Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- mitochondrion 2
Predictors | GFP | MS/MS | Papers | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
CDY42979 | Canola | cytosol, mitochondrion, nucleus | 86.88 | 95.86 |
CDY42981 | Canola | mitochondrion | 95.0 | 95.0 |
CDY66875 | Canola | mitochondrion | 94.38 | 94.38 |
CDY03764 | Canola | cytosol | 91.88 | 90.74 |
CDY42983 | Canola | nucleus | 73.12 | 72.22 |
CDY67989 | Canola | nucleus | 47.5 | 48.72 |
CDY42986 | Canola | cytosol | 56.25 | 43.06 |
CDY03763 | Canola | cytosol | 73.75 | 41.4 |
CDY23529 | Canola | cytosol | 35.0 | 35.44 |
CDY48381 | Canola | cytosol | 33.75 | 34.84 |
CDY23528 | Canola | cytosol | 33.75 | 34.84 |
AT5G15040.2 | Thale cress | cytoskeleton, cytosol, nucleus | 18.75 | 34.48 |
CDY48380 | Canola | cytosol | 33.75 | 34.18 |
CDY28457 | Canola | cytoskeleton, cytosol, nucleus | 15.0 | 28.57 |
CDY14679 | Canola | cytosol, mitochondrion, nucleus | 15.62 | 27.78 |
CDY16234 | Canola | cytosol, mitochondrion, nucleus | 15.62 | 27.78 |
CDY40291 | Canola | cytoskeleton, cytosol, nucleus | 14.38 | 26.74 |
CDY06480 | Canola | cytosol | 35.0 | 23.73 |
AT5G15030.1 | Thale cress | endoplasmic reticulum | 20.0 | 23.02 |
CDY08302 | Canola | cytosol | 35.62 | 22.27 |
CDY08301 | Canola | cytosol | 35.62 | 20.5 |
VIT_17s0000g07540.t01 | Wine grape | nucleus | 22.5 | 19.35 |
CDY31594 | Canola | nucleus | 38.12 | 15.37 |
CDY55066 | Canola | cytosol | 37.5 | 15.08 |
CDY16235 | Canola | mitochondrion | 28.12 | 13.39 |
CDY14678 | Canola | cytosol | 27.5 | 12.72 |
CDY64433 | Canola | cytosol | 20.0 | 12.08 |
CDY45153 | Canola | nucleus | 41.25 | 6.82 |
CDY37976 | Canola | nucleus | 38.75 | 6.28 |
CDY30912 | Canola | nucleus | 40.62 | 6.19 |
CDX93425 | Canola | nucleus | 38.75 | 6.1 |
CDY24499 | Canola | nucleus | 39.38 | 5.68 |
CDY33612 | Canola | nucleus | 39.38 | 5.46 |
CDY11625 | Canola | nucleus | 39.38 | 4.88 |
CDX68358 | Canola | nucleus | 38.75 | 4.83 |
CDY38781 | Canola | nucleus | 38.75 | 4.81 |
CDY23527 | Canola | nucleus | 38.75 | 4.79 |
CDX91007 | Canola | nucleus | 38.75 | 4.69 |
CDX85568 | Canola | nucleus | 38.75 | 4.64 |
CDY28683 | Canola | mitochondrion, nucleus | 38.75 | 4.61 |
CDX78604 | Canola | nucleus | 38.75 | 4.59 |
CDX70587 | Canola | nucleus | 38.75 | 4.58 |
CDY71516 | Canola | cytosol, mitochondrion, nucleus | 2.5 | 1.54 |
CDY28682 | Canola | nucleus | 0.62 | 0.08 |
CDY55065 | Canola | nucleus | 0.0 | 0.0 |
CDY31595 | Canola | nucleus | 0.0 | 0.0 |
CDY64434 | Canola | nucleus | 0.0 | 0.0 |
CDY70453 | Canola | cytosol | 0.0 | 0.0 |
Protein Annotations
Gene3D:1.20.1160.11 | MapMan:35.1 | GO:A0A078I085 | UniProt:A0A078I085 | EnsemblPlants:CDY42984 | ProteinID:CDY42984 |
ProteinID:CDY42984.1 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00075768001 |
InterPro:IPR003822 | InterPro:PAH | InterPro:PAH_sf | PFAM:PF02671 | PFscan:PS51477 | PANTHER:PTHR12346 |
PANTHER:PTHR12346:SF8 | SUPFAM:SSF47762 | UniParc:UPI0004EEDBFC | : | : | : |
Description
BnaC02g19580DBnaC02g19580D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I085]
Coordinates
chrLK032541:+:24242..25152
Molecular Weight (calculated)
19221.4 Da
IEP (calculated)
10.068
GRAVY (calculated)
-0.617
Length
160 amino acids
Sequence
(BLAST)
(BLAST)
001: MIIKRQSTRD VREYLQIVLN RFPDNCEIYD KITKLLKDLR LARVRSTYND VISKVSQLFK EHKDLLLGIN KFLPLGYKIT LPKDQTQRRK PEFRDAAEFI
101: NKVKERLQDE HSYKSLLEIL RKFRENKKSL TEVHHEVLYA LQDHQDLCVD FAAFLPARYR
101: NKVKERLQDE HSYKSLLEIL RKFRENKKSL TEVHHEVLYA LQDHQDLCVD FAAFLPARYR
001: MVANKKLTTT DALDFLHLVK TKYQDNREIY DSFLTIMKDF RGQRAKTCDV ISKVKELFKG QPELLLGFNT FLPTGFEITL SDDELTSNSK FAHFDEAYEF
101: VNKVKTRFQN NDVFNSFLEV LKTHKKENKS VAELYQEVAI LFQGHRDLLE EFHLFLPHYG
101: VNKVKTRFQN NDVFNSFLEV LKTHKKENKS VAELYQEVAI LFQGHRDLLE EFHLFLPHYG
Arabidopsis Description
Paired amphipathic helix (PAH2) superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q84R24]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.