Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY42979 | Canola | cytosol, mitochondrion, nucleus | 70.99 | 79.31 |
| CDY66875 | Canola | mitochondrion | 72.84 | 73.75 |
| CDY42981 | Canola | mitochondrion | 72.22 | 73.12 |
| CDY42984 | Canola | cytosol, mitochondrion, nucleus | 72.22 | 73.12 |
| CDY03764 | Canola | cytosol | 70.37 | 70.37 |
| Bra007893.1-P | Field mustard | cytosol | 32.72 | 66.25 |
| CDY67989 | Canola | nucleus | 37.65 | 39.1 |
| CDY03763 | Canola | cytosol | 66.67 | 37.89 |
| CDY42986 | Canola | cytosol | 48.77 | 37.8 |
| AT5G15040.2 | Thale cress | cytoskeleton, cytosol, nucleus | 19.14 | 35.63 |
| CDY28457 | Canola | cytoskeleton, cytosol, nucleus | 14.81 | 28.57 |
| CDY23529 | Canola | cytosol | 27.78 | 28.48 |
| CDY48380 | Canola | cytosol | 27.16 | 27.85 |
| CDY40291 | Canola | cytoskeleton, cytosol, nucleus | 14.2 | 26.74 |
| CDY14679 | Canola | cytosol, mitochondrion, nucleus | 14.81 | 26.67 |
| CDY16234 | Canola | cytosol, mitochondrion, nucleus | 14.81 | 26.67 |
| CDY48381 | Canola | cytosol | 25.31 | 26.45 |
| CDY23528 | Canola | cytosol | 25.31 | 26.45 |
| AT5G15030.1 | Thale cress | endoplasmic reticulum | 19.14 | 22.3 |
| CDY06480 | Canola | cytosol | 27.78 | 19.07 |
| VIT_17s0000g07540.t01 | Wine grape | nucleus | 20.99 | 18.28 |
| CDY08302 | Canola | cytosol | 28.4 | 17.97 |
| CDY08301 | Canola | cytosol | 28.4 | 16.55 |
| CDY31594 | Canola | nucleus | 31.48 | 12.85 |
| CDY55066 | Canola | cytosol | 30.86 | 12.56 |
| CDY64433 | Canola | cytosol | 17.9 | 10.94 |
| CDY16235 | Canola | mitochondrion | 21.6 | 10.42 |
| CDY14678 | Canola | cytosol | 20.99 | 9.83 |
| CDY45153 | Canola | nucleus | 33.95 | 5.68 |
| CDY30912 | Canola | nucleus | 33.95 | 5.24 |
| CDY37976 | Canola | nucleus | 30.86 | 5.06 |
| CDY24499 | Canola | nucleus | 33.95 | 4.96 |
| CDX93425 | Canola | nucleus | 30.25 | 4.82 |
| CDY33612 | Canola | nucleus | 33.95 | 4.77 |
| CDY28683 | Canola | mitochondrion, nucleus | 32.72 | 3.94 |
| CDX91007 | Canola | nucleus | 32.1 | 3.93 |
| CDX68358 | Canola | nucleus | 30.86 | 3.89 |
| CDX85568 | Canola | nucleus | 32.1 | 3.89 |
| CDY11625 | Canola | nucleus | 30.86 | 3.88 |
| CDX78604 | Canola | nucleus | 32.1 | 3.85 |
| CDX70587 | Canola | nucleus | 32.1 | 3.84 |
| CDY38781 | Canola | nucleus | 30.25 | 3.8 |
| CDY23527 | Canola | nucleus | 30.25 | 3.79 |
| CDY71516 | Canola | cytosol, mitochondrion, nucleus | 3.09 | 1.92 |
| CDY70453 | Canola | cytosol | 1.85 | 0.9 |
| CDY31595 | Canola | nucleus | 1.85 | 0.43 |
| CDY55065 | Canola | nucleus | 1.85 | 0.43 |
| CDY28682 | Canola | nucleus | 2.47 | 0.32 |
| CDY64434 | Canola | nucleus | 0.0 | 0.0 |
Protein Annotations
| Gene3D:1.20.1160.11 | MapMan:35.1 | GO:A0A078I1M8 | UniProt:A0A078I1M8 | EnsemblPlants:CDY42983 | ProteinID:CDY42983 |
| ProteinID:CDY42983.1 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00075767001 |
| InterPro:IPR003822 | InterPro:PAH | InterPro:PAH_sf | PFAM:PF02671 | PFscan:PS51477 | PANTHER:PTHR12346 |
| PANTHER:PTHR12346:SF8 | SUPFAM:SSF47762 | UniParc:UPI0004EEA58D | : | : | : |
Description
BnaC02g19570DBnaC02g19570D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I1M8]
Coordinates
chrLK032541:+:18329..24144
Molecular Weight (calculated)
19263.7 Da
IEP (calculated)
9.980
GRAVY (calculated)
-0.294
Length
162 amino acids
Sequence
(BLAST)
(BLAST)
001: MIIKRQSTRD VREYLQIVLN RFPDNCEIYD KITKLLKDLR LARVRSTYND VISKVSQLFK EHKVLLLGFN KFLPPGYKIT LPKDQTQRRK PEFRDAAEFI
101: NKVKERLQDE HAYKVLLRSI MRCCMSSETT RICVWILQLF SLLAIDDNTI EKIEIANSNW II
101: NKVKERLQDE HAYKVLLRSI MRCCMSSETT RICVWILQLF SLLAIDDNTI EKIEIANSNW II
001: MVANKKLTTT DALDFLHLVK TKYQDNREIY DSFLTIMKDF RGQRAKTCDV ISKVKELFKG QPELLLGFNT FLPTGFEITL SDDELTSNSK FAHFDEAYEF
101: VNKVKTRFQN NDVFNSFLEV LKTHKKENKS VAELYQEVAI LFQGHRDLLE EFHLFLPHYG
101: VNKVKTRFQN NDVFNSFLEV LKTHKKENKS VAELYQEVAI LFQGHRDLLE EFHLFLPHYG
Arabidopsis Description
Paired amphipathic helix (PAH2) superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q84R24]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.