CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH37982	nucleus
KRH48306
KRH65197
KRH65426	nucleus
KRH76125	nucleus

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G38130.1	KRH48306	AT2G45640.1	16429262
AT4G38130.1	KRH65197	AT2G45640.1	16429262
AT4G38130.1	KRH37982	AT4G32010.1	23362207
AT4G38130.1	KRH65426	AT4G32010.1	23362207
AT4G38130.1	KRH76125	AT4G32010.1	23362207
AT4G38130.1	KRH37982	AT4G32010.1	23362207
AT4G38130.1	KRH65426	AT4G32010.1	23362207
AT4G38130.1	KRH76125	AT4G32010.1	23362207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH60609	Soybean	nucleus	97.99	97.99
VIT_03s0038g04240.t01	Wine grape	nucleus	85.11	84.26
VIT_14s0006g01820.t01	Wine grape	nucleus	84.51	83.67
Zm00001d016381_P001	Maize	nucleus	67.0	81.62
Solyc09g091440.2.1	Tomato	nucleus	80.28	80.12
AT4G38130.1	Thale cress	nucleus	80.08	79.44
Bra040131.1-P	Field mustard	nucleus	79.88	79.08
KRH27562	Soybean	nucleus	79.07	79.07
CDY21119	Canola	nucleus	79.68	78.88
CDY30008	Canola	nucleus	79.48	78.69
KRH77972	Soybean	nucleus	78.47	78.47
GSMUA_Achr5P06320_001	Banana	nucleus	69.82	74.78
PGSC0003DMT400076252	Potato	nucleus	79.88	74.07
Zm00001d053595_P004	Maize	nucleus	76.66	73.69
EES04741	Sorghum	nucleus	76.66	73.69
GSMUA_AchrUn_...	Banana	cytosol	58.35	73.6
HORVU6Hr1G038710.1	Barley	cytosol	76.66	73.55
TraesCS6A01G184100.2	Wheat	nucleus	76.66	73.41
TraesCS6B01G212600.3	Wheat	nucleus	76.66	73.27
Zm00001d014076_P001	Maize	cytosol, mitochondrion, nucleus	14.29	73.2
Os06t0583400-01	Rice	nucleus	76.26	73.17
GSMUA_Achr2P19590_001	Banana	nucleus	66.8	72.97
KXG20269	Sorghum	nucleus	75.86	72.78
TraesCS7D01G356800.1	Wheat	nucleus	75.86	72.64
HORVU7Hr1G085870.2	Barley	nucleus	75.25	72.06
TraesCS7B01G261800.1	Wheat	nucleus	75.25	72.06
KRH16462	Soybean	nucleus	11.27	71.79
TraesCS7A01G365600.3	Wheat	nucleus	75.25	71.51
Os02t0215200-02	Rice	cytoskeleton, cytosol, nucleus	70.62	68.96
Zm00001d046388_P001	Maize	nucleus	73.44	68.74
Os02t0214900-01	Rice	cytoskeleton, cytosol, nucleus	69.62	67.84
TraesCS6D01G171000.1	Wheat	golgi	76.66	66.38
GSMUA_Achr8P04190_001	Banana	cytosol, nucleus, plasma membrane	57.34	66.13
KRH54336	Soybean	cytosol, nucleus, plastid	20.93	65.0
GSMUA_Achr1P14440_001	Banana	cytosol	53.72	64.18
KRH03236	Soybean	nucleus	59.76	62.92
KRH57122	Soybean	nucleus	60.16	62.82
KRH63609	Soybean	cytosol	57.55	61.51
KRH25183	Soybean	cytosol	49.7	57.58
KRH30495	Soybean	cytosol	49.7	57.58
KRH54335	Soybean	cytosol, nucleus, plastid	25.75	54.7
KRH63610	Soybean	cytosol	20.72	52.28
Zm00001d039202_P001	Maize	nucleus	17.3	51.81
Zm00001d018346_P001	Maize	mitochondrion	21.53	48.42
KRH05486	Soybean	cytosol	16.7	23.85
KRH26679	Soybean	cytosol	15.49	20.21
KRH56687	Soybean	nucleus	16.9	20.14
KRH59585	Soybean	plastid	15.69	18.57
KRH03799	Soybean	nucleus	17.71	16.21
KRH56821	Soybean	nucleus	20.32	15.4
KRH03123	Soybean	cytosol	20.12	15.24

Protein Annotations

EntrezGene:100786705	MapMan:12.3.2.1.1	MapMan:12.3.2.4.1	Gene3D:3.40.800.20	EMBL:ACUP02003369	EnsemblPlantsGene:GLYMA_06G000100
GO:GO:0003674	GO:GO:0003824	GO:GO:0004407	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006325	GO:GO:0006351	GO:GO:0006355
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043
GO:GO:0016569	GO:GO:0016575	GO:GO:0016787	GO:GO:0019538	GO:GO:0032041	GO:GO:0046872
GO:GO:0070932	InterPro:His_deacetylse	InterPro:His_deacetylse_1	InterPro:His_deacetylse_dom	InterPro:His_deacetylse_dom_sf	InterPro:IPR037138
UniProt:K7K0Q1	EnsemblPlants:KRH51318	ProteinID:KRH51318	ProteinID:KRH51318.1	PFAM:PF00850	PIRSF:PIRSF037913
PRINTS:PR01270	PRINTS:PR01271	PANTHER:PTHR10625	PANTHER:PTHR10625:SF178	SUPFAM:SSF52768	UniParc:UPI0002339D08
InterPro:Ureohydrolase_dom_sf	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr6:+:1764..15071

Molecular Weight (calculated)

55961.6 Da

IEP (calculated)

4.915

GRAVY (calculated)

-0.507

Length

497 amino acids

Sequence
(BLAST)

001: MDTGGNSLPS APDGVKRKVC YFYDPEVGNY YYGQGHPMKP HRIRMTHALL AHYGLLQHMQ VHKPFPARDR DLCRFHADDY VAFLRSITPE TQQDHLRQLK
101: RFNVGEDCPV FDGLYSFCQT YAGGSVGGAV KLNHDQCDIA VNWAGGLHHA KKCEASGFCY VNDIVLAILE LLKQHERVLY VDIDIHHGDG VEEAFYTTDR
201: VMTVSFHKFG DYFPGTGDVR DIGYGKGKYY SLNVPLDDGI DDESYHFLFK PIIGKIMEVF RPGAVVLQCG ADSLSGDRLG CFNLSIRGHA ECVKYMRSFN
301: VPLLLLGGGG YTIRNVARCW CYETGVALGI EVDDKMPQHE YYEYFGPDYT LHVAPSNMEN KNSWHLLEEI RSKLLENLSK LQHAPSVQFQ ERPPDSDLGE
401: ADEDHDDGDG PWDPDSDMDI DVERELVSSK VKKEISEHQP NDLEDQTSGE HLRGSDTAVA ETCMKALDIS CQKADEDNVK VEQNTVNDLA KETDLKC

Best Arabidopsis Sequence Match ( AT4G38130.1 )
(BLAST)

001: MDTGGNSLAS GPDGVKRKVC YFYDPEVGNY YYGQGHPMKP HRIRMTHALL AHYGLLQHMQ VLKPFPARDR DLCRFHADDY VSFLRSITPE TQQDQIRQLK
101: RFNVGEDCPV FDGLYSFCQT YAGGSVGGSV KLNHGLCDIA INWAGGLHHA KKCEASGFCY VNDIVLAILE LLKQHERVLY VDIDIHHGDG VEEAFYATDR
201: VMTVSFHKFG DYFPGTGHIQ DIGYGSGKYY SLNVPLDDGI DDESYHLLFK PIMGKVMEIF RPGAVVLQCG ADSLSGDRLG CFNLSIKGHA ECVKFMRSFN
301: VPLLLLGGGG YTIRNVARCW CYETGVALGV EVEDKMPEHE YYEYFGPDYT LHVAPSNMEN KNSRQMLEEI RNDLLHNLSK LQHAPSVPFQ ERPPDTETPE
401: VDEDQEDGDK RWDPDSDMDV DDDRKPIPSR VKREAVEPDT KDKDGLKGIM ERGKGCEVEV DESGSTKVTG VNPVGVEEAS VKMEEEGTNK GGAEQAFPPK
501: T

Arabidopsis Description

HDA19Histone deacetylase 19 [Source:UniProtKB/Swiss-Prot;Acc:O22446]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.