Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
Predictors | GFP | MS/MS | Papers | ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
TraesCS1B01G464000.1 | Wheat | nucleus | 91.98 | 55.43 |
TraesCS1A01G429200.1 | Wheat | nucleus | 93.59 | 55.14 |
HORVU1Hr1G093530.1 | Barley | nucleus | 80.56 | 50.63 |
HORVU1Hr1G093540.1 | Barley | nucleus | 80.56 | 50.63 |
HORVU1Hr1G093550.1 | Barley | nucleus | 74.35 | 49.8 |
TraesCS1D01G438600.1 | Wheat | nucleus | 66.13 | 42.31 |
Zm00001d009729_P001 | Maize | nucleus | 13.23 | 26.94 |
Os05t0588700-01 | Rice | nucleus | 45.29 | 26.34 |
KXG22653 | Sorghum | nucleus | 41.08 | 24.49 |
GSMUA_AchrUn_... | Banana | cytosol | 15.23 | 18.63 |
TraesCS3D01G007000.1 | Wheat | cytosol | 6.41 | 17.02 |
CDY71516 | Canola | cytosol, mitochondrion, nucleus | 7.82 | 15.0 |
TraesCS1D01G004900.4 | Wheat | nucleus | 30.86 | 11.45 |
TraesCS3D01G007600.2 | Wheat | nucleus, plastid | 31.26 | 11.31 |
GSMUA_Achr7P17160_001 | Banana | nucleus | 23.45 | 10.68 |
GSMUA_AchrUn_... | Banana | nucleus | 5.61 | 8.38 |
Protein Annotations
EnsemblPlants:TraesCS1D01G438700.1 | EnsemblPlantsGene:TraesCS1D01G438700 | Gene3D:1.20.1160.11 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 |
GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:HDAC_interact_dom | InterPro:IPR003822 | InterPro:PAH |
InterPro:PAH_sf | PANTHER:PTHR12346 | PANTHER:PTHR12346:SF10 | PFAM:PF02671 | PFAM:PF08295 | PFscan:PS51477 |
SEG:seg | SMART:SM00761 | SUPFAM:SSF47762 | MapMan:35.1 | : | : |
Description
No Description!
Coordinates
chr1D:-:485475734..485479862
Molecular Weight (calculated)
57474.4 Da
IEP (calculated)
6.082
GRAVY (calculated)
-0.514
Length
499 amino acids
Sequence
(BLAST)
(BLAST)
001: MMETVQCLLF ARDNLPSDVY REFVKAMTEV WKNCADPDGE IRNICPENCI ETALKLFQGW ATVKQSFLNF TEGRSPVEGN GIVDADVEAV VVNPLLQKPI
101: DFLSGLKACP NMSDDHYAAF LKIMQDYFRD RTMTPRKVYK KVRRCMRDCP ELLEEFVDNF LPADLKAFVK VKANDNRRSD AGSVTSYMYS SLIGYGELPH
201: AEEDEEDKVK PLPDWNSSKA QELPPEVDPK KLERACTPSY YLLPDNLTLH SSYWTNLGRS ILNDTFVCSV SGMESSKHKT INGYETNIFY CEEDMFESDM
301: LLHRFRATAD LIANLQTRAG SRLKISEHLT PLHRRCIEKL YDDDPELDDL LESPNTSSVL AVLLSRLKQK VEDLSEARSY LHKAHSQVIA KNYYRSLDHR
401: GLSFKQLDAK RMSQKGFTRF KDKIIKLHAH CIDNSSFEDF CLQFLGPKSV ELFTLDIVIN RVIKQFPNNP SNILPKYDQE EQEKALADTE KLPRHFERR
101: DFLSGLKACP NMSDDHYAAF LKIMQDYFRD RTMTPRKVYK KVRRCMRDCP ELLEEFVDNF LPADLKAFVK VKANDNRRSD AGSVTSYMYS SLIGYGELPH
201: AEEDEEDKVK PLPDWNSSKA QELPPEVDPK KLERACTPSY YLLPDNLTLH SSYWTNLGRS ILNDTFVCSV SGMESSKHKT INGYETNIFY CEEDMFESDM
301: LLHRFRATAD LIANLQTRAG SRLKISEHLT PLHRRCIEKL YDDDPELDDL LESPNTSSVL AVLLSRLKQK VEDLSEARSY LHKAHSQVIA KNYYRSLDHR
401: GLSFKQLDAK RMSQKGFTRF KDKIIKLHAH CIDNSSFEDF CLQFLGPKSV ELFTLDIVIN RVIKQFPNNP SNILPKYDQE EQEKALADTE KLPRHFERR
0001: MKRVREEVYV EPQMRGPTVS SRGETNGRPS TISGGGTTGG LTTVDALTYL KAVKDMFQDN KEKYETFLGV MKDFKAQRVD TNGVIARVKD LFKGYDDLLL
0101: GFNTFLPKGY KITLQPEDEK PKKPVDFQVA IEFVNRIKAR FGGDDRAYKK FLDILNMYRK ETKSINEVYQ EVTLLFQDHE DLLGEFVHFL PDFRGSVSVN
0201: DPLFQRNTIP RDRNSTFPGM HPKHFEKKIK RSRHDEYTEL SDQREDGDEN LVAYSAESLA NQGQWPGYPK VEDTEGIQIY ESNGGHERDP DIGSQKNLLS
0301: TNHMAKAINE LDLTDCAQCT PSYRRLPDDY PIQIPSYRNS LGEKVLNDHW VSVTSGSEDY SFKHMRKNQY EESLFRCEDD RFELDMLLES VSAAIKRVES
0401: LLEKINNNTI SIETPICIRE HLSELNLRCI ERLYGDYGLD VMDFLKKNSH IALPVILTRL KQKQEEWARC RADFRKVWAE VYAKNHHKSL DHRSFYFKQQ
0501: DSKNLSTKGL VAEIKDISER KHKEDLLRAI AVGTKPSFTP DVEFIYTDTK VHTDLYKLIK YYCEEICATE QSDKVMKLWV TFLEPMFGVP SRSETIETMK
0601: DVAKIEDNQE HHDASEAVKE NTCDGSMASN LKPLTPPKMP NKENPMIQGS SFAQDLPVNT GESIQQDKLH DVAAITNEDS QPSKLVSTRN DLIMEGVENR
0701: SRVSDVSMGG HKVEREEGEL SPTESCEQEN FEVYKENGLE PVQKLPDNEI SNTDREPKEG ACGTEAVTRS NALPEDDDNK ITQKLSEGDE NASKFIVSAS
0801: KFGGQVSSDE EHKGAESENE AGGMVNSNEG EDGSFFTFSE RYLQPVKPLA KHVPGTLQAS ECDTRNDSRV FYGNDSLYVL FRLHQMLYER IQSAKIHSER
0901: KWKAPDSTST DSYTRFMEAL YNLLDGSSDN TKFEDECRAI IGAQSYVLFT LDKLVQKFVK HLHAVAADET DTKLLQLYAY ENYRKPGRFF DIVYHENARA
1001: LLHDQNIYRI EYSSAQTRLG IQLMNSWNDQ PEVTAVTVEP GFANYLQNDF LSFVSDEEKP GLFLKRNKAK LSGPGEESLG MSRALEGLNI INEVECKIAC
1101: SSFKVKYEPH TADLLYRRKQ KKATLNPTGP ENVKTSDSSV KFFAENEICK NE
0101: GFNTFLPKGY KITLQPEDEK PKKPVDFQVA IEFVNRIKAR FGGDDRAYKK FLDILNMYRK ETKSINEVYQ EVTLLFQDHE DLLGEFVHFL PDFRGSVSVN
0201: DPLFQRNTIP RDRNSTFPGM HPKHFEKKIK RSRHDEYTEL SDQREDGDEN LVAYSAESLA NQGQWPGYPK VEDTEGIQIY ESNGGHERDP DIGSQKNLLS
0301: TNHMAKAINE LDLTDCAQCT PSYRRLPDDY PIQIPSYRNS LGEKVLNDHW VSVTSGSEDY SFKHMRKNQY EESLFRCEDD RFELDMLLES VSAAIKRVES
0401: LLEKINNNTI SIETPICIRE HLSELNLRCI ERLYGDYGLD VMDFLKKNSH IALPVILTRL KQKQEEWARC RADFRKVWAE VYAKNHHKSL DHRSFYFKQQ
0501: DSKNLSTKGL VAEIKDISER KHKEDLLRAI AVGTKPSFTP DVEFIYTDTK VHTDLYKLIK YYCEEICATE QSDKVMKLWV TFLEPMFGVP SRSETIETMK
0601: DVAKIEDNQE HHDASEAVKE NTCDGSMASN LKPLTPPKMP NKENPMIQGS SFAQDLPVNT GESIQQDKLH DVAAITNEDS QPSKLVSTRN DLIMEGVENR
0701: SRVSDVSMGG HKVEREEGEL SPTESCEQEN FEVYKENGLE PVQKLPDNEI SNTDREPKEG ACGTEAVTRS NALPEDDDNK ITQKLSEGDE NASKFIVSAS
0801: KFGGQVSSDE EHKGAESENE AGGMVNSNEG EDGSFFTFSE RYLQPVKPLA KHVPGTLQAS ECDTRNDSRV FYGNDSLYVL FRLHQMLYER IQSAKIHSER
0901: KWKAPDSTST DSYTRFMEAL YNLLDGSSDN TKFEDECRAI IGAQSYVLFT LDKLVQKFVK HLHAVAADET DTKLLQLYAY ENYRKPGRFF DIVYHENARA
1001: LLHDQNIYRI EYSSAQTRLG IQLMNSWNDQ PEVTAVTVEP GFANYLQNDF LSFVSDEEKP GLFLKRNKAK LSGPGEESLG MSRALEGLNI INEVECKIAC
1101: SSFKVKYEPH TADLLYRRKQ KKATLNPTGP ENVKTSDSSV KFFAENEICK NE
Arabidopsis Description
SNL5SIN3-like 5 [Source:UniProtKB/TrEMBL;Acc:F4IEM8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.