Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1B01G002000.1 | Wheat | nucleus | 94.5 | 98.0 |
| TraesCS1A01G002700.1 | Wheat | nucleus | 97.03 | 97.97 |
| HORVU1Hr1G000290.3 | Barley | nucleus | 93.75 | 94.74 |
| Os05t0100500-01 | Rice | plastid | 18.51 | 67.66 |
| TraesCS3D01G007600.2 | Wheat | nucleus, plastid | 65.72 | 64.1 |
| KXG20992 | Sorghum | nucleus | 58.66 | 63.22 |
| Zm00001d035776_P004 | Maize | nucleus | 58.22 | 62.09 |
| GSMUA_Achr1P20690_001 | Banana | nucleus | 61.64 | 61.82 |
| GSMUA_Achr9P00800_001 | Banana | nucleus | 62.53 | 60.24 |
| GSMUA_Achr11P... | Banana | nucleus | 59.41 | 57.98 |
| GSMUA_Achr2P09580_001 | Banana | nucleus | 57.84 | 57.12 |
| VIT_01s0026g01010.t01 | Wine grape | nucleus | 61.49 | 57.0 |
| CDY23529 | Canola | cytosol | 6.47 | 55.06 |
| CDY48380 | Canola | cytosol | 6.39 | 54.43 |
| KRH69432 | Soybean | nucleus | 57.17 | 53.78 |
| KRH74716 | Soybean | nucleus | 52.12 | 53.31 |
| AT1G70030.1 | Thale cress | cytosol | 6.25 | 52.5 |
| CDY48381 | Canola | cytosol | 6.02 | 52.26 |
| CDY23528 | Canola | cytosol | 6.02 | 52.26 |
| Bra003968.1-P | Field mustard | cytosol | 6.02 | 52.26 |
| AT1G24200.1 | Thale cress | cytosol | 7.58 | 52.04 |
| CDY38781 | Canola | nucleus | 49.37 | 51.51 |
| Bra016241.1-P | Field mustard | nucleus | 49.29 | 51.44 |
| CDY11625 | Canola | nucleus | 49.15 | 51.24 |
| CDY23527 | Canola | nucleus | 49.07 | 51.0 |
| CDX68358 | Canola | nucleus | 48.62 | 50.93 |
| AT1G70060.2 | Thale cress | nucleus | 49.81 | 50.53 |
| Bra003967.1-P | Field mustard | nucleus | 48.55 | 49.66 |
| AT1G24190.3 | Thale cress | nucleus | 49.15 | 49.4 |
| TraesCS3D01G007000.1 | Wheat | cytosol | 5.06 | 36.17 |
| Zm00001d041450_P002 | Maize | nucleus | 20.74 | 35.5 |
| TraesCS1D01G438700.1 | Wheat | cytosol | 11.45 | 30.86 |
| Zm00001d041453_P001 | Maize | nucleus | 24.01 | 27.97 |
| TraesCS1D01G438600.1 | Wheat | nucleus | 14.94 | 25.77 |
Protein Annotations
| Gene3D:1.20.1160.11 | MapMan:12.3.2.4.2 | ncoils:Coil | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:HDAC_interact_dom | InterPro:IPR003822 | InterPro:PAH |
| InterPro:PAH_sf | PFAM:PF02671 | PFAM:PF08295 | PFAM:PF16879 | PFscan:PS51477 | PANTHER:PTHR12346 |
| PANTHER:PTHR12346:SF21 | SMART:SM00761 | SUPFAM:SSF47762 | InterPro:Sin3_C | EnsemblPlantsGene:TraesCS1D01G004900 | EnsemblPlants:TraesCS1D01G004900.4 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr1D:-:2219493..2230259
Molecular Weight (calculated)
151351.0 Da
IEP (calculated)
5.753
GRAVY (calculated)
-0.736
Length
1345 amino acids
Sequence
(BLAST)
(BLAST)
0001: MSPPPASPAL SAQKLTTNDA LAYLKAVKDK FHDNRAKYDE FLEVMRDFKS ASFPLCLCDG RGRIDTAGVI IRVKTLFSGY PELILGFNAF LPKGFAIKLQ
0101: DIDGTAGDKK QPVDFMEAIN FVNKIKARFQ AQDHVYKAFL AILNMYRMHN KSIQDVYQEV ATLFHDHPDL LEEFKHFLPD TSNAPQVLAA PKAVSAKQET
0201: AAVPSASARN VQSIKRERPQ PSTAERDSSV DRPDLEHDPD RKRVDKEKDR KIDRDRKDHD KDAEYESKDL DGGLRKRKAF SKKLEGETHQ GAASISASSY
0301: NDNDALKSAY TQEFLFCEKV KEKLEPEAYQ EFLKCLHIYS QEIITRSELK NLVHDILQRY PELMTGFSEF LEHCENIDGF LDGVINKRQT SRTVKALEKE
0401: RDKGRAGEDR ERDAEKPSEK ERERLDKVSA LNSKEATIHK ATTFSAKEKY LCKPISELDL SNCQRCTPSY RLLPKNYPVP ASSCRTDLGI SVLNDHWVSV
0501: TSGSEDYSFK HMRKNQYEES LFRCEDDRFE LDMLLESVNV AIKRVEELIE KMQENSIKPD SPIRIDEHLT SLNLRCIERL YGDHGLDVMD VLRKNASVAL
0601: PVILTRLKQK QEEWSRCRSD FNKVWAEIYA KNYHKSLDHR SFYFKQQDTK NLSTRALLSE IKEINEKKRK EDDVLLAIAA GNRRPIVPNM SFEYVDSEIH
0701: EDVYQIIKYS CGEVCSSPDQ VDKVMRTWTT FVEPILGVQP RTPAVEDASV VKSKSRTPTT GLASAGESNN VIPNGAVTVK QANRDESIPK EQAQSSRGLL
0801: ANGVSEDAQN GFHDADRTVR RGEGPSNMSL HQTEQNQRRT NMELTSGTNS SRDNFSGSEA VVEAMGGNET IPSIGRGEAG RPGSVPQKNS KVEREEGELS
0901: PNGDFEEDNF GPLGNAAVDG ASKPKEVSAG RTRAAEFAGA NDADADDEGD ESAQRSTESE NASEAGEDAS GSESGDGEEC SREDNEDEED ADHDDPDAKV
1001: ESEGEAEGNT EAHDADGGMS LPFSERLHNT VRPLAKHVPT ALQDHGGKFS RIFYGNDSFY VLFRLHQILY ERLLSAKTNS STAEKKWRTS KDTSSPHQYS
1101: KFMGALYNLI DGSSDNTKFE DDCRSIIGTQ SYVLFTLDKL IYKVVKQLQA IAADEMDNKL LQLYIYEKSR SPGRFFDLVY HENARVLLHD ESIYRFERRS
1201: NPTRLSVQLM EYGHEKPEVT AVSIDPNFSS YLYDEYLSSI SDSKVSEDVF LERNKRKRGS SNGPQASLAV MDGFKVANGL ECKITCKSSK VSYVLDTEDF
1301: LFRMRNRRRI SSGATAAAAP GKADFVKAAD VVKAQRFHKF LLSRS
0101: DIDGTAGDKK QPVDFMEAIN FVNKIKARFQ AQDHVYKAFL AILNMYRMHN KSIQDVYQEV ATLFHDHPDL LEEFKHFLPD TSNAPQVLAA PKAVSAKQET
0201: AAVPSASARN VQSIKRERPQ PSTAERDSSV DRPDLEHDPD RKRVDKEKDR KIDRDRKDHD KDAEYESKDL DGGLRKRKAF SKKLEGETHQ GAASISASSY
0301: NDNDALKSAY TQEFLFCEKV KEKLEPEAYQ EFLKCLHIYS QEIITRSELK NLVHDILQRY PELMTGFSEF LEHCENIDGF LDGVINKRQT SRTVKALEKE
0401: RDKGRAGEDR ERDAEKPSEK ERERLDKVSA LNSKEATIHK ATTFSAKEKY LCKPISELDL SNCQRCTPSY RLLPKNYPVP ASSCRTDLGI SVLNDHWVSV
0501: TSGSEDYSFK HMRKNQYEES LFRCEDDRFE LDMLLESVNV AIKRVEELIE KMQENSIKPD SPIRIDEHLT SLNLRCIERL YGDHGLDVMD VLRKNASVAL
0601: PVILTRLKQK QEEWSRCRSD FNKVWAEIYA KNYHKSLDHR SFYFKQQDTK NLSTRALLSE IKEINEKKRK EDDVLLAIAA GNRRPIVPNM SFEYVDSEIH
0701: EDVYQIIKYS CGEVCSSPDQ VDKVMRTWTT FVEPILGVQP RTPAVEDASV VKSKSRTPTT GLASAGESNN VIPNGAVTVK QANRDESIPK EQAQSSRGLL
0801: ANGVSEDAQN GFHDADRTVR RGEGPSNMSL HQTEQNQRRT NMELTSGTNS SRDNFSGSEA VVEAMGGNET IPSIGRGEAG RPGSVPQKNS KVEREEGELS
0901: PNGDFEEDNF GPLGNAAVDG ASKPKEVSAG RTRAAEFAGA NDADADDEGD ESAQRSTESE NASEAGEDAS GSESGDGEEC SREDNEDEED ADHDDPDAKV
1001: ESEGEAEGNT EAHDADGGMS LPFSERLHNT VRPLAKHVPT ALQDHGGKFS RIFYGNDSFY VLFRLHQILY ERLLSAKTNS STAEKKWRTS KDTSSPHQYS
1101: KFMGALYNLI DGSSDNTKFE DDCRSIIGTQ SYVLFTLDKL IYKVVKQLQA IAADEMDNKL LQLYIYEKSR SPGRFFDLVY HENARVLLHD ESIYRFERRS
1201: NPTRLSVQLM EYGHEKPEVT AVSIDPNFSS YLYDEYLSSI SDSKVSEDVF LERNKRKRGS SNGPQASLAV MDGFKVANGL ECKITCKSSK VSYVLDTEDF
1301: LFRMRNRRRI SSGATAAAAP GKADFVKAAD VVKAQRFHKF LLSRS
0001: MVGGGSAQKL TTNDALAYLK AVKDKFQDQR GKYDEFLEVM KNFKSQRVDT AGVITRVKEL FKGHQELILG FNTFLPKGFE ITLQPEDGQP PLKKRVEFEE
0101: AISFVNKIKT RFQGDDRVYK SFLDILNMYR RDSKSITEVY QEVAILFRDH SDLLVEFTHF LPDTSATASI PSVKTSVRER GVSLADKKDR IITPHPDHDY
0201: GTEHIDQDRE RPIKKENKEH MRGTNKENEH RDARDFEPHS KKEQFLNKKQ KLHIRGDDPA EISNQSKLSG AVPSSSTYDE KGAMKSYSQD LAIVDRVKEK
0301: LNASEYQEFL RCLNLFSKEI ISRPELQSLV GNLIGVYPDL MDSFIEFLVQ CEKNEGLLSG ILTKSKSTYL LQGEGKYPQP SLDNDRDQEH KRDDGLRDRD
0401: HEKERLEKAA ANLKWAKPIS ELDLSNCEQC TPSYRLLPKN YPISIASQKT EIGKLVLNDH WVSVTSGSED YSFSHMRKNQ YEESLFKCED DRFELDMLLE
0501: SVNSTTKHVE ELLTKINSNE LKTNSPIRVE DHLTALNLRC IERLYGDHGL DVMDVLKKNV SLALPVILTR LKQKQEEWAR CRSDFDKVWA EIYAKNYYKS
0601: LDHRSFYFKQ QDSKKLSMKA LLAEIKEITE KKREDDSLLA FAAGNRLSIS PDLEFDYPDH DLHEDLYQLI KYSCAEMCST EQLDKVMKIW TTFVEQIFGV
0701: PSRPQGAEDQ EDVVKSMNQN VKSGSSSAGE SEGSPHNYAS VADSRRSKSS RKANEHSQLG QTSNSERDGA AGRTSDALCE TAQHEKMLKN VVTSDEKPES
0801: KQAVSIERAH DSTALAVDGL LDQSNGGSSI VHMTGHCNNN LKPVTCGTEL ELKMNDGNGP KLEVGNKKLL TNGIAVEITS DQEMAGTSKV EREEGELSPN
0901: GDFEEDNFAV YAKTDFETFS KANDSTGNNI SGDRSREGEP SCLETRAEND AEGDENAARS SEDSRNEYEN GDVSGTESGG GEDPEDDLDN NNKGESEGEA
1001: ECMADAHDAE ENGSALPVSA RFLLHVKPLV KYVPSAIALH DKDKDSLKNS QVFYGNDSFY VLFRLHRILY ERILSAKVNS SSPEGKWRTS NTKNPTDSYA
1101: RFMTALYNLL DGTSDNAKFE DDCRAIIGTQ SYILFTLDKL IHKFIKHLQV VVADEMDNKL LQLYFYEKSR RPETIFDAVY YDNTRVLLPD ENIYRIECRL
1201: STPAKLSIQL MCNGLDKPDV TSVSIDPTFA AYLHNDFLSI QPNAREDRRI YLNRNKRKVC REDEQLYSTD EVKIKNGLEC KIACGSSKVS YVLETEDLLV
1301: RVKKRRKTLC HNQDSWVRQM RLQYYKNNFL
0101: AISFVNKIKT RFQGDDRVYK SFLDILNMYR RDSKSITEVY QEVAILFRDH SDLLVEFTHF LPDTSATASI PSVKTSVRER GVSLADKKDR IITPHPDHDY
0201: GTEHIDQDRE RPIKKENKEH MRGTNKENEH RDARDFEPHS KKEQFLNKKQ KLHIRGDDPA EISNQSKLSG AVPSSSTYDE KGAMKSYSQD LAIVDRVKEK
0301: LNASEYQEFL RCLNLFSKEI ISRPELQSLV GNLIGVYPDL MDSFIEFLVQ CEKNEGLLSG ILTKSKSTYL LQGEGKYPQP SLDNDRDQEH KRDDGLRDRD
0401: HEKERLEKAA ANLKWAKPIS ELDLSNCEQC TPSYRLLPKN YPISIASQKT EIGKLVLNDH WVSVTSGSED YSFSHMRKNQ YEESLFKCED DRFELDMLLE
0501: SVNSTTKHVE ELLTKINSNE LKTNSPIRVE DHLTALNLRC IERLYGDHGL DVMDVLKKNV SLALPVILTR LKQKQEEWAR CRSDFDKVWA EIYAKNYYKS
0601: LDHRSFYFKQ QDSKKLSMKA LLAEIKEITE KKREDDSLLA FAAGNRLSIS PDLEFDYPDH DLHEDLYQLI KYSCAEMCST EQLDKVMKIW TTFVEQIFGV
0701: PSRPQGAEDQ EDVVKSMNQN VKSGSSSAGE SEGSPHNYAS VADSRRSKSS RKANEHSQLG QTSNSERDGA AGRTSDALCE TAQHEKMLKN VVTSDEKPES
0801: KQAVSIERAH DSTALAVDGL LDQSNGGSSI VHMTGHCNNN LKPVTCGTEL ELKMNDGNGP KLEVGNKKLL TNGIAVEITS DQEMAGTSKV EREEGELSPN
0901: GDFEEDNFAV YAKTDFETFS KANDSTGNNI SGDRSREGEP SCLETRAEND AEGDENAARS SEDSRNEYEN GDVSGTESGG GEDPEDDLDN NNKGESEGEA
1001: ECMADAHDAE ENGSALPVSA RFLLHVKPLV KYVPSAIALH DKDKDSLKNS QVFYGNDSFY VLFRLHRILY ERILSAKVNS SSPEGKWRTS NTKNPTDSYA
1101: RFMTALYNLL DGTSDNAKFE DDCRAIIGTQ SYILFTLDKL IHKFIKHLQV VVADEMDNKL LQLYFYEKSR RPETIFDAVY YDNTRVLLPD ENIYRIECRL
1201: STPAKLSIQL MCNGLDKPDV TSVSIDPTFA AYLHNDFLSI QPNAREDRRI YLNRNKRKVC REDEQLYSTD EVKIKNGLEC KIACGSSKVS YVLETEDLLV
1301: RVKKRRKTLC HNQDSWVRQM RLQYYKNNFL
Arabidopsis Description
SNL3SIN3-like 3 [Source:TAIR;Acc:AT1G24190]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.