Factsheet for Solyc10g047980.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g047990.1.1	Tomato	cytosol	52.97	77.85
Solyc10g047970.1.1	Tomato	cytosol	77.17	74.78
Solyc10g048000.1.1	Tomato	endoplasmic reticulum	72.6	53.72
PGSC0003DMT400090159	Potato	cytosol, extracellular, mitochondrion, nucleus	41.55	32.97
PGSC0003DMT400097436	Potato	cytosol	71.23	31.45
Solyc02g087380.1.1	Tomato	nucleus, plastid	18.72	29.93
Solyc07g041320.1.1	Tomato	cytosol	22.37	23.22
Solyc04g025000.1.1	Tomato	cytosol, mitochondrion, nucleus	19.18	21.76
Solyc02g087370.1.1	Tomato	cytosol	18.72	21.35
CDY55066	Canola	cytosol	28.31	15.58
Solyc04g024990.1.1	Tomato	cytosol	18.72	15.02
Solyc11g045320.1.1	Tomato	cytosol	9.59	14.48
Solyc02g087390.1.1	Tomato	cytosol	29.22	12.57
Solyc02g067570.2.1	Tomato	nucleus	40.64	6.6
Solyc02g087360.2.1	Tomato	nucleus	38.36	6.25
Solyc05g006540.2.1	Tomato	nucleus	34.7	5.59
CDY55065	Canola	nucleus	5.94	1.86

Protein Annotations

Gene3D:1.20.1160.11	MapMan:35.1	GO:GO:0000118	GO:GO:0000122	GO:GO:0000785	GO:GO:0001106
GO:GO:0003674	GO:GO:0003824	GO:GO:0004407	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005654	GO:GO:0006139	GO:GO:0006355	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0016575	GO:GO:0016787
GO:GO:0019538	InterPro:IPR003822	UniProt:K4D057	InterPro:PAH	InterPro:PAH_sf	PFAM:PF02671
PFscan:PS51477	PANTHER:PTHR12346	PANTHER:PTHR12346:SF8	SUPFAM:SSF47762	EnsemblPlantsGene:Solyc10g047980.1	EnsemblPlants:Solyc10g047980.1.1
UniParc:UPI0002769EE6	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr10:+:43378693..43380800

Molecular Weight (calculated)

25035.9 Da

IEP (calculated)

4.469

GRAVY (calculated)

-0.204

Length

219 amino acids

Sequence
(BLAST)

001: MKILKSDVVD TPPFKRPICS SNEESITYVS SVDPDATLSY IRKIKNTFVD QEGKYEMLVD VIKDLKAGII RELLKGYHSL ILGFNAYLPN GYEIMLSYEE
101: MTSLKNTTNY EEERNFVENI KVAVLFNDHH DLLDEFSEFL KYSDNPNPLS SLLLVLDSLF PCGYDIIFND EVKPLKKSIH FKQVSVLLSE RPDLVDEFSG
201: FLPDLVTTNM LSNLDGTKN

Best Arabidopsis Sequence Match ( AT5G15020.2 )
(BLAST)

0001: MKRIRDDIYA TGSQFKRPLG SSRGESYEQS PITGGGSIGE GGINTQKLTT DDALTYLKEV KEMFQDQRDK YDMFLEVMKD FKAQKTDTSG VISRVKELFK
0101: GHNNLIFGFN TFLPKGFEIT LDDVEAPSKK TVEFEEAISF VNKIKTRFQH NELVYKSFLE ILNMYRKDNK DITEVYNEVS TLFEDHSDLL EEFTRFLPDS
0201: LAPHTEAQLL RSQAQRYDDR GSGPPLVRRM FMEKDRRRER TVASRGDRDH SVDRSDLNDD KSMVKMHRDQ RKRVDKDNRE RRSRDLEDGE AEQDNLQHFS
0301: EKRKSSRRME GFEAYSGPAS HSEKNNLKSM YNQAFLFCEK VKERLCSQDD YQAFLKCLNM FSNGIIQRKD LQNLVSDVLG KFPDLMDEFN QFFERCESID
0401: GFQHLAGVMS KKSLGSEENL SRSVKGEEKD REHKRDVEAA KEKERSKDKY MGKSIQELDL SDCERCTPSY RLLPPDYPIP SVRHRQKSGA AVLNDHWVSV
0501: TSGSEDYSFK HMRRNQYEES LFRCEDDRFE LDMLLESVGS AAKSAEELLN IIIDKKISFE GSFRIEDHFT ALNLRCIERL YGDHGLDVTD LIRKNPAAAL
0601: PVILTRLKQK QDEWTKCREG FNVVWADVYA KNHYKSLDHR SFYFKQQDSK NLSAKALVSE VKDLKEKSQK EDDVVLSISA GYRQPIIPHL EYDYLDRAIH
0701: EDLFKLVQFS CEEICSTKEQ TGKVLKLWAN FLELMLDVAP RAKGSDSVED VVETQHQRAF TSGEANESSD AISLVSRQLK FATNGDVHAS SGVSKHGETG
0801: LLNRDSSGKE NLKDGDLANK DVATCAEKPQ KDQEIGNGAA KRSGDVDERV ATSSSSFPSG VENNNGKVGS RDSSGSRGIL SKPSEAIDKV DSIQHTQGVD
0901: IGRIIVLGNG LQSDTSKANS NYDESGGPSK IEKEEGELSP VGDSEDNFVV YEDRELKATA KTEHSVEAEG ENDEDADDED GDDASEAGED ASGTESIGDE
1001: CSQDDNGVEE EGEHDEIDGK AESEGEAEGM ESHLIEDKGL FPSSERVLLS VKPLSKHIAA AALVDEKKKD SRVFYGNDDF YVLFRLHRIL YERILSAKTY
1101: CSGSEMKLRN TKDTCSPDPY ARFMNALFSL LNGSAENSKF EDECRAIIGN QSYVLFTLEK LIYKLVKQLQ AVVADDMDNK LLQLYEYENS RRPGRVFDSV
1201: YYENARILLH EENIYRLECS SSPSRLSIQL MDNIIEKPDA YAVSMEPTFT SYLQNEFLSN SSGKKELQDI VLQRNMRGYN GLDDLAVACK AMEGVQVING
1301: LECKMSCSSY KISYVLDTED FFHRKKKQKK SNNLSLAKLS QNRIARFHKF LSASR

Arabidopsis Description

SNL2Paired amphipathic helix protein Sin3-like 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LFQ3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.