Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra003967.1-P | Field mustard | nucleus | 99.53 | 97.19 |
| CDY23527 | Canola | nucleus | 95.17 | 94.44 |
| CDY11625 | Canola | nucleus | 85.59 | 85.19 |
| CDY38781 | Canola | nucleus | 85.05 | 84.72 |
| AT1G70060.2 | Thale cress | nucleus | 81.39 | 78.81 |
| CDY23529 | Canola | cytosol | 8.33 | 67.72 |
| CDY48380 | Canola | cytosol | 8.18 | 66.46 |
| CDY48381 | Canola | cytosol | 7.32 | 60.65 |
| CDY23528 | Canola | cytosol | 7.32 | 60.65 |
| CDY64434 | Canola | nucleus | 2.8 | 58.06 |
| CDY31594 | Canola | nucleus | 16.82 | 54.41 |
| VIT_01s0026g01010.t01 | Wine grape | nucleus | 61.37 | 54.31 |
| CDY55066 | Canola | cytosol | 16.74 | 54.02 |
| KRH69432 | Soybean | nucleus | 59.42 | 53.36 |
| KRH74716 | Soybean | nucleus | 54.44 | 53.16 |
| CDY14679 | Canola | cytosol, mitochondrion, nucleus | 3.66 | 52.22 |
| GSMUA_Achr1P20690_001 | Banana | nucleus | 54.21 | 51.9 |
| CDY30912 | Canola | nucleus | 41.98 | 51.33 |
| CDY16234 | Canola | cytosol, mitochondrion, nucleus | 3.58 | 51.11 |
| CDY37976 | Canola | nucleus | 38.47 | 50.0 |
| TraesCS1B01G002000.1 | Wheat | nucleus | 50.31 | 49.81 |
| CDX93425 | Canola | nucleus | 39.33 | 49.7 |
| CDY24499 | Canola | nucleus | 42.76 | 49.5 |
| Os01t0109700-01 | Rice | nucleus | 50.7 | 49.09 |
| GSMUA_Achr9P00800_001 | Banana | nucleus | 53.35 | 49.07 |
| TraesCS1A01G002700.1 | Wheat | nucleus | 50.86 | 49.02 |
| HORVU1Hr1G000290.3 | Barley | nucleus | 50.78 | 48.99 |
| CDY40291 | Canola | cytoskeleton, cytosol, nucleus | 3.27 | 48.84 |
| CDY28457 | Canola | cytoskeleton, cytosol, nucleus | 3.19 | 48.81 |
| TraesCS1D01G004900.4 | Wheat | nucleus | 50.93 | 48.62 |
| GSMUA_Achr2P09580_001 | Banana | nucleus | 51.01 | 48.09 |
| GSMUA_Achr11P... | Banana | nucleus | 51.48 | 47.97 |
| CDY33612 | Canola | nucleus | 42.76 | 47.61 |
| CDY45153 | Canola | nucleus | 35.59 | 47.21 |
| EES00449 | Sorghum | nucleus | 52.88 | 47.12 |
| Zm00001d008429_P019 | Maize | nucleus | 52.88 | 47.05 |
| Zm00001d040123_P007 | Maize | nucleus | 52.57 | 47.04 |
| TraesCSU01G039900.1 | Wheat | nucleus | 51.64 | 46.4 |
| KXG20992 | Sorghum | nucleus | 45.09 | 46.39 |
| CDX78604 | Canola | nucleus | 48.6 | 46.22 |
| CDY06480 | Canola | cytosol | 8.49 | 46.19 |
| TraesCS3B01G005900.1 | Wheat | nucleus | 51.4 | 46.03 |
| CDX70587 | Canola | nucleus | 48.44 | 45.9 |
| TraesCS3D01G007600.2 | Wheat | nucleus, plastid | 49.22 | 45.83 |
| CDY67989 | Canola | nucleus | 5.53 | 45.51 |
| CDY31595 | Canola | nucleus | 24.45 | 45.38 |
| CDY55065 | Canola | nucleus | 24.53 | 45.06 |
| Zm00001d035776_P004 | Maize | nucleus | 43.93 | 44.73 |
| CDX91007 | Canola | nucleus | 46.03 | 44.67 |
| CDX85568 | Canola | nucleus | 46.34 | 44.54 |
| CDY08302 | Canola | cytosol | 8.88 | 44.53 |
| CDY71516 | Canola | cytosol, mitochondrion, nucleus | 8.8 | 43.46 |
| Os05t0100500-01 | Rice | plastid | 12.38 | 43.21 |
| CDY08301 | Canola | cytosol | 9.35 | 43.17 |
| CDY28683 | Canola | mitochondrion, nucleus | 45.09 | 43.02 |
| CDY70453 | Canola | cytosol | 11.21 | 42.99 |
| HORVU3Hr1G000540.2 | Barley | plastid | 51.4 | 42.83 |
| CDY42981 | Canola | mitochondrion | 5.14 | 41.25 |
| CDY66875 | Canola | mitochondrion | 5.14 | 41.25 |
| CDY03764 | Canola | cytosol | 4.98 | 39.51 |
| CDY28682 | Canola | nucleus | 37.69 | 39.06 |
| CDY42984 | Canola | cytosol, mitochondrion, nucleus | 4.83 | 38.75 |
| CDY42979 | Canola | cytosol, mitochondrion, nucleus | 4.36 | 38.62 |
| CDY42983 | Canola | nucleus | 3.89 | 30.86 |
| Zm00001d041450_P002 | Maize | nucleus | 18.22 | 29.77 |
| CDY64433 | Canola | cytosol | 5.45 | 26.42 |
| CDY03763 | Canola | cytosol | 5.45 | 24.56 |
| Zm00001d041453_P001 | Maize | nucleus | 21.57 | 23.98 |
| CDY42986 | Canola | cytosol | 3.66 | 22.49 |
| CDY16235 | Canola | mitochondrion | 4.44 | 16.96 |
| CDY14678 | Canola | cytosol | 4.28 | 15.9 |
Protein Annotations
| Gene3D:1.20.1160.11 | MapMan:12.3.2.4.2 | GO:A0A078BZQ7 | EnsemblPlants:CDX68358 | ProteinID:CDX68358 | ProteinID:CDX68358.1 |
| ncoils:Coil | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00099666001 | InterPro:HDAC_interact_dom | InterPro:IPR003822 | InterPro:PAH | InterPro:PAH_sf |
| PFAM:PF02671 | PFAM:PF08295 | PFAM:PF16879 | PFscan:PS51477 | PANTHER:PTHR12346 | PANTHER:PTHR12346:SF21 |
| SMART:SM00761 | SUPFAM:SSF47762 | InterPro:Sin3_C | UniParc:UPI0004EEBF03 | SEG:seg | : |
Description
BnaA07g23980D
Coordinates
chrLK031787:-:5190124..5196356
Molecular Weight (calculated)
145864.0 Da
IEP (calculated)
5.026
GRAVY (calculated)
-0.801
Length
1284 amino acids
Sequence
(BLAST)
(BLAST)
0001: MVGGGGSAQK LTTNDALAYL KAVKDKFADK REKYDEFLEV MKDFKAQRVD TSGVILRVKE LFKGNRELIL GFNTFLPKGF EITLLPEEDD QPLPKKPVEF
0101: EEAISFVNKI KTRFQGDDRV YKSFLDILNM YRKENKSITE VYQEVAILFR DHHDLLVEFT HFLPDTSGTT STNDLVKMSV RDRGGFKSLP TIRDSDKKDR
0201: INDLKTEHME LDQERSLLKE SKEDVRRIDK KNDYSDDQKG QFLHSKKKLT LRDEDSTETS NQGREGDKFC GAIATSSTKD DKGHVQELAF VDRVKAKLSS
0301: SEYQEFLRCL NLFSKEIISQ PELQSLVGNL IGGYPDLMEA FRVFLVQCEK NDGLLSSVVT KKSLWSDGKC PQPTKSQDKD TEREREKTER LRERDREKER
0401: LEKAAASQKW AKPISELDLS NCEQCTPSYR LLPKNYPIPI ASQKMEIGSQ VLNDHWVSVT SGSEDYSFKH MRKNQYEESL FRCEDDRFEL DMLLESVNSA
0501: TNRVEELLAK INNNELKTDT PICIEDHLTA LNIRCIERLY GDHGLDVIDL LKKNAYLALP VILTRLKQKQ EEWGRCRSEF NKVWADIYTK NYHRSLDHRS
0601: FYFKQQDSKN LSAKALLAEI NEISEKKRGE DDALLALAAG NRRTICSSMS FDYPDPDLHE DLYQLIKYSC GEMCSTEQLD KVMKVWTEFL EPMFGVPSRP
0701: QVAEDQEDAI KTTTNQNLKT GDASEDSPQN GATVASTVRS NGPRKADRDF TASKSSDDNI QNDKMRKNLS TPEERPETKE AVTIERVHSS NSPPVDGLIP
0801: QRNGKTSVLS IVAGLSNSTP KPGGLTSGTE MESKPNHVNG TLAETSNNQR SNEVSAGETK VEREEGELSP TGDFEEDNFA ENDLDALSNG KDDAGNNLNQ
0901: RSSGENDEGD ESAPRSSDGS GNTSHNGDVS GTESGDGEQD CYPEDDNKVE SEGEAEAEEG MSDAEGDRPV LPVYVRNLLH AKPLSKYVPP AILDKDNKDD
1001: SQKKNSIVFY GNDSYYVLFR LHQILYERIL SAKINSSCPE RMWKTSNSTN PADSYARFMN ALYNLLDGTS DNSKFEDDCR AIIGTQSYVL FTLDKLIYKL
1101: IKHLQVVAAD EMDSKLQQLY SYEKSRKPEK YFDDVYYENA RVLLPDEDVY RIECELSAQT TKLSIQLLDY GHDKPDVTSI SMDPTFTAYL QNKFLSSQAK
1201: VKENPRIYLN RNKRKNGDDD ELCTTDGVKI INGLECKITC SSSKVSYVFD TEDILHRVKK RKVLSGSIIR ERRIQRYQKL LTSQ
0101: EEAISFVNKI KTRFQGDDRV YKSFLDILNM YRKENKSITE VYQEVAILFR DHHDLLVEFT HFLPDTSGTT STNDLVKMSV RDRGGFKSLP TIRDSDKKDR
0201: INDLKTEHME LDQERSLLKE SKEDVRRIDK KNDYSDDQKG QFLHSKKKLT LRDEDSTETS NQGREGDKFC GAIATSSTKD DKGHVQELAF VDRVKAKLSS
0301: SEYQEFLRCL NLFSKEIISQ PELQSLVGNL IGGYPDLMEA FRVFLVQCEK NDGLLSSVVT KKSLWSDGKC PQPTKSQDKD TEREREKTER LRERDREKER
0401: LEKAAASQKW AKPISELDLS NCEQCTPSYR LLPKNYPIPI ASQKMEIGSQ VLNDHWVSVT SGSEDYSFKH MRKNQYEESL FRCEDDRFEL DMLLESVNSA
0501: TNRVEELLAK INNNELKTDT PICIEDHLTA LNIRCIERLY GDHGLDVIDL LKKNAYLALP VILTRLKQKQ EEWGRCRSEF NKVWADIYTK NYHRSLDHRS
0601: FYFKQQDSKN LSAKALLAEI NEISEKKRGE DDALLALAAG NRRTICSSMS FDYPDPDLHE DLYQLIKYSC GEMCSTEQLD KVMKVWTEFL EPMFGVPSRP
0701: QVAEDQEDAI KTTTNQNLKT GDASEDSPQN GATVASTVRS NGPRKADRDF TASKSSDDNI QNDKMRKNLS TPEERPETKE AVTIERVHSS NSPPVDGLIP
0801: QRNGKTSVLS IVAGLSNSTP KPGGLTSGTE MESKPNHVNG TLAETSNNQR SNEVSAGETK VEREEGELSP TGDFEEDNFA ENDLDALSNG KDDAGNNLNQ
0901: RSSGENDEGD ESAPRSSDGS GNTSHNGDVS GTESGDGEQD CYPEDDNKVE SEGEAEAEEG MSDAEGDRPV LPVYVRNLLH AKPLSKYVPP AILDKDNKDD
1001: SQKKNSIVFY GNDSYYVLFR LHQILYERIL SAKINSSCPE RMWKTSNSTN PADSYARFMN ALYNLLDGTS DNSKFEDDCR AIIGTQSYVL FTLDKLIYKL
1101: IKHLQVVAAD EMDSKLQQLY SYEKSRKPEK YFDDVYYENA RVLLPDEDVY RIECELSAQT TKLSIQLLDY GHDKPDVTSI SMDPTFTAYL QNKFLSSQAK
1201: VKENPRIYLN RNKRKNGDDD ELCTTDGVKI INGLECKITC SSSKVSYVFD TEDILHRVKK RKVLSGSIIR ERRIQRYQKL LTSQ
0001: MVGGSSAQKL TTNDALAYLK AVKDKFQDKR DKYDEFLEVM KDFKAQRVDT TGVILRVKEL FKGNRELILG FNTFLPKGFE ITLRPEDDQP AAPKKPVEFE
0101: EAISFVNKIK TRFQGDDRVY KSFLDILNMY RKENKSITEV YHEVAILFRD HHDLLGEFTH FLPDTSATAS TNDSVKVPVR DRGIKSLPTM RQIDLDKKDR
0201: IITSHPNRAL KTENMDVDHE RSLLKDSKEE VRRIDKKNDF MDDRDRKDYR GLDHDSHKEH FFNSKKKLIR KDDDSAEMSD QAREGDKFSG AIPSSSTYDE
0301: KGHSQELAFV DRVKAKLDTA DNQEFLRCLN LYSKEIISQP ELQSLVSDLI GVYPDLMDAF KVFLAQCDKN DGLLSGIVSK KSLWSEGKCP QPTKSLDKDT
0401: DREREKIERY RERDREKERL EKVAASQKWA KPISELDLSN CEQCTPSYRR LPKNYPIPIA SQKMEIGSQV LNDHWVSVTS GSEDYSFKHM RKNQYEESLF
0501: KCEDDRFELD MLLESVISAT NRVEELLAKI NSNELKTDTP ICIEDHLTAL NLRCIERLYS DHGLDVLDLL KKNAYLALPV ILTRLKQKQE EWARCRTEFN
0601: KVWADIYTKN YHRSLDHRSF YFKQQDSKNL STKALLAEIK EISEKKRGED DALLALAAGN RRTISSNMSF DYPDPDLHED LYQLIKYSCG EMCSTEQLDK
0701: VMKVWTEFLE PIFGVPSRPQ GAEDREDAVK STNHDREDQE DAVSPQNGAS IANSMRSNGP RKVNESNQVR QASELDKDVT SSKTSDALLS CDNTQNDKMP
0801: KNLTTPDERA ETKQAVSIER AHNSNALPLD GLLPQRNGKI SSLSVAGLSN SNPKPALTSG TEELKPNYVN GPRVEIGDNP VIPNGTVAEW FAGEAKVERE
0901: EGELSPTGDF EEDNYAVHGE NDMEALSKSK ENDATADDAS APRSSDGSGN TSHNGDVSGT DSGDGEDCYR EDDIDHNKVE SEGEAEEGMS DGHDDTEGDM
1001: PVLSISVKNL LHVKPLAKYV PPALYDKDND DSRKNSQVFY GNDSFYVLFR LHQILYDRIL SAKINSSSPD RKWKTSNPTN PADSYARIMD ALYNLLDGTS
1101: DNSKFEDDCR AIIGTQSYVL FTLDKLIYKL IKHLQAVAAD EMDNKLQQLY AYEKSRKPEK FLDAVYYENA LVLLPDEDIY RIECEQSTPS KLSIQLLDYG
1201: HDKPDVTSIS MDPTFAAYLH NVFLSYQPNA KENPRIYLKR NKRKNGGDDE LCTTDEVKII NGLECKITCS SSKVSYVLDT EDVLHRAKRR KLLNQSGLPL
1301: AHDSVCSGSL IRQRRTQRYQ KLLTGQ
0101: EAISFVNKIK TRFQGDDRVY KSFLDILNMY RKENKSITEV YHEVAILFRD HHDLLGEFTH FLPDTSATAS TNDSVKVPVR DRGIKSLPTM RQIDLDKKDR
0201: IITSHPNRAL KTENMDVDHE RSLLKDSKEE VRRIDKKNDF MDDRDRKDYR GLDHDSHKEH FFNSKKKLIR KDDDSAEMSD QAREGDKFSG AIPSSSTYDE
0301: KGHSQELAFV DRVKAKLDTA DNQEFLRCLN LYSKEIISQP ELQSLVSDLI GVYPDLMDAF KVFLAQCDKN DGLLSGIVSK KSLWSEGKCP QPTKSLDKDT
0401: DREREKIERY RERDREKERL EKVAASQKWA KPISELDLSN CEQCTPSYRR LPKNYPIPIA SQKMEIGSQV LNDHWVSVTS GSEDYSFKHM RKNQYEESLF
0501: KCEDDRFELD MLLESVISAT NRVEELLAKI NSNELKTDTP ICIEDHLTAL NLRCIERLYS DHGLDVLDLL KKNAYLALPV ILTRLKQKQE EWARCRTEFN
0601: KVWADIYTKN YHRSLDHRSF YFKQQDSKNL STKALLAEIK EISEKKRGED DALLALAAGN RRTISSNMSF DYPDPDLHED LYQLIKYSCG EMCSTEQLDK
0701: VMKVWTEFLE PIFGVPSRPQ GAEDREDAVK STNHDREDQE DAVSPQNGAS IANSMRSNGP RKVNESNQVR QASELDKDVT SSKTSDALLS CDNTQNDKMP
0801: KNLTTPDERA ETKQAVSIER AHNSNALPLD GLLPQRNGKI SSLSVAGLSN SNPKPALTSG TEELKPNYVN GPRVEIGDNP VIPNGTVAEW FAGEAKVERE
0901: EGELSPTGDF EEDNYAVHGE NDMEALSKSK ENDATADDAS APRSSDGSGN TSHNGDVSGT DSGDGEDCYR EDDIDHNKVE SEGEAEEGMS DGHDDTEGDM
1001: PVLSISVKNL LHVKPLAKYV PPALYDKDND DSRKNSQVFY GNDSFYVLFR LHQILYDRIL SAKINSSSPD RKWKTSNPTN PADSYARIMD ALYNLLDGTS
1101: DNSKFEDDCR AIIGTQSYVL FTLDKLIYKL IKHLQAVAAD EMDNKLQQLY AYEKSRKPEK FLDAVYYENA LVLLPDEDIY RIECEQSTPS KLSIQLLDYG
1201: HDKPDVTSIS MDPTFAAYLH NVFLSYQPNA KENPRIYLKR NKRKNGGDDE LCTTDEVKII NGLECKITCS SSKVSYVLDT EDVLHRAKRR KLLNQSGLPL
1301: AHDSVCSGSL IRQRRTQRYQ KLLTGQ
Arabidopsis Description
SNL4Paired amphipathic helix protein Sin3-like 4 [Source:UniProtKB/Swiss-Prot;Acc:O04539]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.