CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 4
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d008431_P001	Maize	nucleus	69.23	69.23
TraesCS3A01G002800.1	Wheat	cytoskeleton, cytosol, nucleus	30.0	20.53
TraesCS3D01G007000.1	Wheat	cytosol	27.69	19.15
KXG20992	Sorghum	nucleus	30.77	3.21
EES00449	Sorghum	nucleus	31.54	2.85
KXG22653	Sorghum	nucleus	4.62	0.72

Protein Annotations

Gene3D:1.20.1160.11	MapMan:35.2	UniProt:C5XEX6	EnsemblPlants:EES00446	ProteinID:EES00446	ProteinID:EES00446.2
GO:GO:0003674	GO:GO:0003824	GO:GO:0004675	GO:GO:0004871	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005886	GO:GO:0006139	GO:GO:0006355	GO:GO:0006464
GO:GO:0006468	GO:GO:0007154	GO:GO:0007165	GO:GO:0007166	GO:GO:0007178	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0016301	GO:GO:0016740
GO:GO:0019538	GO:GO:0038023	InterPro:IPR003822	InterPro:PAH	InterPro:PAH_sf	PFAM:PF02671
PFscan:PS51477	PANTHER:PTHR12346	EnsemblPlantsGene:SORBI_3003G101200	SUPFAM:SSF47762	UniParc:UPI00081AD6C5	SEG:seg

Description

hypothetical protein

Coordinates

chr3:+:8961818..8962890

Molecular Weight (calculated)

14191.7 Da

IEP (calculated)

5.139

GRAVY (calculated)

-0.253

Length

130 amino acids

Sequence
(BLAST)

001: MTYSSFSNDR PVGGAASGAK NMSAAGAAAR SWSPSVEDAM SFVQMVKEAF KEQHPDKYHL FVRVMDDFKN HRIGIAEVAA TAKALFQDNP DLALGFNAFL
101: PKGHRILVGL DELAACFIRD MNLDDDDDGH

Best Arabidopsis Sequence Match ( AT1G70030.3 )
(BLAST)

001: MKHLPVVSFK TMVANKKLTT TDALDFLHLV KTKYQDNREI YDSFLTIMKD FRGQRAKTCD VISKVKELFK GQPELLLGFN TFLPTGFEIT LSDDELTSNS
101: KFAHFDEAYE FVNKVKVVGQ NHTSN

Arabidopsis Description

Paired amphipathic helix (PAH2) superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q84R24]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.