Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G184100.2 | Wheat | nucleus | 98.46 | 98.65 |
| HORVU6Hr1G038710.1 | Barley | cytosol | 96.35 | 96.72 |
| TraesCS6D01G171000.1 | Wheat | golgi | 98.27 | 89.02 |
| Zm00001d016381_P001 | Maize | nucleus | 69.62 | 88.73 |
| EES04741 | Sorghum | nucleus | 88.08 | 88.59 |
| Zm00001d053595_P004 | Maize | nucleus | 86.54 | 87.04 |
| TraesCS7B01G261800.1 | Wheat | nucleus | 81.54 | 81.7 |
| VIT_03s0038g04240.t01 | Wine grape | nucleus | 76.73 | 79.48 |
| VIT_14s0006g01820.t01 | Wine grape | nucleus | 76.35 | 79.08 |
| Os02t0215200-02 | Rice | cytoskeleton, cytosol, nucleus | 76.15 | 77.8 |
| GSMUA_Achr2P19590_001 | Banana | nucleus | 67.88 | 77.58 |
| KRH60609 | Soybean | nucleus | 73.85 | 77.26 |
| AT4G38130.1 | Thale cress | nucleus | 74.42 | 77.25 |
| Bra040131.1-P | Field mustard | nucleus | 74.42 | 77.09 |
| CDY30008 | Canola | nucleus | 74.42 | 77.09 |
| Os02t0214900-01 | Rice | cytoskeleton, cytosol, nucleus | 75.58 | 77.06 |
| CDY21119 | Canola | nucleus | 74.23 | 76.89 |
| KRH27562 | Soybean | nucleus | 73.46 | 76.86 |
| KRH77972 | Soybean | nucleus | 73.46 | 76.86 |
| GSMUA_Achr5P06320_001 | Banana | nucleus | 68.46 | 76.72 |
| KRH51318 | Soybean | nucleus | 73.27 | 76.66 |
| GSMUA_AchrUn_... | Banana | cytosol | 56.15 | 74.11 |
| GSMUA_Achr8P04190_001 | Banana | cytosol, nucleus, plasma membrane | 54.42 | 65.66 |
| GSMUA_Achr1P14440_001 | Banana | cytosol | 51.35 | 64.18 |
| TraesCS6B01G210200.1 | Wheat | cytosol | 52.88 | 60.04 |
| TraesCS2B01G309700.1 | Wheat | cytosol | 49.04 | 59.3 |
| TraesCS4B01G102600.1 | Wheat | cytosol, mitochondrion, nucleus | 42.12 | 46.5 |
| TraesCS7B01G266000.1 | Wheat | plastid | 17.31 | 25.5 |
| TraesCS1B01G329500.1 | Wheat | cytosol | 16.73 | 22.31 |
| TraesCS1B01G284500.1 | Wheat | cytosol, nucleus, plastid | 16.73 | 22.14 |
| TraesCS3B01G318000.1 | Wheat | cytoskeleton, cytosol, nucleus | 15.38 | 21.05 |
| TraesCS5B01G121300.1 | Wheat | vacuole | 15.38 | 17.66 |
| TraesCS2B01G204100.1 | Wheat | cytosol | 20.77 | 15.58 |
| TraesCS5B01G072100.1 | Wheat | nucleus | 17.69 | 14.98 |
Protein Annotations
| MapMan:12.3.2.1.1 | MapMan:12.3.2.4.1 | Gene3D:3.40.800.20 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004407 |
| GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016575 |
| GO:GO:0016787 | GO:GO:0019538 | InterPro:His_deacetylse | InterPro:His_deacetylse_1 | InterPro:His_deacetylse_dom | InterPro:His_deacetylse_dom_sf |
| InterPro:IPR037138 | PFAM:PF00850 | PIRSF:PIRSF037913 | PRINTS:PR01270 | PRINTS:PR01271 | PANTHER:PTHR10625 |
| PANTHER:PTHR10625:SF127 | SUPFAM:SSF52768 | EnsemblPlantsGene:TraesCS6B01G212600 | EnsemblPlants:TraesCS6B01G212600.3 | InterPro:Ureohydrolase_dom_sf | SEG:seg |
Description
No Description!
Coordinates
chr6B:+:281226567..281231814
Molecular Weight (calculated)
58230.1 Da
IEP (calculated)
4.972
GRAVY (calculated)
-0.618
Length
520 amino acids
Sequence
(BLAST)
(BLAST)
001: MDPSSAGAGG NSLPSVGPDG QKRRVCYFYD SEVGNYYYGQ GHPMKPHRIR MTHSLLAQYG LLDQMQVLRP NPARDRDLCR FHADDYISFL RSVTPETQQD
101: QIRALKRFNV GEDCPVFDGL YSFCQTYAGA SVGGAVKLNH GLDIAINWSG GLHHAKKCEA SGFCYVNDIV LAILELLKHH QRVLYVDIDI HHGDGVEEAF
201: YTTDRVMTVS FHKFGDYFPG TGDVRDIGHS KGKYYSLNVP LDDGIDDESY QSLFKPIMAK VMEVFQPGAV VLQCGADSLS GDRLGCFNLS IRGHAECVKY
301: MRSFNVPLLL LGGGGYTIRN VARCWCYETG VALGQELEDK MPVNEYYEYF GPDYTLHVAP SNMENKNTRY ELDNIRTKLL DNLSKLRHAP SVQFQERPPD
401: TEFPEPDEDE DDQDERHDDP DSDMEMDYHT PLEDSARRIT IQGTRVKRES AGAETKDQQD GSRVTGEHRG PEPMAEDMGP SKQAHQVDAN AMTVDEPGIV
501: KTESGSSTKL PDPPAIYQKP
101: QIRALKRFNV GEDCPVFDGL YSFCQTYAGA SVGGAVKLNH GLDIAINWSG GLHHAKKCEA SGFCYVNDIV LAILELLKHH QRVLYVDIDI HHGDGVEEAF
201: YTTDRVMTVS FHKFGDYFPG TGDVRDIGHS KGKYYSLNVP LDDGIDDESY QSLFKPIMAK VMEVFQPGAV VLQCGADSLS GDRLGCFNLS IRGHAECVKY
301: MRSFNVPLLL LGGGGYTIRN VARCWCYETG VALGQELEDK MPVNEYYEYF GPDYTLHVAP SNMENKNTRY ELDNIRTKLL DNLSKLRHAP SVQFQERPPD
401: TEFPEPDEDE DDQDERHDDP DSDMEMDYHT PLEDSARRIT IQGTRVKRES AGAETKDQQD GSRVTGEHRG PEPMAEDMGP SKQAHQVDAN AMTVDEPGIV
501: KTESGSSTKL PDPPAIYQKP
001: MRSKDKISYF YDGDVGSVYF GPNHPMKPHR LCMTHHLILA YGLHSKMEVY RPHKAYPIEM AQFHSPDYVE FLQRINPENQ NLFPNEMARY NLGEDCPVFE
101: DLFEFCQLYA GGTIDAARRL NNKLCDIAIN WAGGLHHAKK CDASGFCYIN DLVLGILELL KHHPRVLYID IDVHHGDGVE EAFYFTDRVM TVSFHKFGDK
201: FFPGTGDVKE IGEREGKFYA INVPLKDGID DSSFNRLFRT IISKVVEIYQ PGAIVLQCGA DSLARDRLGC FNLSIDGHAE CVKFVKKFNL PLLVTGGGGY
301: TKENVARCWT VETGILLDTE LPNEIPENDY IKYFAPDFSL KIPGGHIENL NTKSYISSIK VQILENLRYI QHAPSVQMQE VPPDFYIPDF DEDEQNPDVR
401: ADQRSRDKQI QRDDEYFDGD NDNDAS
101: DLFEFCQLYA GGTIDAARRL NNKLCDIAIN WAGGLHHAKK CDASGFCYIN DLVLGILELL KHHPRVLYID IDVHHGDGVE EAFYFTDRVM TVSFHKFGDK
201: FFPGTGDVKE IGEREGKFYA INVPLKDGID DSSFNRLFRT IISKVVEIYQ PGAIVLQCGA DSLARDRLGC FNLSIDGHAE CVKFVKKFNL PLLVTGGGGY
301: TKENVARCWT VETGILLDTE LPNEIPENDY IKYFAPDFSL KIPGGHIENL NTKSYISSIK VQILENLRYI QHAPSVQMQE VPPDFYIPDF DEDEQNPDVR
401: ADQRSRDKQI QRDDEYFDGD NDNDAS
Arabidopsis Description
HDA9Histone deacetylase 9 [Source:UniProtKB/Swiss-Prot;Acc:Q8H0W2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.