CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 2
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
Predotar:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY42984	Canola	cytosol, mitochondrion, nucleus	43.06	56.25
CDY42981	Canola	mitochondrion	42.58	55.62
CDY66875	Canola	mitochondrion	42.58	55.62
CDY03764	Canola	cytosol	42.58	54.94
CDY42979	Canola	cytosol, mitochondrion, nucleus	37.8	54.48
CDY03763	Canola	cytosol	70.81	51.93
CDY42983	Canola	nucleus	37.8	48.77
CDY67989	Canola	nucleus	23.45	31.41
CDY23529	Canola	cytosol	18.18	24.05
CDY48380	Canola	cytosol	17.7	23.42
CDY48381	Canola	cytosol	15.31	20.65
CDY23528	Canola	cytosol	15.31	20.65
AT5G15040.2	Thale cress	cytoskeleton, cytosol, nucleus	8.13	19.54
CDY06480	Canola	cytosol	16.75	14.83
CDY08302	Canola	cytosol	17.7	14.45
CDY14679	Canola	cytosol, mitochondrion, nucleus	6.22	14.44
CDY16234	Canola	cytosol, mitochondrion, nucleus	6.22	14.44
CDY28457	Canola	cytoskeleton, cytosol, nucleus	5.74	14.29
CDY40291	Canola	cytoskeleton, cytosol, nucleus	5.74	13.95
AT5G15030.1	Thale cress	endoplasmic reticulum	9.09	13.67
CDY08301	Canola	cytosol	17.22	12.95
VIT_17s0000g07540.t01	Wine grape	nucleus	11.48	12.9
CDY31594	Canola	nucleus	20.1	10.58
CDY55066	Canola	cytosol	19.14	10.05
CDY16235	Canola	mitochondrion	14.83	9.23
CDY14678	Canola	cytosol	14.83	8.96
CDY64433	Canola	cytosol	9.09	7.17
CDY37976	Canola	nucleus	23.45	4.96
CDX93425	Canola	nucleus	23.92	4.92
CDY30912	Canola	nucleus	22.49	4.48
CDY45153	Canola	nucleus	20.57	4.44
CDY24499	Canola	nucleus	23.45	4.42
CDY33612	Canola	nucleus	23.45	4.25
CDX91007	Canola	nucleus	24.88	3.93
CDX85568	Canola	nucleus	24.88	3.89
CDX78604	Canola	nucleus	24.88	3.85
CDX70587	Canola	nucleus	24.88	3.84
CDY11625	Canola	nucleus	23.45	3.8
CDY38781	Canola	nucleus	22.97	3.72
CDY28683	Canola	mitochondrion, nucleus	23.92	3.71
CDX68358	Canola	nucleus	22.49	3.66
CDY23527	Canola	nucleus	22.01	3.55
CDY71516	Canola	cytosol, mitochondrion, nucleus	4.31	3.46
CDY70453	Canola	cytosol	2.39	1.49
CDY28682	Canola	nucleus	5.26	0.89
CDY31595	Canola	nucleus	2.39	0.72
CDY55065	Canola	nucleus	2.39	0.72
CDY64434	Canola	nucleus	0.0	0.0

Protein Annotations

EnsemblPlants:CDY42986	EnsemblPlantsGene:GSBRNA2T00075771001	Gene3D:1.20.1160.11	GO:A0A078HZG0	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:PAH_sf	PANTHER:PTHR12346
PANTHER:PTHR12346:SF8	ProteinID:CDY42986	ProteinID:CDY42986.1	SUPFAM:SSF47762	UniParc:UPI0004EEBAA4	UniProt:A0A078HZG0
MapMan:35.1	:	:	:	:	:

Description

BnaC02g19600DBnaC02g19600D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HZG0]

Coordinates

chrLK032541:+:31577..33679

Molecular Weight (calculated)

24740.3 Da

IEP (calculated)

7.274

GRAVY (calculated)

-0.886

Length

209 amino acids

Sequence
(BLAST)

001: MIIKRQSTRD VREYLQIVLN RFPDNCEIYD KITKLLKNLR LARYFLFEKI NGVLIAKPEF RDASEFLNKV KERLQDEHAY KSLLEILRMF KENKKNFTEV
101: HHEKDRIIAS HTDSDLKPEH RDLDHERSSL KESKEDIRHI GTKNDISKKK LTLTADDSPE ISNQAREGDK FCGAVDSQGM SKDFAFVDRV KEKLNNSEYQ
201: EFFEIHDYG

Best Arabidopsis Sequence Match ( AT1G70060.1 )
(BLAST)

0001: MVGGSSAQKL TTNDALAYLK AVKDKFQDKR DKYDEFLEVM KDFKAQRVDT TGVILRVKEL FKGNRELILG FNTFLPKGFE ITLRPEDDQP AAPKKPVEFE
0101: EAISFVNKIK TRFQGDDRVY KSFLDILNMY RKENKSITEV YHEVAILFRD HHDLLGEFTH FLPDTSATAS TNDSVKVPVR DRGIKSLPTM RQIDLDKKDR
0201: IITSHPNRAL KTENMDVDHE RSLLKDSKEE VRRIDKKNDF MDDRDRKDYR GLDHDSHKEH FFNSKKKLIR KDDDSAEMSD QAREGDKFSG AIPSSSTYDE
0301: KGHSQELAFV DRVKAKLDTA DNQEFLRCLN LYSKEIISQP ELQSLVSDLI GVYPDLMDAF KVFLAQCDKN DGLLSGIVSK KSLWSEGKCP QPTKSLDKDT
0401: DREREKIERY RERDREKERL EKVAASQKWA KPISELDLSN CEQCTPSYRR LPKNYPIPIA SQKMEIGSQV LNDHWVSVTS GSEDYSFKHM RKNQYEESLF
0501: KCEDDRFELD MLLESVISAT NRVEELLAKI NSNELKTDTP ICIEDHLTAL NLRCIERLYS DHGLDVLDLL KKNAYLALPV ILTRLKQKQE EWARCRTEFN
0601: KVWADIYTKN YHRSLDHRSF YFKQQDSKNL STKALLAEIK EISEKKRGED DALLALAAGN RRTISSNMSF DYPDPDLHED LYQLIKYSCG EMCSTEQLDK
0701: VMKVWTEFLE PIFGVPSRPQ GAEDREDAVK STNHDREDQE DAVSPQNGAS IANSMRSNGP RKVNESNQVR QASELDKDVT SSKTSDALLS CDNTQNDKMP
0801: KNLTTPDERA ETKQAVSIER AHNSNALPLD GLLPQRNGKI SSLSVAGLSN SNPKPALTSG TEELKPNYVN GPRVEIGDNP VIPNGTVAEW FAGEAKVERE
0901: EGELSPTGDF EEDNYAVHGE NDMEALSKSK ENDATADDAS APRSSDGSGN TSHNGDVSGT DSGDGEDCYR EDDIDHNKVE SEGEAEEGMS DGHDDTEGDM
1001: PVLSISVKNL LHVKPLAKYV PPALYDKDND DSRKNSQVFY GNDSFYVLFR LHQILYDRIL SAKINSSSPD RKWKTSNPTN PADSYARIMD ALYNLLDGTS
1101: DNSKFEDDCR AIIGTQSYVL FTLDKLIYKL IKHLQAVAAD EMDNKLQQLY AYEKSRKPEK FLDAVYYENA LVLLPDEDIY RIECEQSTPS KLSIQLLDYG
1201: HDKPDVTSIS MDPTFAAYLH NVFLSYQPNA KENPRIYLKR NKRKNGGDDE LCTTDEVKII NGLECKITCS SSKVSYVLDT EDVLHRAKRR KLLNQSGLPL
1301: AHDSVCSGSL IRQRRTQRYQ KLLTGQ

Arabidopsis Description

SNL4Paired amphipathic helix protein Sin3-like 4 [Source:UniProtKB/Swiss-Prot;Acc:O04539]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.