice | nucleus | 72.87 | 78.81 |
| EES00449 | Sorghum | nucleus | 77.96 | 77.58 |
| Zm00001d040123_P007 | Maize | nucleus | 76.71 | 76.66 |
| Zm00001d008429_P019 | Maize | nucleus | 76.5 | 76.02 |
| TraesCS1B01G002000.1 | Wheat | nucleus | 62.76 | 69.39 |
| GSMUA_Achr1P20690_001 | Banana | nucleus | 60.32 | 64.5 |
| GSMUA_Achr9P00800_001 | Banana | nucleus | 60.53 | 62.18 |
| GSMUA_Achr11P... | Banana | nucleus | 57.39 | 59.72 |
| GSMUA_Achr2P09580_001 | Banana | nucleus | 56.69 | 59.69 |
| VIT_01s0026g01010.t01 | Wine grape | nucleus | 59.62 | 58.92 |
| CDY23529 | Canola | cytosol | 6.49 | 58.86 |
| CDY48380 | Canola | cytosol | 6.35 | 57.59 |
| KRH69432 | Soybean | nucleus | 54.95 | 55.1 |
| KRH74716 | Soybean | nucleus | 50.49 | 55.06 |
| AT1G70030.1 | Thale cress | cytosol | 6.07 | 54.38 |
| AT1G24200.1 | Thale cress | cytosol | 7.39 | 54.08 |
| Bra003968.1-P | Field mustard | cytosol | 5.72 | 52.9 |
| CDY23528 | Canola | cytosol | 5.72 | 52.9 |
| CDY48381 | Canola | cytosol | 5.72 | 52.9 |
| CDY38781 | Canola | nucleus | 46.58 | 51.82 |
| Bra016241.1-P | Field mustard | nucleus | 46.51 | 51.75 |
| CDY11625 | Canola | nucleus | 46.51 | 51.71 |
| AT1G70060.2 | Thale cress | nucleus | 47.7 | 51.58 |
| CDX68358 | Canola | nucleus | 46.03 | 51.4 |
| AT1G24190.3 | Thale cress | nucleus | 47.91 | 51.35 |
| CDY23527 | Canola | nucleus | 46.16 | 51.16 |
| Bra003967.1-P | Field mustard | nucleus | 45.96 | 50.11 |
| TraesCS1B01G464000.1 | Wheat | nucleus | 14.85 | 25.72 |
| TraesCS1B01G463900.1 | Wheat | nucleus | 13.46 | 24.74 |
Protein Annotations
| Gene3D:1.20.1160.11 | MapMan:12.3.2.4.2 | ncoils:Coil | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:HDAC_interact_dom | InterPro:IPR003822 | InterPro:PAH |
| InterPro:PAH_sf | PFAM:PF02671 | PFAM:PF08295 | PFAM:PF16879 | PFscan:PS51477 | PANTHER:PTHR12346 |
| PANTHER:PTHR12346:SF21 | SMART:SM00761 | SUPFAM:SSF47762 | InterPro:Sin3_C | EnsemblPlantsGene:TraesCS3B01G005900 | EnsemblPlants:TraesCS3B01G005900.1 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr3B:+:3234393..3241993
Molecular Weight (calculated)
160289.0 Da
IEP (calculated)
5.940
GRAVY (calculated)
-0.773
Length
1434 amino acids
Sequence
(BLAST)
(BLAST)
0001: MKLSREDALA AAGSQPSKRI STSSTAAAAV ARSDPSPPQP MPPAGSGSAL VPAPPPQAVA ALPAQPSGVS GAATAAAAAA AGQKLTTNDA LVYLKAVKDK
0101: FQDNRAKYEE FLEVMRDFKS ERIDTNGVII RVKTLFNGYP ELILGFNTFL PKGFAIRLQQ DEKKPVDFAE AINFVNKIKS RFQRDEHVYK SFLDILNMYR
0201: KDNKSIQDVY HEVAVLFSDH KDLLEEFQHF LPDTSASPQA GTAPRGGLVK REALMPPASR GHIEKPRAFP SHTDRDASVD RPDVDHDRQR QREKNKERKA
0301: ERDRREYDRD EKDVEQDSKE LDVGQRKRKP FPSANLAGAE AHQGSHPEIH GINSASASSY DNKDALKSGY TQEFHFCEKV KEKLEYDAYQ EFLKCLHIYS
0401: QEIITRSELK NLVSDILQHY PDLMDGFNEF LEHCENIDGF LAGVFSKKQP GRLIKTEDKE RDKEHEREDR NRDRDKEREK ERERLHPKEG PSQKPSIVKE
0501: KYLCKPISEL DLSDCQRCTP SYRLLPKNYP MPPAGNKTDL GASVLNDHWV SVTSGSEDYS FKHMRKNQYE ESLFRCEDDR FELDMLLESV NAATKRVEEL
0601: IEKMQDNLVK PESPIRIDEH LTSLNLRCIE RLYGDHGLDV MDVLRRNASV ALPVILSRLK QKQEEWSRCR SDFNKVWADI YAKNYHKSLD HRSFYFKQQD
0701: SKNLSTRSLV TEIKEINEKK RKEDDVLIAI AAGNRRPIVP NMSFEYVDAN IHDDLYKIVK YSCGEVCGSD QLDKVMKIWT TFLEPILGIP SRSHGAVDAD
0801: LTKPKSGITK SGIANVAESN TTSLDGVAAQ QGHGDESMQQ EQAPSAVARL SRLVKGVAAD SQNGSHDADR TARRDEEASN AALNEVSAVS TQNLPTERSA
0901: GQHSHMKGNS ETTPGVNASK SSHAGVSMAA GARAGHEVLP STEGGETGKS GSSLNGGATS EGTKGRLFNE AAASHNTSKV EREEGELSPN GDFEEDNFVV
1001: PFEDGASKTK EGSTSRTFKV RPGQVEPHAE AAGENDADDE ESTQRSTEDS ENASEAGEDA SGSESGDGGH GSPEDHDEEE DMDHDQDAKA ESEGEAEGTT
1101: ETHDVEGGMS LLGISLPSSE RFLYSAKPLA KHVPTSLHGR EDRSSHVFYG NDSFYILFRL HQMLYERLLS AKTNSSSAEK KWRTSKDTNP PDLYARFIKA
1201: LYNLLDGTSD NTKFEDDCRA IIGTQSYVLF TLDKLIYKVV KQLQAIATDE MDSKLLQLYM YEKSRSPGRF FDLVYHENAR VLLHDESMYR FECFSSPMRL
1301: SIQLMEYGHE KPEVTAVSIE PNFASYLFSE YLSNSSGTML PEGVFLGRNK RKHSNDGEPS DSLKAMDGIK VANGLECKIS CKTSKVSYVL DTEDFLFRLR
1401: KRRFSPGGNV ADNSPTSKKY DPKVQRFHLF LSKP
0101: FQDNRAKYEE FLEVMRDFKS ERIDTNGVII RVKTLFNGYP ELILGFNTFL PKGFAIRLQQ DEKKPVDFAE AINFVNKIKS RFQRDEHVYK SFLDILNMYR
0201: KDNKSIQDVY HEVAVLFSDH KDLLEEFQHF LPDTSASPQA GTAPRGGLVK REALMPPASR GHIEKPRAFP SHTDRDASVD RPDVDHDRQR QREKNKERKA
0301: ERDRREYDRD EKDVEQDSKE LDVGQRKRKP FPSANLAGAE AHQGSHPEIH GINSASASSY DNKDALKSGY TQEFHFCEKV KEKLEYDAYQ EFLKCLHIYS
0401: QEIITRSELK NLVSDILQHY PDLMDGFNEF LEHCENIDGF LAGVFSKKQP GRLIKTEDKE RDKEHEREDR NRDRDKEREK ERERLHPKEG PSQKPSIVKE
0501: KYLCKPISEL DLSDCQRCTP SYRLLPKNYP MPPAGNKTDL GASVLNDHWV SVTSGSEDYS FKHMRKNQYE ESLFRCEDDR FELDMLLESV NAATKRVEEL
0601: IEKMQDNLVK PESPIRIDEH LTSLNLRCIE RLYGDHGLDV MDVLRRNASV ALPVILSRLK QKQEEWSRCR SDFNKVWADI YAKNYHKSLD HRSFYFKQQD
0701: SKNLSTRSLV TEIKEINEKK RKEDDVLIAI AAGNRRPIVP NMSFEYVDAN IHDDLYKIVK YSCGEVCGSD QLDKVMKIWT TFLEPILGIP SRSHGAVDAD
0801: LTKPKSGITK SGIANVAESN TTSLDGVAAQ QGHGDESMQQ EQAPSAVARL SRLVKGVAAD SQNGSHDADR TARRDEEASN AALNEVSAVS TQNLPTERSA
0901: GQHSHMKGNS ETTPGVNASK SSHAGVSMAA GARAGHEVLP STEGGETGKS GSSLNGGATS EGTKGRLFNE AAASHNTSKV EREEGELSPN GDFEEDNFVV
1001: PFEDGASKTK EGSTSRTFKV RPGQVEPHAE AAGENDADDE ESTQRSTEDS ENASEAGEDA SGSESGDGGH GSPEDHDEEE DMDHDQDAKA ESEGEAEGTT
1101: ETHDVEGGMS LLGISLPSSE RFLYSAKPLA KHVPTSLHGR EDRSSHVFYG NDSFYILFRL HQMLYERLLS AKTNSSSAEK KWRTSKDTNP PDLYARFIKA
1201: LYNLLDGTSD NTKFEDDCRA IIGTQSYVLF TLDKLIYKVV KQLQAIATDE MDSKLLQLYM YEKSRSPGRF FDLVYHENAR VLLHDESMYR FECFSSPMRL
1301: SIQLMEYGHE KPEVTAVSIE PNFASYLFSE YLSNSSGTML PEGVFLGRNK RKHSNDGEPS DSLKAMDGIK VANGLECKIS CKTSKVSYVL DTEDFLFRLR
1401: KRRFSPGGNV ADNSPTSKKY DPKVQRFHLF LSKP
0001: MVGGGSAQKL TTNDALAYLK AVKDKFQDQR GKYDEFLEVM KNFKSQRVDT AGVITRVKEL FKGHQELILG FNTFLPKGFE ITLQPEDGQP PLKKRVEFEE
0101: AISFVNKIKT RFQGDDRVYK SFLDILNMYR RDSKSITEVY QEVAILFRDH SDLLVEFTHF LPDTSATASI PSVKTSVRER GVSLADKKDR IITPHPDHDY
0201: GTEHIDQDRE RPIKKENKEH MRGTNKENEH RDARDFEPHS KKEQFLNKKQ KLHIRGDDPA EISNQSKLSG AVPSSSTYDE KGAMKSYSQD LAIVDRVKEK
0301: LNASEYQEFL RCLNLFSKEI ISRPELQSLV GNLIGVYPDL MDSFIEFLVQ CEKNEGLLSG ILTKSKSTYL LQGEGKYPQP SLDNDRDQEH KRDDGLRDRD
0401: HEKERLEKAA ANLKWAKPIS ELDLSNCEQC TPSYRLLPKN YPISIASQKT EIGKLVLNDH WVSVTSGSED YSFSHMRKNQ YEESLFKCED DRFELDMLLE
0501: SVNSTTKHVE ELLTKINSNE LKTNSPIRVE DHLTALNLRC IERLYGDHGL DVMDVLKKNV SLALPVILTR LKQKQEEWAR CRSDFDKVWA EIYAKNYYKS
0601: LDHRSFYFKQ QDSKKLSMKA LLAEIKEITE KKREDDSLLA FAAGNRLSIS PDLEFDYPDH DLHEDLYQLI KYSCAEMCST EQLDKVMKIW TTFVEQIFGV
0701: PSRPQGAEDQ EDVVKSMNQN VKSGSSSAGE SEGSPHNYAS VADSRRSKSS RKANEHSQLG QTSNSERDGA AGRTSDALCE TAQHEKMLKN VVTSDEKPES
0801: KQAVSIERAH DSTALAVDGL LDQSNGGSSI VHMTGHCNNN LKPVTCGTEL ELKMNDGNGP KLEVGNKKLL TNGIAVEITS DQEMAGTSKV EREEGELSPN
0901: GDFEEDNFAV YAKTDFETFS KANDSTGNNI SGDRSREGEP SCLETRAEND AEGDENAARS SEDSRNEYEN GDVSGTESGG GEDPEDDLDN NNKGESEGEA
1001: ECMADAHDAE ENGSALPVSA RFLLHVKPLV KYVPSAIALH DKDKDSLKNS QVFYGNDSFY VLFRLHRILY ERILSAKVNS SSPEGKWRTS NTKNPTDSYA
1101: RFMTALYNLL DGTSDNAKFE DDCRAIIGTQ SYILFTLDKL IHKFIKHLQV VVADEMDNKL LQLYFYEKSR RPETIFDAVY YDNTRVLLPD ENIYRIECRL
1201: STPAKLSIQL MCNGLDKPDV TSVSIDPTFA AYLHNDFLSI QPNAREDRRI YLNRNKRKVC REDEQLYSTD EVKIKNGLEC KIACGSSKVS YVLETEDLLV
1301: RVKKRRKTLC HNQDSWVRQM RLQYYKNNFL
0101: AISFVNKIKT RFQGDDRVYK SFLDILNMYR RDSKSITEVY QEVAILFRDH SDLLVEFTHF LPDTSATASI PSVKTSVRER GVSLADKKDR IITPHPDHDY
0201: GTEHIDQDRE RPIKKENKEH MRGTNKENEH RDARDFEPHS KKEQFLNKKQ KLHIRGDDPA EISNQSKLSG AVPSSSTYDE KGAMKSYSQD LAIVDRVKEK
0301: LNASEYQEFL RCLNLFSKEI ISRPELQSLV GNLIGVYPDL MDSFIEFLVQ CEKNEGLLSG ILTKSKSTYL LQGEGKYPQP SLDNDRDQEH KRDDGLRDRD
0401: HEKERLEKAA ANLKWAKPIS ELDLSNCEQC TPSYRLLPKN YPISIASQKT EIGKLVLNDH WVSVTSGSED YSFSHMRKNQ YEESLFKCED DRFELDMLLE
0501: SVNSTTKHVE ELLTKINSNE LKTNSPIRVE DHLTALNLRC IERLYGDHGL DVMDVLKKNV SLALPVILTR LKQKQEEWAR CRSDFDKVWA EIYAKNYYKS
0601: LDHRSFYFKQ QDSKKLSMKA LLAEIKEITE KKREDDSLLA FAAGNRLSIS PDLEFDYPDH DLHEDLYQLI KYSCAEMCST EQLDKVMKIW TTFVEQIFGV
0701: PSRPQGAEDQ EDVVKSMNQN VKSGSSSAGE SEGSPHNYAS VADSRRSKSS RKANEHSQLG QTSNSERDGA AGRTSDALCE TAQHEKMLKN VVTSDEKPES
0801: KQAVSIERAH DSTALAVDGL LDQSNGGSSI VHMTGHCNNN LKPVTCGTEL ELKMNDGNGP KLEVGNKKLL TNGIAVEITS DQEMAGTSKV EREEGELSPN
0901: GDFEEDNFAV YAKTDFETFS KANDSTGNNI SGDRSREGEP SCLETRAEND AEGDENAARS SEDSRNEYEN GDVSGTESGG GEDPEDDLDN NNKGESEGEA
1001: ECMADAHDAE ENGSALPVSA RFLLHVKPLV KYVPSAIALH DKDKDSLKNS QVFYGNDSFY VLFRLHRILY ERILSAKVNS SSPEGKWRTS NTKNPTDSYA
1101: RFMTALYNLL DGTSDNAKFE DDCRAIIGTQ SYILFTLDKL IHKFIKHLQV VVADEMDNKL LQLYFYEKSR RPETIFDAVY YDNTRVLLPD ENIYRIECRL
1201: STPAKLSIQL MCNGLDKPDV TSVSIDPTFA AYLHNDFLSI QPNAREDRRI YLNRNKRKVC REDEQLYSTD EVKIKNGLEC KIACGSSKVS YVLETEDLLV
1301: RVKKRRKTLC HNQDSWVRQM RLQYYKNNFL
Arabidopsis Description
SNL3SIN3-like 3 [Source:TAIR;Acc:AT1G24190]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.