Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY28683 | Canola | mitochondrion, nucleus | 91.2 | 83.95 |
| CDY64434 | Canola | nucleus | 3.55 | 70.97 |
| CDX78604 | Canola | nucleus | 63.92 | 58.67 |
| CDX70587 | Canola | nucleus | 63.92 | 58.45 |
| CDX85568 | Canola | nucleus | 61.66 | 57.19 |
| CDX91007 | Canola | nucleus | 60.86 | 56.99 |
| CDY70453 | Canola | cytosol | 14.45 | 53.43 |
| CDY71516 | Canola | cytosol, mitochondrion, nucleus | 10.41 | 49.62 |
| CDY31595 | Canola | nucleus | 23.08 | 41.33 |
| CDY55065 | Canola | nucleus | 23.0 | 40.77 |
| CDX68358 | Canola | nucleus | 39.06 | 37.69 |
| CDY30912 | Canola | nucleus | 31.88 | 37.62 |
| CDY23527 | Canola | nucleus | 39.23 | 37.56 |
| CDY11625 | Canola | nucleus | 38.98 | 37.44 |
| CDY38781 | Canola | nucleus | 38.82 | 37.32 |
| CDY37976 | Canola | nucleus | 29.46 | 36.94 |
| CDY24499 | Canola | nucleus | 32.53 | 36.34 |
| CDX93425 | Canola | nucleus | 29.38 | 35.83 |
| CDY33612 | Canola | nucleus | 32.28 | 34.69 |
| CDY45153 | Canola | nucleus | 25.5 | 32.64 |
| Zm00001d009729_P001 | Maize | nucleus | 5.08 | 25.71 |
| CDY31594 | Canola | nucleus | 8.15 | 25.44 |
| CDY55066 | Canola | cytosol | 7.99 | 24.87 |
| CDY08301 | Canola | cytosol | 2.99 | 13.31 |
| CDY08302 | Canola | cytosol | 2.66 | 12.89 |
| CDY64433 | Canola | cytosol | 2.42 | 11.32 |
| CDY06480 | Canola | cytosol | 2.02 | 10.59 |
| CDY03763 | Canola | cytosol | 1.86 | 8.07 |
| CDY42986 | Canola | cytosol | 0.89 | 5.26 |
| CDY23529 | Canola | cytosol | 0.4 | 3.16 |
| CDY48380 | Canola | cytosol | 0.4 | 3.16 |
| CDY42983 | Canola | nucleus | 0.32 | 2.47 |
| CDY40291 | Canola | cytoskeleton, cytosol, nucleus | 0.16 | 2.33 |
| CDY14679 | Canola | cytosol, mitochondrion, nucleus | 0.16 | 2.22 |
| CDY16234 | Canola | cytosol, mitochondrion, nucleus | 0.16 | 2.22 |
| CDY48381 | Canola | cytosol | 0.24 | 1.94 |
| CDY23528 | Canola | cytosol | 0.24 | 1.94 |
| CDY67989 | Canola | nucleus | 0.16 | 1.28 |
| CDY28457 | Canola | cytoskeleton, cytosol, nucleus | 0.08 | 1.19 |
| CDY42979 | Canola | cytosol, mitochondrion, nucleus | 0.08 | 0.69 |
| CDY42984 | Canola | cytosol, mitochondrion, nucleus | 0.08 | 0.62 |
| CDY66875 | Canola | mitochondrion | 0.08 | 0.62 |
| CDY42981 | Canola | mitochondrion | 0.08 | 0.62 |
| CDY03764 | Canola | cytosol | 0.08 | 0.62 |
| CDY16235 | Canola | mitochondrion | 0.16 | 0.6 |
| CDY14678 | Canola | cytosol | 0.16 | 0.58 |
Protein Annotations
| Gene3D:1.20.1160.11 | MapMan:12.3.2.4.2 | GO:A0A078GUA0 | UniProt:A0A078GUA0 | EnsemblPlants:CDY28682 | ProteinID:CDY28682 |
| ProteinID:CDY28682.1 | ncoils:Coil | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| EnsemblPlantsGene:GSBRNA2T00041309001 | InterPro:HDAC_interact_dom | InterPro:IPR003822 | InterPro:PAH | InterPro:PAH_sf | PFAM:PF02671 |
| PFAM:PF08295 | PFAM:PF16879 | PFscan:PS51477 | PANTHER:PTHR12346 | PANTHER:PTHR12346:SF21 | SMART:SM00761 |
| SUPFAM:SSF47762 | InterPro:Sin3_C | UniParc:UPI0004EF22A9 | SEG:seg | : | : |
Description
BnaCnng05680DBnaCnng05680D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GUA0]
Coordinates
chrLK032225:-:199180..206269
Molecular Weight (calculated)
141320.0 Da
IEP (calculated)
5.612
GRAVY (calculated)
-0.850
Length
1239 amino acids
Sequence
(BLAST)
(BLAST)
0001: MKKKTHSAAQ HSRSQAQRYN DPRSGPPLIR QMQVEKEHRR ERAVASRSDY NADHNDLCDD KTMVKMQREQ RKRADKENRE RRGRVLDDRE ADQDNLHHFP
0101: EIRKSSRRAE CPEAYSGSAS HSEKDNLKSM YNQAFVFCEK VKERLCSHDD YQTFLKCLNL FSNGIIQTKE LQNMVSDLLG KYPDLMDEFS QFFERCESID
0201: GFQHLAGAMS KKSFSSEEQA SRSMEVEEKE REHKPDLEVV NETEQYKEEY VGKSIQELDL SNCECCTPSY RLLPSDYPVR TASQRSELGA EVLNDRWVSV
0301: TSGSEDYSFK HMRRNPYEEI LFRCEDDRFE LDMLLESVSS AARTAENLLN IITEKKIAFS GSFRIEDHFT ALNLRCIERL YGEHGLDVID ILHKNPATAL
0401: PVILTRLKQK QDEWKKCRDD FDKIWAKVYA KNHYKSLDHR SFYFKQQDSK NSSAKSLNLR CIERLYGEHG LDVIDILHKN PATALPVILT RLKQKQDEWK
0501: KCRDDFDKIW AKVYAKNHYK SLDHRSFYFK QQDSKNSSAK SLVAEIKELK EKSQNEDDIL LSISAGYRQP INPNLDYEYF SRDMHEDLYK LVHFSCEELC
0601: STKEQLSKVL RLWENFLEPV LGVPPRAKGT DPVEDVPKTL DVNHSTSTNE EANGSCGADT ATLASRKLIS VANGDQNASS GASNLGEIGL LNKDSTGKDD
0701: LQDADTANGD GVTSSAVKLQ KKHKTGNRAD QRSVMPTPMD INERASTSNL STPSGENNHG VLEKEDLAGS HEIQAKPSNT LSDIHHIKTS PSTQAGDGGK
0801: SIALASGIRS DSSTDNMNSD EPEGALTIEK EEGELSPNGD FDDNVGFHED LGVKSTSKPE NLADAEVENE DEDSENASEG GEECSHDENR EEESGEHDEV
0901: DGKAESEGEA EEVDSHSLAG DTELLRQSER VLLSARPLSK HVAAVLRDGR TKDIRVFYGN DDFYVLFRLH QILYERILSA KRNCSGDELK SKNSKDTDSL
1001: DPYARFMKGL YGLLDGSVEN TKFEDECRAI FGNQSYVLFT LNKVMYKLVK QLQAVVADEM DNKLIQLYEY EKSRKPGRVI DSVYYENARV LLHDENVYRL
1101: ECSSSPSRLS IQLMDNIVEK PEPYAVSMDP MFASYLQTEF LSTSREKKEE GHNIVLRRNR RPYSGLDDLA ALCKAMEGVE VVNGLECKMS CSSYKVSYVL
1201: DTEDFFHRKK KKKKKIEHIS QQRSKDRVER FHRFLSASR
0101: EIRKSSRRAE CPEAYSGSAS HSEKDNLKSM YNQAFVFCEK VKERLCSHDD YQTFLKCLNL FSNGIIQTKE LQNMVSDLLG KYPDLMDEFS QFFERCESID
0201: GFQHLAGAMS KKSFSSEEQA SRSMEVEEKE REHKPDLEVV NETEQYKEEY VGKSIQELDL SNCECCTPSY RLLPSDYPVR TASQRSELGA EVLNDRWVSV
0301: TSGSEDYSFK HMRRNPYEEI LFRCEDDRFE LDMLLESVSS AARTAENLLN IITEKKIAFS GSFRIEDHFT ALNLRCIERL YGEHGLDVID ILHKNPATAL
0401: PVILTRLKQK QDEWKKCRDD FDKIWAKVYA KNHYKSLDHR SFYFKQQDSK NSSAKSLNLR CIERLYGEHG LDVIDILHKN PATALPVILT RLKQKQDEWK
0501: KCRDDFDKIW AKVYAKNHYK SLDHRSFYFK QQDSKNSSAK SLVAEIKELK EKSQNEDDIL LSISAGYRQP INPNLDYEYF SRDMHEDLYK LVHFSCEELC
0601: STKEQLSKVL RLWENFLEPV LGVPPRAKGT DPVEDVPKTL DVNHSTSTNE EANGSCGADT ATLASRKLIS VANGDQNASS GASNLGEIGL LNKDSTGKDD
0701: LQDADTANGD GVTSSAVKLQ KKHKTGNRAD QRSVMPTPMD INERASTSNL STPSGENNHG VLEKEDLAGS HEIQAKPSNT LSDIHHIKTS PSTQAGDGGK
0801: SIALASGIRS DSSTDNMNSD EPEGALTIEK EEGELSPNGD FDDNVGFHED LGVKSTSKPE NLADAEVENE DEDSENASEG GEECSHDENR EEESGEHDEV
0901: DGKAESEGEA EEVDSHSLAG DTELLRQSER VLLSARPLSK HVAAVLRDGR TKDIRVFYGN DDFYVLFRLH QILYERILSA KRNCSGDELK SKNSKDTDSL
1001: DPYARFMKGL YGLLDGSVEN TKFEDECRAI FGNQSYVLFT LNKVMYKLVK QLQAVVADEM DNKLIQLYEY EKSRKPGRVI DSVYYENARV LLHDENVYRL
1101: ECSSSPSRLS IQLMDNIVEK PEPYAVSMDP MFASYLQTEF LSTSREKKEE GHNIVLRRNR RPYSGLDDLA ALCKAMEGVE VVNGLECKMS CSSYKVSYVL
1201: DTEDFFHRKK KKKKKIEHIS QQRSKDRVER FHRFLSASR
0001: MVGGSSAQKL TTNDALAYLK AVKDKFQDKR DKYDEFLEVM KDFKAQRVDT TGVILRVKEL FKGNRELILG FNTFLPKGFE ITLRPEDDQP AAPKKPVEFE
0101: EAISFVNKIK TRFQGDDRVY KSFLDILNMY RKENKSITEV YHEVAILFRD HHDLLGEFTH FLPDTSATAS TNDSVKVPVR DRGIKSLPTM RQIDLDKKDR
0201: IITSHPNRAL KTENMDVDHE RSLLKDSKEE VRRIDKKNDF MDDRDRKDYR GLDHDSHKEH FFNSKKKLIR KDDDSAEMSD QAREGDKFSG AIPSSSTYDE
0301: KGHSQELAFV DRVKAKLDTA DNQEFLRCLN LYSKEIISQP ELQSLVSDLI GVYPDLMDAF KVFLAQCDKN DGLLSGIVSK KSLWSEGKCP QPTKSLDKDT
0401: DREREKIERY RERDREKERL EKVAASQKWA KPISELDLSN CEQCTPSYRR LPKNYPIPIA SQKMEIGSQV LNDHWVSVTS GSEDYSFKHM RKNQYEESLF
0501: KCEDDRFELD MLLESVISAT NRVEELLAKI NSNELKTDTP ICIEDHLTAL NLRCIERLYS DHGLDVLDLL KKNAYLALPV ILTRLKQKQE EWARCRTEFN
0601: KVWADIYTKN YHRSLDHRSF YFKQQDSKNL STKALLAEIK EISEKKRGED DALLALAAGN RRTISSNMSF DYPDPDLHED LYQLIKYSCG EMCSTEQLDK
0701: VMKVWTEFLE PIFGVPSRPQ GAEDREDAVK STNHDREDQE DAVSPQNGAS IANSMRSNGP RKVNESNQVR QASELDKDVT SSKTSDALLS CDNTQNDKMP
0801: KNLTTPDERA ETKQAVSIER AHNSNALPLD GLLPQRNGKI SSLSVAGLSN SNPKPALTSG TEELKPNYVN GPRVEIGDNP VIPNGTVAEW FAGEAKVERE
0901: EGELSPTGDF EEDNYAVHGE NDMEALSKSK ENDATADDAS APRSSDGSGN TSHNGDVSGT DSGDGEDCYR EDDIDHNKVE SEGEAEEGMS DGHDDTEGDM
1001: PVLSISVKNL LHVKPLAKYV PPALYDKDND DSRKNSQVFY GNDSFYVLFR LHQILYDRIL SAKINSSSPD RKWKTSNPTN PADSYARIMD ALYNLLDGTS
1101: DNSKFEDDCR AIIGTQSYVL FTLDKLIYKL IKHLQAVAAD EMDNKLQQLY AYEKSRKPEK FLDAVYYENA LVLLPDEDIY RIECEQSTPS KLSIQLLDYG
1201: HDKPDVTSIS MDPTFAAYLH NVFLSYQPNA KENPRIYLKR NKRKNGGDDE LCTTDEVKII NGLECKITCS SSKVSYVLDT EDVLHRAKRR KLLNQSGLPL
1301: AHDSVCSGSL IRQRRTQRYQ KLLTGQ
0101: EAISFVNKIK TRFQGDDRVY KSFLDILNMY RKENKSITEV YHEVAILFRD HHDLLGEFTH FLPDTSATAS TNDSVKVPVR DRGIKSLPTM RQIDLDKKDR
0201: IITSHPNRAL KTENMDVDHE RSLLKDSKEE VRRIDKKNDF MDDRDRKDYR GLDHDSHKEH FFNSKKKLIR KDDDSAEMSD QAREGDKFSG AIPSSSTYDE
0301: KGHSQELAFV DRVKAKLDTA DNQEFLRCLN LYSKEIISQP ELQSLVSDLI GVYPDLMDAF KVFLAQCDKN DGLLSGIVSK KSLWSEGKCP QPTKSLDKDT
0401: DREREKIERY RERDREKERL EKVAASQKWA KPISELDLSN CEQCTPSYRR LPKNYPIPIA SQKMEIGSQV LNDHWVSVTS GSEDYSFKHM RKNQYEESLF
0501: KCEDDRFELD MLLESVISAT NRVEELLAKI NSNELKTDTP ICIEDHLTAL NLRCIERLYS DHGLDVLDLL KKNAYLALPV ILTRLKQKQE EWARCRTEFN
0601: KVWADIYTKN YHRSLDHRSF YFKQQDSKNL STKALLAEIK EISEKKRGED DALLALAAGN RRTISSNMSF DYPDPDLHED LYQLIKYSCG EMCSTEQLDK
0701: VMKVWTEFLE PIFGVPSRPQ GAEDREDAVK STNHDREDQE DAVSPQNGAS IANSMRSNGP RKVNESNQVR QASELDKDVT SSKTSDALLS CDNTQNDKMP
0801: KNLTTPDERA ETKQAVSIER AHNSNALPLD GLLPQRNGKI SSLSVAGLSN SNPKPALTSG TEELKPNYVN GPRVEIGDNP VIPNGTVAEW FAGEAKVERE
0901: EGELSPTGDF EEDNYAVHGE NDMEALSKSK ENDATADDAS APRSSDGSGN TSHNGDVSGT DSGDGEDCYR EDDIDHNKVE SEGEAEEGMS DGHDDTEGDM
1001: PVLSISVKNL LHVKPLAKYV PPALYDKDND DSRKNSQVFY GNDSFYVLFR LHQILYDRIL SAKINSSSPD RKWKTSNPTN PADSYARIMD ALYNLLDGTS
1101: DNSKFEDDCR AIIGTQSYVL FTLDKLIYKL IKHLQAVAAD EMDNKLQQLY AYEKSRKPEK FLDAVYYENA LVLLPDEDIY RIECEQSTPS KLSIQLLDYG
1201: HDKPDVTSIS MDPTFAAYLH NVFLSYQPNA KENPRIYLKR NKRKNGGDDE LCTTDEVKII NGLECKITCS SSKVSYVLDT EDVLHRAKRR KLLNQSGLPL
1301: AHDSVCSGSL IRQRRTQRYQ KLLTGQ
Arabidopsis Description
SNL4Paired amphipathic helix protein Sin3-like 4 [Source:UniProtKB/Swiss-Prot;Acc:O04539]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.