Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d040123_P007 | Maize | nucleus | 95.21 | 95.61 |
| Zm00001d008429_P019 | Maize | nucleus | 94.8 | 94.66 |
| Os01t0109700-01 | Rice | nucleus | 77.17 | 83.86 |
| TraesCSU01G039900.1 | Wheat | nucleus | 78.28 | 78.94 |
| TraesCS3B01G005900.1 | Wheat | nucleus | 77.58 | 77.96 |
| TraesCS3D01G007600.2 | Wheat | nucleus, plastid | 74.18 | 77.52 |
| HORVU3Hr1G000540.2 | Barley | plastid | 78.28 | 73.2 |
| GSMUA_Achr1P20690_001 | Banana | nucleus | 64.82 | 69.65 |
| GSMUA_Achr9P00800_001 | Banana | nucleus | 65.65 | 67.77 |
| GSMUA_Achr11P... | Banana | nucleus | 62.04 | 64.88 |
| GSMUA_Achr2P09580_001 | Banana | nucleus | 60.37 | 63.88 |
| KXG20992 | Sorghum | nucleus | 54.55 | 62.98 |
| VIT_01s0026g01010.t01 | Wine grape | nucleus | 63.36 | 62.92 |
| KRH69432 | Soybean | nucleus | 58.5 | 58.95 |
| KRH74716 | Soybean | nucleus | 53.3 | 58.4 |
| CDY23529 | Canola | cytosol | 6.25 | 56.96 |
| CDY48380 | Canola | cytosol | 6.18 | 56.33 |
| AT1G24200.1 | Thale cress | cytosol | 7.43 | 54.59 |
| CDY38781 | Canola | nucleus | 47.95 | 53.61 |
| Bra016241.1-P | Field mustard | nucleus | 47.88 | 53.53 |
| CDY11625 | Canola | nucleus | 47.88 | 53.49 |
| CDY23527 | Canola | nucleus | 47.61 | 53.01 |
| CDX68358 | Canola | nucleus | 47.12 | 52.88 |
| AT1G70060.2 | Thale cress | nucleus | 48.65 | 52.87 |
| AT1G24190.3 | Thale cress | nucleus | 48.79 | 52.54 |
| CDY48381 | Canola | cytosol | 5.62 | 52.26 |
| Bra003968.1-P | Field mustard | cytosol | 5.62 | 52.26 |
| CDY23528 | Canola | cytosol | 5.62 | 52.26 |
| AT1G70030.1 | Thale cress | cytosol | 5.76 | 51.88 |
| Bra003967.1-P | Field mustard | nucleus | 47.05 | 51.56 |
| EES00446 | Sorghum | plastid | 2.85 | 31.54 |
| KXG22653 | Sorghum | nucleus | 14.92 | 25.69 |
Protein Annotations
| Gene3D:1.20.1160.11 | MapMan:12.3.2.4.2 | EntrezGene:8079088 | UniProt:C5XEY3 | ncoils:Coil | EnsemblPlants:EES00449 |
| ProteinID:EES00449 | ProteinID:EES00449.1 | GO:GO:0000118 | GO:GO:0000122 | GO:GO:0000785 | GO:GO:0001106 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004407 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005654 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0006464 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016575 | GO:GO:0016787 |
| GO:GO:0019538 | InterPro:HDAC_interact_dom | InterPro:IPR003822 | ProteinID:OQU86506.1 | InterPro:PAH | InterPro:PAH_sf |
| PFAM:PF02671 | PFAM:PF08295 | PFAM:PF16879 | PFscan:PS51477 | PANTHER:PTHR12346 | PANTHER:PTHR12346:SF21 |
| SMART:SM00761 | EnsemblPlantsGene:SORBI_3003G101400 | SUPFAM:SSF47762 | unigene:Sbi.109 | InterPro:Sin3_C | UniParc:UPI0001A848ED |
| RefSeq:XP_002455329.1 | SEG:seg | : | : | : | : |
Description
hypothetical protein
Coordinates
chr3:+:8985541..8995030
Molecular Weight (calculated)
163329.0 Da
IEP (calculated)
5.635
GRAVY (calculated)
-0.875
Length
1441 amino acids
Sequence
(BLAST)
(BLAST)
0001: MKRGARDDAL MGSQLKRPNV ARSDPSAQPQ HNMPVPGSAS GAAPPPQAGA APPAQPQQPS GAALTNQKLT TNDALVYLKA VKDKFQDKRE KYEEFLEVMR
0101: DFKSERIDTN GVIVRVKTLF NGYPELILGF NAFLPKGYAI KLQEEKKPVD FVEAINFVNK IKNRFQHDEQ VYKAFLDILN MYRKDNKSIQ DVYQEVALLF
0201: TEHKDLLEEF QHFLPDTSVA PQAVASRGGL VKREDRGSLV PPANRTLHND KRDRAYLSHA DRDFSVDRPD VEHDRQRRRL DKEKEQRKVE RDRRDYERED
0301: KDGEHDSRDL EIGQRKRKPF PRKMEDNAAA EAHQGGPSEN HGIHSVSASS YDDKDALKSV YTHEFHFCEK VKEKLEHEAY QEFLKCLHIY SQEIITRSEL
0401: KNLVNDILQH YPDLMEGFNE FLEHCENIDG FLAGVFNKRP TARVVKTEDK EKDRDRDRED RDRDREKERE KERERLDKGS TFNSKEGSSH KPPMFSGKEK
0501: YNLSKPISEL DLSNCQRCTP SYRLLPKNYP MPPASNRTDL GASVLNDHWV SVTSGSEDYS FKHMRKNQYE ESLFRCEDDR FELDMLLESV NAATKRVEEL
0601: IEKMQDNSVK PESPIRIDEH LTPLNLRCIE RLYGDHGLDV MDVLRKNASV ALPVILTRLK QKQEEWSRCR SDFNKVWAEI YAKNYHKSLD HRSFYFKQQD
0701: TKNLSTKSLL TEIKEINEKK RKEDDVLLAI AAGNRRPIVP NMSFEYVDSE IHEDLHKIIK YSCGEVCNSS DQLDKVMRIW TTFLEPILGV QRKHGSEDPD
0801: LVKPKSRTTK LGLANAGESN TGAGIVSKQN NGDESEQGLS SRARLANGVA ADTQNGFHDA DRTARRGEEP SNAILNGRVH GAISADETPS LSAQNIASTE
0901: RAAENAAVVR TEQHKANSEL TPGVNASRSS HDAVEAAGEG KTGNETLLSA EGGETGRLGP SLNGTSEGIK GRLNNDGSVP HTSKVEREEG ELSPNGDFEE
1001: DHFVPFEDGT SKGKEGSTSR SFQGRPGEVV PSSAEAAGEN DADADDEGEE SAQRSTEDSE NASEAGEDAS GSESGDGEEC SREDHDEEEE DMDHDDQDAK
1101: AESEGEAEGT TETHDVEGGI SLPLSERFLY SVKPLAKHVP TALHDREEKF SRIFYGNDSF YVLFRLHQIL YERLLSAKTN SFTAEKKWRN SKDTNPPDLY
1201: AKFMSALYNL LDGSSDNTKF EDDCRAIIGT QSYVLFTLDK LIYKVVKQLQ AIATDEMDNK LLQLYLYEKS RSPGRFFDLV YHENARVLLH DESIYRFECC
1301: SSPTRLSIQL MEYGHEKPEV TAVSIDPNFS SYLFSEYLCS TSDKKLSEGV YLGRNKRKYS NNDEPSDSLK AMDSIKVVNG LECKISCKTS KVSYVLDTED
1401: FLFRLRKRRK ILRGGNVPDS LQISKIYAAK VQRFNRFLSK P
0101: DFKSERIDTN GVIVRVKTLF NGYPELILGF NAFLPKGYAI KLQEEKKPVD FVEAINFVNK IKNRFQHDEQ VYKAFLDILN MYRKDNKSIQ DVYQEVALLF
0201: TEHKDLLEEF QHFLPDTSVA PQAVASRGGL VKREDRGSLV PPANRTLHND KRDRAYLSHA DRDFSVDRPD VEHDRQRRRL DKEKEQRKVE RDRRDYERED
0301: KDGEHDSRDL EIGQRKRKPF PRKMEDNAAA EAHQGGPSEN HGIHSVSASS YDDKDALKSV YTHEFHFCEK VKEKLEHEAY QEFLKCLHIY SQEIITRSEL
0401: KNLVNDILQH YPDLMEGFNE FLEHCENIDG FLAGVFNKRP TARVVKTEDK EKDRDRDRED RDRDREKERE KERERLDKGS TFNSKEGSSH KPPMFSGKEK
0501: YNLSKPISEL DLSNCQRCTP SYRLLPKNYP MPPASNRTDL GASVLNDHWV SVTSGSEDYS FKHMRKNQYE ESLFRCEDDR FELDMLLESV NAATKRVEEL
0601: IEKMQDNSVK PESPIRIDEH LTPLNLRCIE RLYGDHGLDV MDVLRKNASV ALPVILTRLK QKQEEWSRCR SDFNKVWAEI YAKNYHKSLD HRSFYFKQQD
0701: TKNLSTKSLL TEIKEINEKK RKEDDVLLAI AAGNRRPIVP NMSFEYVDSE IHEDLHKIIK YSCGEVCNSS DQLDKVMRIW TTFLEPILGV QRKHGSEDPD
0801: LVKPKSRTTK LGLANAGESN TGAGIVSKQN NGDESEQGLS SRARLANGVA ADTQNGFHDA DRTARRGEEP SNAILNGRVH GAISADETPS LSAQNIASTE
0901: RAAENAAVVR TEQHKANSEL TPGVNASRSS HDAVEAAGEG KTGNETLLSA EGGETGRLGP SLNGTSEGIK GRLNNDGSVP HTSKVEREEG ELSPNGDFEE
1001: DHFVPFEDGT SKGKEGSTSR SFQGRPGEVV PSSAEAAGEN DADADDEGEE SAQRSTEDSE NASEAGEDAS GSESGDGEEC SREDHDEEEE DMDHDDQDAK
1101: AESEGEAEGT TETHDVEGGI SLPLSERFLY SVKPLAKHVP TALHDREEKF SRIFYGNDSF YVLFRLHQIL YERLLSAKTN SFTAEKKWRN SKDTNPPDLY
1201: AKFMSALYNL LDGSSDNTKF EDDCRAIIGT QSYVLFTLDK LIYKVVKQLQ AIATDEMDNK LLQLYLYEKS RSPGRFFDLV YHENARVLLH DESIYRFECC
1301: SSPTRLSIQL MEYGHEKPEV TAVSIDPNFS SYLFSEYLCS TSDKKLSEGV YLGRNKRKYS NNDEPSDSLK AMDSIKVVNG LECKISCKTS KVSYVLDTED
1401: FLFRLRKRRK ILRGGNVPDS LQISKIYAAK VQRFNRFLSK P
0001: MVGGGSAQKL TTNDALAYLK AVKDKFQDQR GKYDEFLEVM KNFKSQRVDT AGVITRVKEL FKGHQELILG FNTFLPKGFE ITLQPEDGQP PLKKRVEFEE
0101: AISFVNKIKT RFQGDDRVYK SFLDILNMYR RDSKSITEVY QEVAILFRDH SDLLVEFTHF LPDTSATASI PSVKTSVRER GVSLADKKDR IITPHPDHDY
0201: GTEHIDQDRE RPIKKENKEH MRGTNKENEH RDARDFEPHS KKEQFLNKKQ KLHIRGDDPA EISNQSKLSG AVPSSSTYDE KGAMKSYSQD LAIVDRVKEK
0301: LNASEYQEFL RCLNLFSKEI ISRPELQSLV GNLIGVYPDL MDSFIEFLVQ CEKNEGLLSG ILTKKSLWSE GKYPQPSLDN DRDQEHKRDD GLRDRDHEKE
0401: RLEKAAANLK WAKPISELDL SNCEQCTPSY RLLPKNYPIS IASQKTEIGK LVLNDHWVSV TSGSEDYSFS HMRKNQYEES LFKCEDDRFE LDMLLESVNS
0501: TTKHVEELLT KINSNELKTN SPIRVEDHLT ALNLRCIERL YGDHGLDVMD VLKKNVSLAL PVILTRLKQK QEEWARCRSD FDKVWAEIYA KNYYKSLDHR
0601: SFYFKQQDSK KLSMKALLAE IKEITEKKRE DDSLLAFAAG NRLSISPDLE FDYPDHDLHE DLYQLIKYSC AEMCSTEQLD KVMKIWTTFV EQIFGVPSRP
0701: QGAEDQEDVV KSMNQNVKSG SSSAGESEGS PHNYASVADS RRSKSSRKAN EHSQLGQTSN SERDGAAGRT SDALCETAQH EKMLKNVVTS DEKPESKQAV
0801: SIERAHDSTA LAVDGLLDQS NGGSSIVHMT GHCNNNLKPV TCGTELELKM NDGNGPKLEV GNKKLLTNGI AVEITSDQEM AGTSKVEREE GELSPNGDFE
0901: EDNFAVYAKT DFETFSKAND STGNNISGDR SREGEPSCLE TRAENDAEGD ENAARSSEDS RNEYENGDVS GTESGGGEDP EDDLDNNNKG ESEGEAECMA
1001: DAHDAEENGS ALPVSARFLL HVKPLVKYVP SAIALHDKDK DSLKNSQVFY GNDSFYVLFR LHRILYERIL SAKVNSSSPE GKWRTSNTKN PTDSYARFMT
1101: ALYNLLDGTS DNAKFEDDCR AIIGTQSYIL FTLDKLIHKF IKHLQVVVAD EMDNKLLQLY FYEKSRRPET IFDAVYYDNT RVLLPDENIY RIECRLSTPA
1201: KLSIQLMCNG LDKPDVTSVS IDPTFAAYLH NDFLSIQPNA REDRRIYLNR NKRKVCREDE QLYSTDEVKI KNGLECKIAC GSSKVSYVLE TEDLLVRVKK
1301: RRKTLCHNQD SWRQNKNKSG NSPLLTSPDR AKLHSLSS
0101: AISFVNKIKT RFQGDDRVYK SFLDILNMYR RDSKSITEVY QEVAILFRDH SDLLVEFTHF LPDTSATASI PSVKTSVRER GVSLADKKDR IITPHPDHDY
0201: GTEHIDQDRE RPIKKENKEH MRGTNKENEH RDARDFEPHS KKEQFLNKKQ KLHIRGDDPA EISNQSKLSG AVPSSSTYDE KGAMKSYSQD LAIVDRVKEK
0301: LNASEYQEFL RCLNLFSKEI ISRPELQSLV GNLIGVYPDL MDSFIEFLVQ CEKNEGLLSG ILTKKSLWSE GKYPQPSLDN DRDQEHKRDD GLRDRDHEKE
0401: RLEKAAANLK WAKPISELDL SNCEQCTPSY RLLPKNYPIS IASQKTEIGK LVLNDHWVSV TSGSEDYSFS HMRKNQYEES LFKCEDDRFE LDMLLESVNS
0501: TTKHVEELLT KINSNELKTN SPIRVEDHLT ALNLRCIERL YGDHGLDVMD VLKKNVSLAL PVILTRLKQK QEEWARCRSD FDKVWAEIYA KNYYKSLDHR
0601: SFYFKQQDSK KLSMKALLAE IKEITEKKRE DDSLLAFAAG NRLSISPDLE FDYPDHDLHE DLYQLIKYSC AEMCSTEQLD KVMKIWTTFV EQIFGVPSRP
0701: QGAEDQEDVV KSMNQNVKSG SSSAGESEGS PHNYASVADS RRSKSSRKAN EHSQLGQTSN SERDGAAGRT SDALCETAQH EKMLKNVVTS DEKPESKQAV
0801: SIERAHDSTA LAVDGLLDQS NGGSSIVHMT GHCNNNLKPV TCGTELELKM NDGNGPKLEV GNKKLLTNGI AVEITSDQEM AGTSKVEREE GELSPNGDFE
0901: EDNFAVYAKT DFETFSKAND STGNNISGDR SREGEPSCLE TRAENDAEGD ENAARSSEDS RNEYENGDVS GTESGGGEDP EDDLDNNNKG ESEGEAECMA
1001: DAHDAEENGS ALPVSARFLL HVKPLVKYVP SAIALHDKDK DSLKNSQVFY GNDSFYVLFR LHRILYERIL SAKVNSSSPE GKWRTSNTKN PTDSYARFMT
1101: ALYNLLDGTS DNAKFEDDCR AIIGTQSYIL FTLDKLIHKF IKHLQVVVAD EMDNKLLQLY FYEKSRRPET IFDAVYYDNT RVLLPDENIY RIECRLSTPA
1201: KLSIQLMCNG LDKPDVTSVS IDPTFAAYLH NDFLSIQPNA REDRRIYLNR NKRKVCREDE QLYSTDEVKI KNGLECKIAC GSSKVSYVLE TEDLLVRVKK
1301: RRKTLCHNQD SWRQNKNKSG NSPLLTSPDR AKLHSLSS
Arabidopsis Description
SNL3SIN3-like 3 [Source:TAIR;Acc:AT1G24190]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.