Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 2
- mitochondrion 2
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES00449 | Sorghum | nucleus | 94.66 | 94.8 |
| Zm00001d040123_P007 | Maize | nucleus | 92.45 | 92.96 |
| Os01t0109700-01 | Rice | nucleus | 75.81 | 82.5 |
| TraesCSU01G039900.1 | Wheat | nucleus | 76.78 | 77.54 |
| TraesCS3B01G005900.1 | Wheat | nucleus | 76.02 | 76.5 |
| TraesCS3D01G007600.2 | Wheat | nucleus, plastid | 72.77 | 76.14 |
| HORVU3Hr1G000540.2 | Barley | plastid | 76.72 | 71.84 |
| GSMUA_Achr1P20690_001 | Banana | nucleus | 64.03 | 68.9 |
| GSMUA_Achr9P00800_001 | Banana | nucleus | 64.86 | 67.05 |
| GSMUA_Achr11P... | Banana | nucleus | 61.4 | 64.3 |
| GSMUA_Achr2P09580_001 | Banana | nucleus | 59.67 | 63.22 |
| VIT_01s0026g01010.t01 | Wine grape | nucleus | 62.79 | 62.44 |
| Zm00001d035776_P004 | Maize | nucleus | 53.57 | 61.3 |
| KRH69432 | Soybean | nucleus | 58.7 | 59.23 |
| KRH74716 | Soybean | nucleus | 53.64 | 58.86 |
| CDY23529 | Canola | cytosol | 6.31 | 57.59 |
| CDY48380 | Canola | cytosol | 6.24 | 56.96 |
| AT1G24200.1 | Thale cress | cytosol | 7.55 | 55.61 |
| CDY48381 | Canola | cytosol | 5.75 | 53.55 |
| CDY23528 | Canola | cytosol | 5.75 | 53.55 |
| Bra003968.1-P | Field mustard | cytosol | 5.75 | 53.55 |
| CDY38781 | Canola | nucleus | 47.82 | 53.53 |
| Bra016241.1-P | Field mustard | nucleus | 47.75 | 53.45 |
| CDY11625 | Canola | nucleus | 47.68 | 53.33 |
| CDY23527 | Canola | nucleus | 47.68 | 53.17 |
| CDX68358 | Canola | nucleus | 47.05 | 52.88 |
| AT1G70060.2 | Thale cress | nucleus | 48.51 | 52.79 |
| AT1G24190.3 | Thale cress | nucleus | 48.37 | 52.17 |
| Bra003967.1-P | Field mustard | nucleus | 46.99 | 51.56 |
| AT1G70030.1 | Thale cress | cytosol | 5.68 | 51.25 |
| Zm00001d041450_P002 | Maize | nucleus | 19.2 | 35.24 |
| Zm00001d008431_P001 | Maize | nucleus | 2.84 | 31.54 |
| Zm00001d009729_P001 | Maize | nucleus | 4.78 | 28.16 |
| Zm00001d041453_P001 | Maize | nucleus | 22.45 | 28.05 |
Protein Annotations
| Gene3D:1.20.1160.11 | EntrezGene:103634740 | MapMan:12.3.2.4.2 | UniProt:A0A1D6FCT5 | ProteinID:AQK89829.1 | ProteinID:AQK89851.1 |
| ncoils:Coil | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:HDAC_interact_dom |
| InterPro:IPR003822 | InterPro:PAH | InterPro:PAH_sf | PFAM:PF02671 | PFAM:PF08295 | PFAM:PF16879 |
| PFscan:PS51477 | PANTHER:PTHR12346 | PANTHER:PTHR12346:SF21 | SMART:SM00761 | SUPFAM:SSF47762 | InterPro:Sin3_C |
| UniParc:UPI0004DEC095 | EnsemblPlantsGene:Zm00001d008429 | EnsemblPlants:Zm00001d008429_P019 | EnsemblPlants:Zm00001d008429_T019 | SEG:seg | : |
Description
Paired amphipathic helix protein Sin3-like 3
Coordinates
chr8:-:8455035..8475257
Molecular Weight (calculated)
163617.0 Da
IEP (calculated)
5.908
GRAVY (calculated)
-0.855
Length
1443 amino acids
Sequence
(BLAST)
(BLAST)
0001: MKRGARDDAL MGSQLKRPNV GRSDPSAQPQ HMPVPGLASA AAPPPQAGAA PPAQPQQTSG AALTNQKLTT NDALVYLKAV KDKFQDKREK YEEFLEVMRD
0101: FKSERIDTNG VIGRVKTLFN GYPELILGFN AFLPKGYAIK LQEEKKPVDF VEAINFVNKI KNRFQHDERV YKAFLDILNM YRKDNKSIQD VYHEVAGLFK
0201: DHKDLLEEFQ HFLPDTSVAP QAVASSRGGL VKREDRSSLP PANRTLHNEK RERACLSHAD RDFSVDRPDV DHDRQRRRLD KEKERKVERD RRDYEREDKD
0301: GEHDSRDLEI GQRKRKPFPR KMEDNAGAET HQGGPSENHG IHSVSSSSYD DKDALKSVYT HEFHFCEKVK EKLEHEAYQE FLKCLHIYSQ EIITRSELKN
0401: LVNDILQHYP DLMEGFNEFL EHCENIVWPL VADGFLAGVF NKRPTTRIVK TEDKEKDRDR DREDRDRDRE KEREKERERL DKGSTFNSKD GSCHKPPMFS
0501: GKEKYNLSKP ISELDLSNCQ RCTPSYRLLP KNYPMPPASN RTDLGASVLN DHWVSVTSGS EDYSFKHMRK NQYEESLFRC EDDRFELDML LESVNAATKR
0601: VEELIEKMQD NSVKPESPIR MDEHLTPLNL RCIERLYGDH GLDVMDVLRK NASVALPVIL TRLKQKQEEW SRCRSDFNKV WAEIYAKNYH KSLDHRSFYF
0701: KQQDTKNLST KSLLTEIKEI NEKKRKEDDV LLAIAAGNRR PIVPNMSFEY VDSEIHEDLH KIIKYSCGEI CNSSDQLDKV MRIWTTFVEP ILGVQRKHGS
0801: EDPDLVKPKS RTTKSGIANV GESNTGAGIV SKHNNDDESE QGLPSRARIA NGVAANAQNG FHDADRIARR GEESLNVTLN GRVHGAASAD ETPSLSTQNI
0901: ASTERSAENA AVVRTEQHKA NLELTPGVNG SRSSHGAVEV AGEGKAVNET LPSAVGGETG RLGPSFNGIS EGIKGRLNND GSAPHISKVE REEGELSPNG
1001: DFDEDHFVPF EDGTSKGKEG STSRSFQGRH GEVVPSAEAA GENDADADDE GEESAQRSTE DSENASEAGE DASGSESGDG EECFREDHDE EEEDMDHDDQ
1101: DTKAESEGEA EGTTETHDVE GGISLPLSER SLYSVKPLAK HVPTALHDRE KFSRIFYGND SFYVLFRLHQ ILYERLLSAK TNSFTAEKKW RNSKDTNPPD
1201: LYAKFMSALY NLLDGSSDNT KFEDDCRAII GTQSYVLFTL DKLIYKVVKQ LQAIATDEMD NKLLQLYLYE KSRSPGRFFD LVYHENARVL LHDESIYRFE
1301: CCSSPTRLSI QLMEYGHEKP EVTAVSIDPN FSSYLFGEYL CSTSDKKLSE GVYLARNKRK YSDNDEPSDF LKAMDGIKVV NGLECKISCK TSKVSYVLDT
1401: EDFLSRLRKR RKILRGGSVS DSSQFSKIYA AKVQRFNRFL SKA
0101: FKSERIDTNG VIGRVKTLFN GYPELILGFN AFLPKGYAIK LQEEKKPVDF VEAINFVNKI KNRFQHDERV YKAFLDILNM YRKDNKSIQD VYHEVAGLFK
0201: DHKDLLEEFQ HFLPDTSVAP QAVASSRGGL VKREDRSSLP PANRTLHNEK RERACLSHAD RDFSVDRPDV DHDRQRRRLD KEKERKVERD RRDYEREDKD
0301: GEHDSRDLEI GQRKRKPFPR KMEDNAGAET HQGGPSENHG IHSVSSSSYD DKDALKSVYT HEFHFCEKVK EKLEHEAYQE FLKCLHIYSQ EIITRSELKN
0401: LVNDILQHYP DLMEGFNEFL EHCENIVWPL VADGFLAGVF NKRPTTRIVK TEDKEKDRDR DREDRDRDRE KEREKERERL DKGSTFNSKD GSCHKPPMFS
0501: GKEKYNLSKP ISELDLSNCQ RCTPSYRLLP KNYPMPPASN RTDLGASVLN DHWVSVTSGS EDYSFKHMRK NQYEESLFRC EDDRFELDML LESVNAATKR
0601: VEELIEKMQD NSVKPESPIR MDEHLTPLNL RCIERLYGDH GLDVMDVLRK NASVALPVIL TRLKQKQEEW SRCRSDFNKV WAEIYAKNYH KSLDHRSFYF
0701: KQQDTKNLST KSLLTEIKEI NEKKRKEDDV LLAIAAGNRR PIVPNMSFEY VDSEIHEDLH KIIKYSCGEI CNSSDQLDKV MRIWTTFVEP ILGVQRKHGS
0801: EDPDLVKPKS RTTKSGIANV GESNTGAGIV SKHNNDDESE QGLPSRARIA NGVAANAQNG FHDADRIARR GEESLNVTLN GRVHGAASAD ETPSLSTQNI
0901: ASTERSAENA AVVRTEQHKA NLELTPGVNG SRSSHGAVEV AGEGKAVNET LPSAVGGETG RLGPSFNGIS EGIKGRLNND GSAPHISKVE REEGELSPNG
1001: DFDEDHFVPF EDGTSKGKEG STSRSFQGRH GEVVPSAEAA GENDADADDE GEESAQRSTE DSENASEAGE DASGSESGDG EECFREDHDE EEEDMDHDDQ
1101: DTKAESEGEA EGTTETHDVE GGISLPLSER SLYSVKPLAK HVPTALHDRE KFSRIFYGND SFYVLFRLHQ ILYERLLSAK TNSFTAEKKW RNSKDTNPPD
1201: LYAKFMSALY NLLDGSSDNT KFEDDCRAII GTQSYVLFTL DKLIYKVVKQ LQAIATDEMD NKLLQLYLYE KSRSPGRFFD LVYHENARVL LHDESIYRFE
1301: CCSSPTRLSI QLMEYGHEKP EVTAVSIDPN FSSYLFGEYL CSTSDKKLSE GVYLARNKRK YSDNDEPSDF LKAMDGIKVV NGLECKISCK TSKVSYVLDT
1401: EDFLSRLRKR RKILRGGSVS DSSQFSKIYA AKVQRFNRFL SKA
0001: MVGGGSAQKL TTNDALAYLK AVKDKFQDQR GKYDEFLEVM KNFKSQRVDT AGVITRVKEL FKGHQELILG FNTFLPKGFE ITLQPEDGQP PLKKRVEFEE
0101: AISFVNKIKT RFQGDDRVYK SFLDILNMYR RDSKSITEVY QEVAILFRDH SDLLVEFTHF LPDTSATASI PSVKTSVRER GVSLADKKDR IITPHPDHDY
0201: GTEHIDQDRE RPIKKENKEH MRGTNKENEH RDARDFEPHS KKEQFLNKKQ KLHIRGDDPA EISNQSKLSG AVPSSSTYDE KGAMKSYSQD LAIVDRVKEK
0301: LNASEYQEFL RCLNLFSKEI ISRPELQSLV GNLIGVYPDL MDSFIEFLVQ CEKNEGLLSG ILTKSKSTYL LQGEGKYPQP SLDNDRDQEH KRDDGLRDRD
0401: HEKERLEKAA ANLKWAKPIS ELDLSNCEQC TPSYRLLPKN YPISIASQKT EIGKLVLNDH WVSVTSGSED YSFSHMRKNQ YEESLFKCED DRFELDMLLE
0501: SVNSTTKHVE ELLTKINSNE LKTNSPIRVE DHLTALNLRC IERLYGDHGL DVMDVLKKNV SLALPVILTR LKQKQEEWAR CRSDFDKVWA EIYAKNYYKS
0601: LDHRSFYFKQ QDSKKLSMKA LLAEIKEITE KKREDDSLLA FAAGNRLSIS PDLEFDYPDH DLHEDLYQLI KYSCAEMCST EQLDKVMKIW TTFVEQIFGV
0701: PSRPQGAEDQ EDVVKSMNQN VKSGSSSAGE SEGSPHNYAS VADSRRSKSS RKANEHSQLG QTSNSERDGA AGRTSDALCE TAQHEKMLKN VVTSDEKPES
0801: KQAVSIERAH DSTALAVDGL LDQSNGGSSI VHMTGHCNNN LKPVTCGTEL ELKMNDGNGP KLEVGNKKLL TNGIAVEITS DQEMAGTSKV EREEGELSPN
0901: GDFEEDNFAV YAKTDFETFS KANDSTGNNI SGDRSREGEP SCLETRAEND AEGDENAARS SEDSRNEYEN GDVSGTESGG GEDPEDDLDN NNKGESEGEA
1001: ECMADAHDAE ENGSALPVSA RFLLHVKPLV KYVPSAIALH DKDKDSLKNS QVFYGNDSFY VLFRLHRILY ERILSAKVNS SSPEGKWRTS NTKNPTDSYA
1101: RFMTALYNLL DGTSDNAKFE DDCRAIIGTQ SYILFTLDKL IHKFIKHLQV VVADEMDNKL LQLYFYEKSR RPETIFDAVY YDNTRVLLPD ENIYRIECRL
1201: STPAKLSIQL MCNGLDKPDV TSVSIDPTFA AYLHNDFLSI QPNAREDRRI YLNRNKRKVC REDEQLYSTD EVKIKNGLEC KIACGSSKVS YVLETEDLLV
1301: RVKKRRKTLC HNQDSWVRQM RLQYYKNNFL
0101: AISFVNKIKT RFQGDDRVYK SFLDILNMYR RDSKSITEVY QEVAILFRDH SDLLVEFTHF LPDTSATASI PSVKTSVRER GVSLADKKDR IITPHPDHDY
0201: GTEHIDQDRE RPIKKENKEH MRGTNKENEH RDARDFEPHS KKEQFLNKKQ KLHIRGDDPA EISNQSKLSG AVPSSSTYDE KGAMKSYSQD LAIVDRVKEK
0301: LNASEYQEFL RCLNLFSKEI ISRPELQSLV GNLIGVYPDL MDSFIEFLVQ CEKNEGLLSG ILTKSKSTYL LQGEGKYPQP SLDNDRDQEH KRDDGLRDRD
0401: HEKERLEKAA ANLKWAKPIS ELDLSNCEQC TPSYRLLPKN YPISIASQKT EIGKLVLNDH WVSVTSGSED YSFSHMRKNQ YEESLFKCED DRFELDMLLE
0501: SVNSTTKHVE ELLTKINSNE LKTNSPIRVE DHLTALNLRC IERLYGDHGL DVMDVLKKNV SLALPVILTR LKQKQEEWAR CRSDFDKVWA EIYAKNYYKS
0601: LDHRSFYFKQ QDSKKLSMKA LLAEIKEITE KKREDDSLLA FAAGNRLSIS PDLEFDYPDH DLHEDLYQLI KYSCAEMCST EQLDKVMKIW TTFVEQIFGV
0701: PSRPQGAEDQ EDVVKSMNQN VKSGSSSAGE SEGSPHNYAS VADSRRSKSS RKANEHSQLG QTSNSERDGA AGRTSDALCE TAQHEKMLKN VVTSDEKPES
0801: KQAVSIERAH DSTALAVDGL LDQSNGGSSI VHMTGHCNNN LKPVTCGTEL ELKMNDGNGP KLEVGNKKLL TNGIAVEITS DQEMAGTSKV EREEGELSPN
0901: GDFEEDNFAV YAKTDFETFS KANDSTGNNI SGDRSREGEP SCLETRAEND AEGDENAARS SEDSRNEYEN GDVSGTESGG GEDPEDDLDN NNKGESEGEA
1001: ECMADAHDAE ENGSALPVSA RFLLHVKPLV KYVPSAIALH DKDKDSLKNS QVFYGNDSFY VLFRLHRILY ERILSAKVNS SSPEGKWRTS NTKNPTDSYA
1101: RFMTALYNLL DGTSDNAKFE DDCRAIIGTQ SYILFTLDKL IHKFIKHLQV VVADEMDNKL LQLYFYEKSR RPETIFDAVY YDNTRVLLPD ENIYRIECRL
1201: STPAKLSIQL MCNGLDKPDV TSVSIDPTFA AYLHNDFLSI QPNAREDRRI YLNRNKRKVC REDEQLYSTD EVKIKNGLEC KIACGSSKVS YVLETEDLLV
1301: RVKKRRKTLC HNQDSWVRQM RLQYYKNNFL
Arabidopsis Description
SNL3SIN3-like 3 [Source:TAIR;Acc:AT1G24190]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.