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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion, nucleus, cytosol

Predictor Summary:
  • nucleus 2
  • cytosol 1
  • mitochondrion 2
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY42979 Canola cytosol, mitochondrion, nucleus 86.88 95.86
CDY42981 Canola mitochondrion 95.0 95.0
CDY66875 Canola mitochondrion 94.38 94.38
CDY03764 Canola cytosol 91.88 90.74
CDY42983 Canola nucleus 73.12 72.22
CDY67989 Canola nucleus 47.5 48.72
CDY42986 Canola cytosol 56.25 43.06
CDY03763 Canola cytosol 73.75 41.4
CDY23529 Canola cytosol 35.0 35.44
CDY48381 Canola cytosol 33.75 34.84
CDY23528 Canola cytosol 33.75 34.84
AT5G15040.2 Thale cress cytoskeleton, cytosol, nucleus 18.75 34.48
CDY48380 Canola cytosol 33.75 34.18
CDY28457 Canola cytoskeleton, cytosol, nucleus 15.0 28.57
CDY14679 Canola cytosol, mitochondrion, nucleus 15.62 27.78
CDY16234 Canola cytosol, mitochondrion, nucleus 15.62 27.78
CDY40291 Canola cytoskeleton, cytosol, nucleus 14.38 26.74
CDY06480 Canola cytosol 35.0 23.73
AT5G15030.1 Thale cress endoplasmic reticulum 20.0 23.02
CDY08302 Canola cytosol 35.62 22.27
CDY08301 Canola cytosol 35.62 20.5
VIT_17s0000g07540.t01 Wine grape nucleus 22.5 19.35
CDY31594 Canola nucleus 38.12 15.37
CDY55066 Canola cytosol 37.5 15.08
CDY16235 Canola mitochondrion 28.12 13.39
CDY14678 Canola cytosol 27.5 12.72
CDY64433 Canola cytosol 20.0 12.08
CDY45153 Canola nucleus 41.25 6.82
CDY37976 Canola nucleus 38.75 6.28
CDY30912 Canola nucleus 40.62 6.19
CDX93425 Canola nucleus 38.75 6.1
CDY24499 Canola nucleus 39.38 5.68
CDY33612 Canola nucleus 39.38 5.46
CDY11625 Canola nucleus 39.38 4.88
CDX68358 Canola nucleus 38.75 4.83
CDY38781 Canola nucleus 38.75 4.81
CDY23527 Canola nucleus 38.75 4.79
CDX91007 Canola nucleus 38.75 4.69
CDX85568 Canola nucleus 38.75 4.64
CDY28683 Canola mitochondrion, nucleus 38.75 4.61
CDX78604 Canola nucleus 38.75 4.59
CDX70587 Canola nucleus 38.75 4.58
CDY71516 Canola cytosol, mitochondrion, nucleus 2.5 1.54
CDY28682 Canola nucleus 0.62 0.08
CDY55065 Canola nucleus 0.0 0.0
CDY31595 Canola nucleus 0.0 0.0
CDY64434 Canola nucleus 0.0 0.0
CDY70453 Canola cytosol 0.0 0.0
Protein Annotations
Gene3D:1.20.1160.11MapMan:35.1GO:A0A078I085UniProt:A0A078I085EnsemblPlants:CDY42984ProteinID:CDY42984
ProteinID:CDY42984.1GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0006139
GO:GO:0006355GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009987EnsemblPlantsGene:GSBRNA2T00075768001
InterPro:IPR003822InterPro:PAHInterPro:PAH_sfPFAM:PF02671PFscan:PS51477PANTHER:PTHR12346
PANTHER:PTHR12346:SF8SUPFAM:SSF47762UniParc:UPI0004EEDBFC:::
Description
BnaC02g19580DBnaC02g19580D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I085]
Coordinates
chrLK032541:+:24242..25152
Molecular Weight (calculated)
19221.4 Da
IEP (calculated)
10.068
GRAVY (calculated)
-0.617
Length
160 amino acids
Sequence
(BLAST)
001: MIIKRQSTRD VREYLQIVLN RFPDNCEIYD KITKLLKDLR LARVRSTYND VISKVSQLFK EHKDLLLGIN KFLPLGYKIT LPKDQTQRRK PEFRDAAEFI
101: NKVKERLQDE HSYKSLLEIL RKFRENKKSL TEVHHEVLYA LQDHQDLCVD FAAFLPARYR
Best Arabidopsis Sequence Match ( AT1G70030.1 )
(BLAST)
001: MVANKKLTTT DALDFLHLVK TKYQDNREIY DSFLTIMKDF RGQRAKTCDV ISKVKELFKG QPELLLGFNT FLPTGFEITL SDDELTSNSK FAHFDEAYEF
101: VNKVKTRFQN NDVFNSFLEV LKTHKKENKS VAELYQEVAI LFQGHRDLLE EFHLFLPHYG
Arabidopsis Description
Paired amphipathic helix (PAH2) superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q84R24]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.